Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.0e-251 872.8 422 100.0
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.9e-250 868.6 422 99.3
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 1.7e-222 775.8 423 87.2
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 6.5e-206 720.7 489 75.1
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 3.0e-203 711.8 481 74.2
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 3.1e-200 701.8 421 78.6
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 1.2e-199 699.9 422 78.4
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 5.9e-199 697.6 422 78.2
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 2.3e-198 695.7 412 79.6
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 8.6e-198 693.7 423 78.0
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 6.1e-196 687.6 421 77.7
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 3.4e-194 681.8 422 76.5
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 8.6e-190 667.2 423 74.5
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 3.3e-189 665.2 420 74.8
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 9.5e-189 663.7 425 72.7
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 8.0e-188 660.6 424 73.1
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 4.0e-187 658.3 435 71.3
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 1.1e-184 650.2 425 72.9
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 2.7e-183 645.6 423 72.1
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 2.3e-182 642.5 426 71.4
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 4.3e-181 638.3 426 71.8
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 7.3e-181 637.5 431 69.6
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 3.1e-179 632.1 430 71.2
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 1.5e-178 629.8 441 68.9
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 3.4e-178 628.6 424 70.8
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 4.4e-178 628.2 452 67.5
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 5.8e-178 627.9 441 68.7
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 5.8e-178 627.9 425 70.6
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 1.3e-174 616.7 432 69.7
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 1.7e-174 616.3 426 68.5
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 3.3e-173 612.1 410 70.2
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 4.3e-173 611.7 423 69.0
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 9.5e-173 610.5 435 67.4
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 1.6e-172 609.8 424 68.2
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 6.2e-172 607.8 434 66.6
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 8.9e-171 604.0 441 64.4
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.2e-170 603.6 424 67.2
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 3.4e-170 602.1 427 67.0
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 8.4e-169 597.4 413 68.0
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 8.4e-169 597.4 431 66.6
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 2.4e-168 595.9 427 66.3
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 9.2e-168 594.0 453 63.4
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 1.2e-167 593.6 431 66.1
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 4.6e-167 591.7 372 75.0
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 1.3e-166 590.1 429 65.7
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 1.5e-165 586.6 465 61.1
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 2.5e-165 585.9 431 64.0
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 4.7e-164 581.6 435 64.4
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 1.8e-163 579.7 426 63.6
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 1.8e-163 579.7 426 63.6
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 2.4e-163 579.3 426 63.6
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 3.1e-163 578.9 430 64.2
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 4.0e-163 578.6 426 63.6
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 7.6e-162 574.3 426 63.1
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 7.6e-162 574.3 426 63.1
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 9.9e-162 573.9 424 63.9
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 8.4e-161 570.9 424 63.7
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 1.1e-160 570.5 423 62.6
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 1.9e-160 569.7 432 61.8
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 2.4e-160 569.3 457 60.0
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 6.0e-159 564.7 423 62.6
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 1.3e-158 563.5 351 76.9
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 3.0e-158 562.4 418 62.2
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 8.7e-158 560.8 422 61.4
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.9e-157 559.7 428 63.8
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 9.6e-157 557.4 424 62.7
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 2.1e-156 556.2 423 62.2
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 1.4e-155 553.5 423 61.2
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 2.9e-153 545.8 435 60.2
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 1.1e-149 533.9 424 59.0
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 1.8e-147 526.6 442 57.0
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 5.3e-147 525.0 428 58.6
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 4.2e-144 515.4 426 58.7
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 5.5e-144 515.0 421 57.5
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.0e-142 510.8 421 57.0
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 2.5e-141 506.1 421 56.5
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 2.6e-138 496.1 428 56.5
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 4.5e-138 495.4 426 58.2
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 1.7e-137 493.4 465 57.0
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 1.0e-134 484.2 344 66.3
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 1.3e-132 477.2 385 58.4
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 1.7e-129 466.8 424 55.7
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 1.7e-129 466.8 424 55.7
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 4.8e-124 448.7 408 52.2
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 2.2e-121 439.9 346 61.3
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 2.9e-121 439.5 431 48.0
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 4.4e-117 425.6 334 61.1
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 5.3e-107 392.1 448 44.6
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 9.1e-107 391.3 427 44.5
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 9.4e-104 381.3 496 40.7
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 8.8e-102 374.8 415 44.1
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 9.4e-96 354.8 249 66.7
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 1.2e-95 354.4 205 82.4
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 2.0e-90 337.0 213 74.2
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 9.8e-85 318.2 186 80.6
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.1e-83 314.7 385 41.8
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 7.8e-82 308.5 180 77.2
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 3.4e-77 293.1 185 75.7
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 3.5e-66 256.5 186 61.3
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 2.0e-53 214.2 106 93.4
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 8.4e-52 208.8 147 61.2
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.1e-51 208.4 156 59.6
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 2.5e-48 197.2 147 67.3
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 9.6e-48 195.3 147 66.7
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 2.8e-47 193.7 147 66.0
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 2.8e-47 193.7 147 66.7
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 6.4e-44 182.6 125 70.4
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 8.4e-44 182.2 119 72.3
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 1.9e-43 181.0 128 64.1
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 5.4e-43 179.5 152 54.6
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 4.6e-42 176.4 127 70.9
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 8.7e-41 172.2 101 77.2
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 9.0e-38 162.2 124 59.7
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 1.5e-32 144.8 88 77.3
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 1.4e-30 138.3 83 75.9
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 4.0e-30 136.7 86 73.3
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 6.4e-28 129.4 135 47.4
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 1.6e-26 124.8 70 78.6
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 1.6e-26 124.8 83 65.1
SEGI_03880 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 8.7e-25 119.0 80 60.0
Zm00001eb338130 Zea mays HOM05D005601 ORTHO05D007265 2.8e-23 114.0 118 52.5
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.4e-22 111.7 88 58.0
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 1.5e-21 108.2 61 72.1
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 4.2e-19 100.1 59 69.5
SHI32867 Sapria himalayana HOM05D005601 ORTHO05D007265 3.3e-16 90.5 119 42.0
SHI32866 Sapria himalayana HOM05D005601 ORTHO05D007265 5.3e-14 83.2 55 67.3
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 5.9e-13 79.7 59 61.0
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 1.0e-12 79.0 51 66.7
PRCOL_00003152 Prasinoderma coloniale HOM05D005601 ORTHO05D007265 7.2e-11 72.8 150 32.0
Zm00001eb234590 Zea mays HOM05D000076 ORTHO05D007265 4.6e-10 70.1 42 71.4
Zm00001eb316750 Zea mays HOM05D000076 ORTHO05D001279 2.3e-09 67.8 42 69.0
BraA06t24405Z Brassica rapa HOM05D005601 ORTHO05D007265 8.8e-09 65.9 103 36.9
Cpa.g.sc32.60 Carica papaya HOM05D005601 ORTHO05D000047 2.0e-08 64.7 44 63.6
A06p12420 Brassica napus HOM05D005601 ORTHO05D007265 3.3e-08 63.9 103 35.9
HPP92_016689 Vanilla planifolia HOM05D005601 ORTHO05D007265 5.7e-08 63.2 37 64.9
BcaC05g25566 Brassica carinata HOM05D005601 ORTHO05D007265 2.8e-07 60.8 103 35.0


User provided reference genes

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