Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045397 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 1.7e-54 215.7 107 100.0
Rhsim09G0129900 Rhododendron simsii HOM05D004859 ORTHO05D005807 1.9e-48 195.7 106 90.6
Solyc04g056350.1 Solanum lycopersicum HOM05D004859 ORTHO05D005807 2.7e-47 191.8 107 86.9
Sopen04g025250 Solanum pennellii HOM05D004859 ORTHO05D005807 3.5e-47 191.4 107 86.0
CAN.G217.12 Capsicum annuum HOM05D004859 ORTHO05D005807 7.8e-47 190.3 107 86.0
Lalb_Chr01g0020391 Lupinus albus HOM05D004859 ORTHO05D005807 1.7e-46 189.1 107 86.9
Sc16g0010390 Simmondsia chinensis HOM05D004859 ORTHO05D005807 1.7e-46 189.1 107 86.0
PGSC0003DMG400007259 Solanum tuberosum HOM05D004859 ORTHO05D005807 3.0e-46 188.3 107 86.0
PGR031G2676 Punica granatum HOM05D004859 ORTHO05D005807 5.1e-46 187.6 107 86.9
Oeu020252.1 Olea europaea HOM05D004859 ORTHO05D005807 1.5e-45 186.0 107 86.0
CSS0011817 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 1.9e-45 185.7 106 86.8
Oeu062049.1 Olea europaea HOM05D004859 ORTHO05D005807 2.5e-45 185.3 107 86.0
unitig_26.g9580 Utricularia gibba HOM05D000798 ORTHO05D000659 5.6e-45 184.1 107 83.2
Nitab4.5_0000083g0160 Nicotiana tabacum HOM05D004859 ORTHO05D005807 7.3e-45 183.7 107 81.3
Nitab4.5_0001435g0020 Nicotiana tabacum HOM05D004859 ORTHO05D005807 7.3e-45 183.7 107 81.3
unitig_749.g13492 Utricularia gibba HOM05D004859 ORTHO05D005807 7.3e-45 183.7 107 84.1
Cpa.g.sc39.7 Carica papaya HOM05D004859 ORTHO05D005807 9.5e-45 183.3 107 85.0
COL.COLO4_19821 Corchorus olitorius HOM05D004859 ORTHO05D005807 9.5e-45 183.3 107 83.2
Gohir.A05G391600 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.6e-44 182.6 107 84.1
TWI36G0708 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 2.1e-44 182.2 107 84.1
GSVIVG01019111001 Vitis vinifera HOM05D004859 ORTHO05D005807 2.1e-44 182.2 106 82.1
Gohir.D04G025700 Gossypium hirsutum HOM05D004859 ORTHO05D005807 2.8e-44 181.8 107 83.2
Gorai.012G028300 Gossypium raimondii HOM05D004859 ORTHO05D005807 2.8e-44 181.8 107 83.2
Ah.06g195490 Amaranthus hybridus HOM05D004859 ORTHO05D005807 4.7e-44 181.0 107 81.3
TAR629G2726 Trochodendron aralioides HOM05D004859 ORTHO05D005807 4.7e-44 181.0 107 82.2
Glyma.18G241900 Glycine max HOM05D004859 ORTHO05D005807 6.2e-44 180.6 107 85.0
Migut.F02136 Erythranthe guttata HOM05D004859 ORTHO05D005807 8.1e-44 180.3 107 81.3
Glyma.09G250600 Glycine max HOM05D004859 ORTHO05D005807 1.1e-43 179.9 107 82.2
Gorai.004G261900 Gossypium raimondii HOM05D004859 ORTHO05D005807 1.1e-43 179.9 107 84.1
Lj1g0018632 Lotus japonicus HOM05D004859 ORTHO05D005807 1.1e-43 179.9 106 81.1
Sc06g0005050 Simmondsia chinensis HOM05D004859 ORTHO05D005807 1.1e-43 179.9 107 81.3
HPP92_025926 Vanilla planifolia HOM05D004859 ORTHO05D005807 1.1e-43 179.9 105 83.8
Gohir.D08G245400 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.4e-43 179.5 107 84.1
Duzib177G0866 Durio zibethinus HOM05D004859 ORTHO05D005807 1.8e-43 179.1 107 82.2
Lalb_Chr03g0038491 Lupinus albus HOM05D004859 ORTHO05D005807 1.8e-43 179.1 107 81.3
Aqoxy7G00303 Aquilegia oxysepala HOM05D004859 ORTHO05D005807 2.4e-43 178.7 107 78.5
Cc09_g03620 Coffea canephora HOM05D004859 ORTHO05D005807 2.4e-43 178.7 111 78.4
Peaxi162Scf00344g00092 Petunia axillaris HOM05D004859 ORTHO05D005807 2.4e-43 178.7 107 79.4
QL01p048380 Quercus lobata HOM05D004859 ORTHO05D005807 2.4e-43 178.7 106 84.0
ATR0568G125 Amborella trichopoda HOM05D004859 ORTHO05D005807 4.0e-43 177.9 107 82.2
Cfa006265 Carpinus fangiana HOM05D004859 ORTHO05D005807 4.0e-43 177.9 107 81.3
Ciclev10013411m.g Citrus clementina HOM05D004859 ORTHO05D005807 4.0e-43 177.9 107 82.2
SalBow6G1022 Salvia bowleyana HOM05D004859 ORTHO05D005807 4.0e-43 177.9 107 81.3
DCAR_029983 Daucus carota HOM05D004859 ORTHO05D005807 6.8e-43 177.2 107 81.3
Gohir.A13G154200 Gossypium hirsutum HOM05D004859 ORTHO05D005807 6.8e-43 177.2 107 81.3
Gohir.D13G158900 Gossypium hirsutum HOM05D004859 ORTHO05D005807 6.8e-43 177.2 107 81.3
Gorai.013G179600 Gossypium raimondii HOM05D004859 ORTHO05D005807 6.8e-43 177.2 107 81.3
Actinidia38902 Actinidia chinensis HOM05D004859 ORTHO05D005807 1.2e-42 176.4 99 85.9
AUR62000312 Chenopodium quinoa HOM05D004859 ORTHO05D005807 1.2e-42 176.4 107 79.4
DCAR_024584 Daucus carota HOM05D004859 ORTHO05D005807 1.2e-42 176.4 107 75.7
CANSAT35G0417 Cannabis sativa HOM05D004859 ORTHO05D005807 1.5e-42 176.0 107 79.4
Nn7g37400 Nelumbo nucifera HOM05D004859 ORTHO05D005807 1.5e-42 176.0 107 82.2
VMungo1383G1359 Vigna mungo HOM05D004859 ORTHO05D005807 1.5e-42 176.0 107 80.4
Atru.chr12.1788 Acer truncatum HOM05D004859 ORTHO05D005807 2.0e-42 175.6 107 77.6
CDE12G0839 Ceratophyllum demersum HOM05D004859 ORTHO05D005807 2.0e-42 175.6 107 80.4
AUR62006657 Chenopodium quinoa HOM05D004859 ORTHO05D005807 2.0e-42 175.6 107 79.4
Pp3c26_1250 Physcomitrium patens HOM05D004859 ORTHO05D005807 2.0e-42 175.6 107 78.5
CiPaw.07G080000 Carya illinoinensis HOM05D004859 ORTHO05D005807 2.6e-42 175.3 107 82.2
Medtr7g079990 Medicago truncatula HOM05D004859 ORTHO05D005807 2.6e-42 175.3 107 78.5
Sed0011478 Sechium edule HOM05D004859 ORTHO05D005807 2.6e-42 175.3 107 75.7
MELO3C010059.2 Cucumis melo HOM05D004859 ORTHO05D005807 3.4e-42 174.9 107 77.6
ClCG03G010710 Citrullus lanatus HOM05D004859 ORTHO05D005807 4.4e-42 174.5 107 77.6
Eucgr.H01388 Eucalyptus grandis HOM05D004859 ORTHO05D005807 4.4e-42 174.5 108 80.6
MBI18_g38869_MAGBIO Magnolia biondii HOM05D004859 ORTHO05D005807 4.4e-42 174.5 107 79.4
Gohir.A08G225000 Gossypium hirsutum HOM05D004859 ORTHO05D005807 5.8e-42 174.1 104 82.7
Hma1.2p1_0171F.1_g075510 Hydrangea macrophylla HOM05D004859 ORTHO05D005807 5.8e-42 174.1 107 78.5
Ca_07986_v3 Cicer arietinum L. HOM05D004859 ORTHO05D005807 7.6e-42 173.7 107 79.4
ECA233G5366 Erigeron canadensis HOM05D004859 ORTHO05D005807 7.6e-42 173.7 107 79.4
TWI18G1000 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 7.6e-42 173.7 107 78.5
Haze_04552 Corylus avellana HOM05D004859 ORTHO05D005807 9.9e-42 173.3 107 80.4
Lsat_1_v5_gn_2_18260 Lactuca sativa HOM05D004859 ORTHO05D005807 1.3e-41 172.9 107 73.8
CsaV3_1G044540 Cucumis sativus L. HOM05D004859 ORTHO05D005807 1.7e-41 172.6 107 76.6
Aa31LG5G13260 Aethionema arabicum HOM05D004859 ORTHO05D005807 2.2e-41 172.2 107 73.8
Duzib128G0817 Durio zibethinus HOM05D004859 ORTHO05D005807 2.2e-41 172.2 107 81.3
Pp3c9_1130 Physcomitrium patens HOM05D004859 ORTHO05D005807 2.2e-41 172.2 107 76.6
Thecc.05G199300 Theobroma cacao HOM05D004859 ORTHO05D005807 2.2e-41 172.2 107 81.3
ECA238G2179 Erigeron canadensis HOM05D004859 ORTHO05D005807 2.9e-41 171.8 107 76.6
Manes.12G005900 Manihot esculenta HOM05D004859 ORTHO05D005807 2.9e-41 171.8 107 81.3
Psat3g138280 Pisum sativum HOM05D004859 ORTHO05D005807 2.9e-41 171.8 107 76.6
Potri.019G053500 Populus trichocarpa HOM05D004859 ORTHO05D005807 2.9e-41 171.8 105 79.0
RcHm_v2.0_Chr3g0447891 Rosa chinensis HOM05D004859 ORTHO05D005807 6.4e-41 170.6 107 75.7
Mapoly0153s0037 Marchantia polymorpha HOM05D004859 ORTHO05D005807 8.4e-41 170.2 107 74.8
Manes.13G005600 Manihot esculenta HOM05D004859 ORTHO05D005807 1.1e-40 169.9 107 79.4
TPR.G30708 Trifolium pratense HOM05D004859 ORTHO05D005807 1.1e-40 169.9 107 77.6
EL10Ac4g09966 Beta vulgaris HOM05D004859 ORTHO05D005807 1.4e-40 169.5 102 78.4
Phvul.008G054200 Phaseolus vulgaris HOM05D004859 ORTHO05D005807 1.4e-40 169.5 109 77.1
THA.LOC104802953 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 1.4e-40 169.5 107 76.6
PSO675G0300 Papaver somniferum HOM05D004859 ORTHO05D005807 1.9e-40 169.1 107 72.9
PSO675G8596 Papaver somniferum HOM05D004859 ORTHO05D005807 1.9e-40 169.1 107 72.9
Prupe.6G361200 Prunus persica HOM05D004859 ORTHO05D005807 1.9e-40 169.1 116 71.6
Lsat_1_v5_gn_8_2360 Lactuca sativa HOM05D004859 ORTHO05D005807 2.4e-40 168.7 105 74.3
HanXRQChr11g0333601 Helianthus annuus HOM05D004859 ORTHO05D005807 3.2e-40 168.3 107 76.6
MD04G1244600 Malus domestica HOM05D004859 ORTHO05D005807 3.2e-40 168.3 112 72.3
CANSAT54G1839 Cannabis sativa HOM05D004859 ORTHO05D005807 4.1e-40 167.9 107 75.7
Pp3c15_1090 Physcomitrium patens HOM05D004859 ORTHO05D005807 4.1e-40 167.9 107 73.8
Potri.013G086400 Populus trichocarpa HOM05D004859 ORTHO05D005807 7.1e-40 167.2 107 76.6
SEGI_19955 Sequoiadendron giganteum HOM05D004859 ORTHO05D005807 7.1e-40 167.2 107 77.6
THA.LOC104827174 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 7.1e-40 167.2 107 74.8
FvH4_6g00510 Fragaria vesca HOM05D004859 ORTHO05D005807 9.2e-40 166.8 108 72.2
FAN09G3430 Fragaria x ananassa HOM05D004859 ORTHO05D005807 1.2e-39 166.4 107 72.0
FAN14G1059 Fragaria x ananassa HOM05D004859 ORTHO05D005807 1.2e-39 166.4 107 72.0
BcaC05g30510 Brassica carinata HOM05D004859 ORTHO05D005807 1.6e-39 166.0 107 74.8
C09p75910 Brassica napus HOM05D004859 ORTHO05D005807 1.6e-39 166.0 107 74.8
MD12G1260500 Malus domestica HOM05D004859 ORTHO05D005807 1.6e-39 166.0 111 69.4
FAN05G4796 Fragaria x ananassa HOM05D004859 ORTHO05D005807 2.1e-39 165.6 107 73.8
Os06g0708600 Oryza sativa ssp. japonica HOM05D004859 ORTHO05D005807 2.7e-39 165.2 115 71.3
Carub.0003s0189 Capsella rubella HOM05D004859 ORTHO05D005807 6.0e-39 164.1 107 73.8
Zm00001eb272650 Zea mays HOM05D004859 ORTHO05D005807 6.0e-39 164.1 109 72.5
Sp3g01820 Schrenkiella parvula HOM05D004859 ORTHO05D005807 1.0e-38 163.3 107 73.8
BcaB01g04980 Brassica carinata HOM05D004859 ORTHO05D005807 1.3e-38 162.9 108 74.1
BolC3t13398H Brassica oleracea HOM05D004859 ORTHO05D005807 1.3e-38 162.9 108 74.1
A03p07800 Brassica napus HOM05D004859 ORTHO05D005807 1.7e-38 162.5 109 73.4
BraA03t10107Z Brassica rapa HOM05D004859 ORTHO05D005807 1.7e-38 162.5 109 73.4
BcaC05g30507 Brassica carinata HOM05D004859 ORTHO05D005807 2.3e-38 162.2 107 72.9
BolC5t35066H Brassica oleracea HOM05D004859 ORTHO05D005807 2.3e-38 162.2 107 73.8
BcaC03g18492 Brassica carinata HOM05D004859 ORTHO05D005807 6.6e-38 160.6 107 71.0
A02p03550 Brassica napus HOM05D004859 ORTHO05D005807 6.6e-38 160.6 107 72.9
CARHR076800 Cardamine hirsuta HOM05D004859 ORTHO05D005807 6.6e-38 160.6 107 72.9
AL3G12200 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 8.6e-38 160.2 107 72.9
BraA02t05326Z Brassica rapa HOM05D004859 ORTHO05D005807 8.6e-38 160.2 107 72.9
CARHR196760 Cardamine hirsuta HOM05D004859 ORTHO05D005807 8.6e-38 160.2 107 71.0
HanXRQChr09g0244001 Helianthus annuus HOM05D004859 ORTHO05D005807 1.5e-37 159.5 107 73.8
SHI13720 Sapria himalayana HOM05D004859 ORTHO05D005807 1.5e-37 159.5 106 73.6
SMO361G0285 Selaginella moellendorffii HOM05D004859 ORTHO05D005807 1.5e-37 159.5 107 72.0
BcaB08g36850 Brassica carinata HOM05D004859 ORTHO05D005807 1.9e-37 159.1 107 72.0
BcaC04g18876 Brassica carinata HOM05D004859 ORTHO05D005807 1.9e-37 159.1 107 72.0
C09p60710 Brassica napus HOM05D004859 ORTHO05D005807 1.9e-37 159.1 107 72.0
BolC9t58902H Brassica oleracea HOM05D004859 ORTHO05D005807 1.9e-37 159.1 107 72.0
Sp6g27710 Schrenkiella parvula HOM05D004859 ORTHO05D005807 1.9e-37 159.1 107 72.0
Zm00001eb227470 Zea mays HOM05D004859 ORTHO05D005807 1.9e-37 159.1 119 66.4
Thhalv10015095m.g Eutrema salsugineum HOM05D004859 ORTHO05D005807 2.5e-37 158.7 107 72.0
A10p22730 Brassica napus HOM05D004859 ORTHO05D005807 3.3e-37 158.3 107 72.9
BraA10t44336Z Brassica rapa HOM05D004859 ORTHO05D005807 3.3e-37 158.3 107 72.9
AT3G02790 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 4.3e-37 157.9 107 72.0
AL6G27410 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 1.6e-36 156.0 107 69.2
AT5G16470 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 1.6e-36 156.0 107 69.2
BolC2t06754H Brassica oleracea HOM05D004859 ORTHO05D005807 1.6e-36 156.0 107 71.0
Carub.0006s1467 Capsella rubella HOM05D004859 ORTHO05D005807 1.6e-36 156.0 107 69.2
Sabra13G0077700 Salix brachista HOM05D004859 ORTHO05D005807 3.6e-36 154.8 99 74.7
Aa31LG11G13190 Aethionema arabicum HOM05D004859 ORTHO05D005807 1.4e-35 152.9 107 71.0
VMungo0464G0653 Vigna mungo HOM05D004859 ORTHO05D005807 3.6e-28 128.3 80 73.8
A05p44330 Brassica napus HOM05D004859 ORTHO05D005807 9.3e-24 113.6 69 73.9
BraA06t23289Z Brassica rapa HOM05D004859 ORTHO05D005807 9.3e-24 113.6 69 73.9
Cre09.g416500 Chlamydomonas reinhardtii HOM05D004859 ORTHO05D005807 1.0e-22 110.2 105 58.1
RcHm_v2.0_Chr1g0316641 Rosa chinensis HOM05D004859 ORTHO05D005807 2.1e-20 102.4 72 63.9
Nn1g09361 Nelumbo nucifera HOM05D004859 ORTHO05D005807 1.8e-19 99.4 52 92.3
PRCOL_00002520 Prasinoderma coloniale HOM05D004859 ORTHO05D005807 9.0e-19 97.1 86 58.1
Nn1g01054 Nelumbo nucifera HOM05D004859 ORTHO05D005807 2.9e-17 92.0 56 76.8
AUR62006656 Chenopodium quinoa HOM05D004859 ORTHO05D005807 4.9e-17 91.3 86 52.3
BcaB08g36851 Brassica carinata HOM05D004859 ORTHO05D005807 1.3e-14 83.2 107 49.5
SHI22764 Sapria himalayana HOM05D004859 ORTHO05D005807 1.2e-10 70.1 81 50.6
SHI07073 Sapria himalayana HOM05D004859 ORTHO05D005807 3.0e-06 55.5 78 43.6
Dinv29105 Davidia involucrata HOM05D004859 ORTHO05D005807 6.7e-06 54.3 28 92.9


User provided reference genes

Program Settings