Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045525 Camellia sinensis var. sinensis HOM05D001780 ORTHO05D022113 1.0e-78 296.6 142 100.0
vmacro08154 Vaccinium macrocarpon HOM05D001780 ORTHO05D005322 3.4e-21 105.5 60 80.0
HanXRQChr13g0411251 Helianthus annuus HOM05D001780 ORTHO05D005322 1.7e-20 103.2 65 73.8
CSS0010227 Camellia sinensis var. sinensis HOM05D001780 ORTHO05D022113 2.2e-20 102.8 77 66.2
Dinv29743 Davidia involucrata HOM05D001780 ORTHO05D005322 2.2e-20 102.8 65 73.8
Lsat_1_v5_gn_3_30900 Lactuca sativa HOM05D001780 ORTHO05D005322 1.1e-19 100.5 65 72.3
ECA240G0962 Erigeron canadensis HOM05D001780 ORTHO05D005322 1.4e-19 100.1 65 72.3
CSS0032424 Camellia sinensis var. sinensis HOM05D001780 ORTHO05D005322 1.8e-19 99.8 66 71.2
SGA_v2.0_scaffold67G22635 Striga asiatica HOM05D001780 ORTHO05D005322 1.8e-19 99.8 89 57.3
Migut.G00161 Erythranthe guttata HOM05D001780 ORTHO05D005322 4.1e-19 98.6 65 69.2
Lj6A676G61 Lonicera japonica HOM05D001780 ORTHO05D005322 5.4e-19 98.2 60 76.7
HanXRQChr03g0080971 Helianthus annuus HOM05D001780 ORTHO05D005322 7.0e-19 97.8 65 72.3
Manes.03G195400 Manihot esculenta HOM05D001780 ORTHO05D005322 1.2e-18 97.1 65 70.8
Lsat_1_v5_gn_9_91680 Lactuca sativa HOM05D001780 ORTHO05D005322 3.5e-18 95.5 60 75.0
TAR362G0169 Trochodendron aralioides HOM05D001780 ORTHO05D005322 4.5e-18 95.1 65 67.7
SalBow2G1454 Salvia bowleyana HOM05D001780 ORTHO05D005322 7.7e-18 94.4 71 63.4
AL8G22410 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 1.0e-17 94.0 65 67.7
AT5G49030 Arabidopsis thaliana HOM05D001780 ORTHO05D005322 1.0e-17 94.0 65 67.7
A06p38600 Brassica napus HOM05D001780 ORTHO05D005322 1.0e-17 94.0 65 67.7
Carub.0008s0885 Capsella rubella HOM05D001780 ORTHO05D005322 1.0e-17 94.0 65 67.7
DCAR_002465 Daucus carota HOM05D001780 ORTHO05D005322 1.0e-17 94.0 60 71.7
Thhalv10003524m.g Eutrema salsugineum HOM05D001780 ORTHO05D005322 1.0e-17 94.0 65 67.7
Potri.010G014500 Populus trichocarpa HOM05D001780 ORTHO05D005322 1.0e-17 94.0 65 69.2
Sp2g19410 Schrenkiella parvula HOM05D001780 ORTHO05D005322 1.0e-17 94.0 65 67.7
CANSAT78G1960 Cannabis sativa HOM05D001780 ORTHO05D005322 1.3e-17 93.6 65 67.7
Thecc.02G218100 Theobroma cacao HOM05D001780 ORTHO05D005322 1.3e-17 93.6 65 67.7
Aqoxy2G02980_Aqoxy2G02981 Aquilegia oxysepala HOM05D001780 ORTHO05D005322 1.7e-17 93.2 65 66.2
CARHR182680 Cardamine hirsuta HOM05D001780 ORTHO05D005322 1.7e-17 93.2 65 66.2
Duzib160G0626 Durio zibethinus HOM05D001780 ORTHO05D005322 1.7e-17 93.2 65 67.7
PSO170G3623 Papaver somniferum HOM05D001780 ORTHO05D005322 1.7e-17 93.2 65 66.2
PSO210G4510 Papaver somniferum HOM05D001780 ORTHO05D005322 1.7e-17 93.2 65 66.2
Sabra10G0009300 Salix brachista HOM05D001780 ORTHO05D005322 1.7e-17 93.2 89 57.3
C02p57010 Brassica napus HOM05D001780 ORTHO05D005322 2.3e-17 92.8 60 71.7
BolC2t11771H Brassica oleracea HOM05D001780 ORTHO05D005322 2.3e-17 92.8 60 71.7
THA.LOC104818925 Tarenaya hassleriana HOM05D001780 ORTHO05D005322 2.3e-17 92.8 65 64.6
AL8G22430 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 2.9e-17 92.4 60 71.7
C07p39660 Brassica napus HOM05D001780 ORTHO05D005322 2.9e-17 92.4 60 71.7
BolC7t44489H Brassica oleracea HOM05D001780 ORTHO05D005322 2.9e-17 92.4 60 71.7
Ciclev10004211m.g Citrus clementina HOM05D001780 ORTHO05D005322 2.9e-17 92.4 107 50.5
Gohir.A09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 2.9e-17 92.4 65 67.7
Gohir.D09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 2.9e-17 92.4 65 67.7
Gorai.006G096300 Gossypium raimondii HOM05D001780 ORTHO05D005322 2.9e-17 92.4 65 67.7
Ca_01936_v3 Cicer arietinum L. HOM05D001780 ORTHO05D005322 3.8e-17 92.0 65 66.2
GSVIVG01017762001 Vitis vinifera HOM05D001780 ORTHO05D005322 3.8e-17 92.0 60 68.3
Lsat_1_v5_gn_7_51800 Lactuca sativa HOM05D001780 ORTHO05D022113 5.0e-17 91.7 54 77.8
Medtr2g436760 Medicago truncatula HOM05D001780 ORTHO05D005322 6.5e-17 91.3 65 66.2
Psat1g153920 Pisum sativum HOM05D001780 ORTHO05D005322 6.5e-17 91.3 65 66.2
Hund03251 Selenicereus undatus HOM05D001780 ORTHO05D005322 6.5e-17 91.3 65 66.2
EL10Ac9g22594 Beta vulgaris HOM05D001780 ORTHO05D005322 8.6e-17 90.9 65 64.6
CiPaw.01G148500 Carya illinoinensis HOM05D001780 ORTHO05D005322 8.6e-17 90.9 65 66.2
PGR004G0386 Punica granatum HOM05D001780 ORTHO05D005322 8.6e-17 90.9 65 63.1
QL06p008943 Quercus lobata HOM05D001780 ORTHO05D005322 8.6e-17 90.9 72 62.5
BcaC03g17692 Brassica carinata HOM05D001780 ORTHO05D005322 1.1e-16 90.5 65 64.6
Cc03_g01900 Coffea canephora HOM05D001780 ORTHO05D005322 1.1e-16 90.5 60 70.0
COL.COLO4_04960 Corchorus olitorius HOM05D001780 ORTHO05D005322 1.5e-16 90.1 74 58.1
Lalb_Chr15g0083491 Lupinus albus HOM05D001780 ORTHO05D005322 1.5e-16 90.1 65 64.6
Ah.01g003180 Amaranthus hybridus HOM05D001780 ORTHO05D005322 1.9e-16 89.7 65 66.2
Cfa015386 Carpinus fangiana HOM05D001780 ORTHO05D005322 1.9e-16 89.7 65 64.6
Haze_01199 Corylus avellana HOM05D001780 ORTHO05D005322 1.9e-16 89.7 65 64.6
MD13G1168400 Malus domestica HOM05D001780 ORTHO05D005322 2.5e-16 89.4 65 64.6
MD16G1168800 Malus domestica HOM05D001780 ORTHO05D005322 2.5e-16 89.4 65 64.6
TWI09G1280 Tripterygium wilfordii HOM05D001780 ORTHO05D005322 2.5e-16 89.4 65 63.1
Eucgr.H03916 Eucalyptus grandis HOM05D001780 ORTHO05D005322 4.2e-16 88.6 65 63.1
FAN07G2352 Fragaria x ananassa HOM05D000639 ORTHO05D005322 5.5e-16 88.2 97 49.5
Nn3g18527 Nelumbo nucifera HOM05D001780 ORTHO05D005322 5.5e-16 88.2 65 61.5
CsaV3_3G014640 Cucumis sativus L. HOM05D001780 ORTHO05D005322 7.2e-16 87.8 65 63.1
Atru.chr4.2840 Acer truncatum HOM05D001780 ORTHO05D005322 9.5e-16 87.4 105 47.6
RcHm_v2.0_Chr4g0422271 Rosa chinensis HOM05D001780 ORTHO05D005322 1.2e-15 87.0 65 61.5
AUR62029200 Chenopodium quinoa HOM05D001780 ORTHO05D005322 1.6e-15 86.7 65 61.5
FvH4_4g18060 Fragaria vesca HOM05D001780 ORTHO05D005322 1.6e-15 86.7 65 61.5
FAN12G1911 Fragaria x ananassa HOM05D001780 ORTHO05D005322 1.6e-15 86.7 65 61.5
FAN12G3693 Fragaria x ananassa HOM05D001780 ORTHO05D005322 1.6e-15 86.7 65 61.5
FAN17G0722 Fragaria x ananassa HOM05D001780 ORTHO05D005322 1.6e-15 86.7 95 52.6
Lj6g0027734 Lotus japonicus HOM05D001780 ORTHO05D005322 1.6e-15 86.7 65 63.1
Sc13g0003450 Simmondsia chinensis HOM05D001780 ORTHO05D005322 1.6e-15 86.7 65 61.5
Nitab4.5_0000059g0580 Nicotiana tabacum HOM05D001780 ORTHO05D005322 2.1e-15 86.3 65 63.1
Phvul.003G105600 Phaseolus vulgaris HOM05D001780 ORTHO05D005322 2.1e-15 86.3 65 63.1
Prupe.1G136500 Prunus persica HOM05D001780 ORTHO05D005322 2.1e-15 86.3 65 61.5
VMungo1215G2474 Vigna mungo HOM05D001780 ORTHO05D005322 2.1e-15 86.3 65 63.1
CAN.G185.34 Capsicum annuum HOM05D001780 ORTHO05D005322 2.8e-15 85.9 65 63.1
AUR62014941 Chenopodium quinoa HOM05D001780 ORTHO05D005322 2.8e-15 85.9 65 61.5
Glyma.17G026600 Glycine max HOM05D001780 ORTHO05D005322 2.8e-15 85.9 65 61.5
Sed0021413 Sechium edule HOM05D001780 ORTHO05D005322 2.8e-15 85.9 65 61.5
Solyc01g080810.3 Solanum lycopersicum HOM05D001780 ORTHO05D005322 2.8e-15 85.9 65 63.1
Sopen01g030670 Solanum pennellii HOM05D001780 ORTHO05D005322 2.8e-15 85.9 65 63.1
PGSC0003DMG400006289 Solanum tuberosum HOM05D001780 ORTHO05D005322 2.8e-15 85.9 65 63.1
arahy.Tifrunner.gnm1.ann1.A68CME Arachis hypogaea HOM05D001780 ORTHO05D005322 3.6e-15 85.5 60 65.0
arahy.Tifrunner.gnm1.ann1.I7AL06 Arachis hypogaea HOM05D001780 ORTHO05D005322 3.6e-15 85.5 89 51.7
Peaxi162Scf00048g01820 Petunia axillaris HOM05D001780 ORTHO05D005322 3.6e-15 85.5 65 61.5
CDE01G0296 Ceratophyllum demersum HOM05D001780 ORTHO05D005322 4.7e-15 85.1 65 60.0
COL.COLO4_34741 Corchorus olitorius HOM05D001780 ORTHO05D005322 4.7e-15 85.1 71 57.7
Nitab4.5_0000700g0090 Nicotiana tabacum HOM05D001780 ORTHO05D005322 4.7e-15 85.1 65 61.5
Rhsim04G0222400 Rhododendron simsii HOM05D001780 ORTHO05D005322 6.1e-15 84.7 87 51.7
CDE12G0042 Ceratophyllum demersum HOM05D001780 ORTHO05D005322 1.8e-14 83.2 65 58.5
Pp3c17_5990 Physcomitrium patens HOM05D001780 ORTHO05D005322 1.8e-14 83.2 65 58.5
SEGI_15432 Sequoiadendron giganteum HOM05D001780 ORTHO05D005322 2.3e-14 82.8 65 56.9
Os02g0778200 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D005322 3.0e-14 82.4 65 60.0
ATR0796G005 Amborella trichopoda HOM05D001780 ORTHO05D005322 4.0e-14 82.0 65 58.5
AagrBONN_evm.TU.Sc2ySwM_340.179 Anthoceros agrestis HOM05D001780 ORTHO05D005322 6.8e-14 81.3 65 56.9
Zm00001eb256880 Zea mays HOM05D001780 ORTHO05D005322 1.5e-13 80.1 65 56.9
Mapoly0002s0241 Marchantia polymorpha HOM05D001780 ORTHO05D005322 5.7e-13 78.2 65 53.8
A02p37850 Brassica napus HOM05D001780 ORTHO05D005322 4.9e-12 75.1 44 75.0
BraA02t08767Z Brassica rapa HOM05D001780 ORTHO05D005322 4.9e-12 75.1 44 75.0
MCO13G360 Micromonas commoda HOM05D001780 ORTHO05D005322 5.4e-11 71.6 65 52.3
SMO230G0004 Selaginella moellendorffii HOM05D001780 ORTHO05D005322 1.2e-10 70.5 65 50.8
SMO367G0518 Selaginella moellendorffii HOM05D001780 ORTHO05D005322 1.2e-10 70.5 65 50.8
RcHm_v2.0_Chr2g0162141 Rosa chinensis HOM05D001780 ORTHO05D022113 1.6e-10 70.1 58 56.9
ClCG05G006110 Citrullus lanatus HOM05D001780 ORTHO05D005322 3.8e-09 65.5 95 42.1
Cre16.g689871 Chlamydomonas reinhardtii HOM05D001780 ORTHO05D005322 6.1e-07 58.2 65 44.6
PRCOL_00005558 Prasinoderma coloniale HOM05D001780 ORTHO05D005322 1.4e-06 57.0 65 44.6


User provided reference genes

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