Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 5.1e-145 517.7 257 100.0
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 1.1e-142 510.0 257 98.8
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 2.9e-108 395.6 261 77.4
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 2.1e-106 389.4 261 77.0
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 3.3e-91 339.0 265 66.4
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 4.3e-91 338.6 260 65.8
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 9.5e-91 337.4 265 66.0
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 3.7e-87 325.5 260 64.6
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 6.4e-87 324.7 263 65.0
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 6.4e-87 324.7 225 76.0
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 8.3e-87 324.3 256 63.3
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 1.1e-86 323.9 256 62.9
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 1.4e-86 323.6 256 64.1
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 1.4e-86 323.6 254 64.6
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 2.4e-86 322.8 263 63.9
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 7.0e-86 321.2 263 60.8
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 9.2e-86 320.9 263 64.6
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 2.0e-85 319.7 258 63.6
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.0e-85 319.7 258 65.9
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 2.0e-85 319.7 263 63.9
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 2.0e-85 319.7 260 63.1
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 3.5e-85 318.9 258 65.5
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 3.5e-85 318.9 258 65.5
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 4.6e-85 318.5 263 63.1
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 6.0e-85 318.2 258 65.5
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.3e-84 317.0 258 65.1
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 1.7e-84 316.6 263 63.1
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 3.9e-84 315.5 257 62.6
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 3.9e-84 315.5 258 64.7
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 5.0e-84 315.1 262 63.0
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 6.6e-84 314.7 256 62.5
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 1.5e-83 313.5 263 62.4
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 2.5e-83 312.8 257 61.5
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 3.3e-83 312.4 258 65.1
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 3.3e-83 312.4 258 65.1
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 3.3e-83 312.4 261 65.1
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 4.3e-83 312.0 258 62.4
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 4.3e-83 312.0 266 61.3
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 5.6e-83 311.6 262 60.3
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 1.6e-82 310.1 261 63.6
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 2.8e-82 309.3 256 60.9
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 6.2e-82 308.1 256 61.7
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 1.8e-81 306.6 262 61.5
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 6.8e-81 304.7 260 59.2
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 8.9e-81 304.3 255 62.0
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 8.9e-81 304.3 255 62.0
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 8.9e-81 304.3 262 60.7
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 3.4e-80 302.4 255 62.0
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 4.4e-80 302.0 273 60.4
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 7.5e-80 301.2 256 59.0
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 9.8e-80 300.8 260 61.5
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 1.7e-79 300.1 264 58.7
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 1.7e-79 300.1 266 60.9
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 8.3e-79 297.7 255 60.8
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 7.1e-78 294.7 257 59.5
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 7.1e-78 294.7 221 70.6
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 1.2e-77 293.9 227 69.2
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 2.1e-77 293.1 266 57.9
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 3.5e-77 292.4 259 59.1
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 4.6e-77 292.0 264 59.1
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 7.8e-77 291.2 263 58.6
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 1.0e-76 290.8 262 57.6
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 6.6e-76 288.1 263 59.3
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 6.6e-76 288.1 317 50.5
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 1.5e-75 287.0 265 57.4
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 3.3e-75 285.8 254 57.1
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 1.2e-74 283.9 259 57.9
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 1.2e-74 283.9 265 58.5
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 2.1e-74 283.1 255 57.6
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 2.8e-74 282.7 259 58.7
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 1.4e-73 280.4 259 57.5
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 1.4e-73 280.4 259 57.5
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 1.4e-73 280.4 259 57.5
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 2.3e-73 279.6 264 58.0
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 3.1e-73 279.3 263 56.7
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 4.0e-73 278.9 265 56.2
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 6.8e-73 278.1 267 55.1
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 2.6e-72 276.2 267 55.8
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 4.4e-72 275.4 264 55.3
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 1.1e-70 270.8 255 53.7
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 5.4e-70 268.5 261 54.0
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 1.2e-69 267.3 259 53.3
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 6.0e-69 265.0 258 52.3
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 1.3e-68 263.8 263 55.5
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 1.3e-68 263.8 260 53.8
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 2.3e-68 263.1 259 52.9
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 3.0e-68 262.7 223 62.8
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 1.5e-67 260.4 255 52.2
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 3.3e-67 259.2 214 65.9
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 5.6e-67 258.5 220 62.3
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 4.7e-66 255.4 230 59.6
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 8.1e-66 254.6 265 50.6
Nn2g10602 Nelumbo nucifera HOM05D005673 ORTHO05D007081 2.2e-63 246.5 190 65.8
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 3.8e-63 245.7 258 48.4
Dinv25934 Davidia involucrata HOM05D005673 ORTHO05D007081 1.6e-61 240.4 156 80.1
AUR62041616 Chenopodium quinoa HOM05D005673 ORTHO05D007081 3.9e-60 235.7 264 48.9
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 2.5e-59 233.0 252 50.0
Peaxi162Scf00170g00413 Petunia axillaris HOM05D005673 ORTHO05D007081 9.6e-59 231.1 253 53.4
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 1.3e-58 230.7 231 51.5
Hma1.2p1_0348F.1_g131860 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 1.8e-52 210.3 151 70.9
Atru.chr12.608 Acer truncatum HOM05D005673 ORTHO05D007081 4.8e-50 202.2 149 67.1
MD00G1166800 Malus domestica HOM05D005673 ORTHO05D007081 9.3e-46 188.0 173 56.6
SGA_v2.0_scaffold17G08196 Striga asiatica HOM05D005673 ORTHO05D007081 2.1e-45 186.8 146 59.6
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 4.5e-40 169.1 248 41.1
Medtr7g047440 Medicago truncatula HOM05D005673 ORTHO05D007081 7.6e-40 168.3 158 52.5
Medtr7g451610 Medicago truncatula HOM05D005673 ORTHO05D007081 7.6e-40 168.3 158 52.5
Medtr7g451710 Medicago truncatula HOM05D005673 ORTHO05D007081 7.6e-40 168.3 158 52.5
HPP92_012075 Vanilla planifolia HOM05D005673 ORTHO05D007081 1.4e-38 164.1 160 52.5
VMungo1383G1385 Vigna mungo HOM05D005673 ORTHO05D007081 2.5e-38 163.3 148 53.4
unitig_37.g12298 Utricularia gibba HOM05D005673 ORTHO05D007081 5.1e-36 155.6 124 58.1
AagrBONN_evm.TU.Sc2ySwM_362.1467 Anthoceros agrestis HOM05D005673 ORTHO05D007081 1.1e-33 147.9 226 38.9
Psat0s9937g0040 Pisum sativum HOM05D005673 ORTHO05D007081 2.0e-32 143.7 110 62.7
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 5.0e-31 139.0 166 50.0
Pp3c2_31740 Physcomitrium patens HOM05D005673 ORTHO05D007081 6.5e-31 138.7 279 34.1
SMO347G0616 Selaginella moellendorffii HOM05D005673 ORTHO05D007081 6.5e-31 138.7 199 41.2
Psat3g152960 Pisum sativum HOM05D005673 ORTHO05D007081 3.2e-30 136.3 115 55.7
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 2.6e-24 116.7 162 50.0
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 2.9e-23 113.2 102 55.9
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 3.8e-23 112.8 81 74.1
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 2.7e-21 106.7 102 53.9
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 7.9e-21 105.1 100 52.0
HanXRQChr02g0043631 Helianthus annuus HOM05D005673 ORTHO05D007081 1.8e-20 104.0 95 53.7
CBR_g23354 Chara braunii HOM05D005673 ORTHO05D007081 6.9e-17 92.0 192 35.4
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 4.5e-16 89.4 171 33.9
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 5.9e-16 89.0 77 59.7
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 1.3e-15 87.8 77 57.1
Cpa.g.sc5360.1 Carica papaya HOM05D005673 ORTHO05D007081 4.2e-14 82.8 48 79.2
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 1.0e-12 78.2 67 55.2
BcaB04g18418 Brassica carinata HOM05D005673 ORTHO05D007081 1.1e-11 74.7 104 43.3
MD01G1114600 Malus domestica HOM05D005673 ORTHO05D007081 1.5e-06 57.8 67 55.2
Oeu008279.1 Olea europaea HOM05D005673 ORTHO05D007081 7.2e-06 55.5 42 61.9


User provided reference genes

Program Settings