Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 3.0e-246 854.7 432 100.0
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 4.4e-189 664.8 411 82.2
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 4.8e-188 661.4 417 79.6
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 2.6e-186 655.6 414 78.0
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 7.7e-186 654.1 414 79.2
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 2.1e-183 646.0 413 76.3
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 2.3e-182 642.5 413 76.5
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 2.3e-182 642.5 413 76.8
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 2.3e-182 642.5 415 78.3
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.6e-181 639.0 350 93.4
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 1.7e-180 636.3 411 76.6
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 4.1e-179 631.7 413 75.1
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 7.0e-179 630.9 413 75.3
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.6e-178 629.8 413 75.3
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 2.0e-178 629.4 413 76.3
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 2.7e-178 629.0 411 76.4
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.7e-178 629.0 481 68.6
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 3.5e-178 628.6 411 75.9
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 5.9e-178 627.9 411 74.9
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 1.3e-177 626.7 411 75.2
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.7e-177 626.3 415 75.2
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 2.2e-177 625.9 411 76.4
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 3.8e-177 625.2 411 76.4
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 5.0e-177 624.8 413 75.8
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 5.0e-177 624.8 412 73.8
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 6.5e-177 624.4 409 75.3
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 6.5e-177 624.4 414 76.1
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 1.1e-176 623.6 411 75.2
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 3.2e-176 622.1 411 74.9
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 5.5e-176 621.3 414 72.9
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 1.6e-175 619.8 412 74.8
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 2.1e-175 619.4 411 74.5
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 6.1e-175 617.8 409 75.6
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 8.0e-175 617.5 411 72.0
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 1.0e-174 617.1 412 73.8
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 1.8e-174 616.3 411 72.7
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 1.8e-174 616.3 414 72.9
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 4.0e-174 615.1 412 75.2
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.2e-173 613.6 411 71.5
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 1.2e-173 613.6 411 71.5
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 2.0e-173 612.8 411 71.5
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 5.7e-173 611.3 411 71.5
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 9.8e-173 610.5 410 73.7
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 1.3e-172 610.1 410 74.4
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.8e-172 609.0 411 70.8
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 2.8e-172 609.0 416 72.4
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 3.7e-172 608.6 417 72.7
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 3.7e-172 608.6 413 73.6
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 4.8e-172 608.2 413 73.6
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 6.3e-172 607.8 411 73.0
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 1.4e-171 606.7 444 70.0
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 2.4e-171 605.9 410 73.9
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 2.4e-171 605.9 410 74.1
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 3.1e-171 605.5 376 80.9
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 1.6e-170 603.2 412 72.6
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 2.0e-170 602.8 411 72.0
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 2.0e-170 602.8 415 72.5
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 2.7e-170 602.4 416 72.4
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.7e-170 602.4 411 70.8
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 3.5e-170 602.1 416 72.4
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 3.5e-170 602.1 414 72.9
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 4.5e-170 601.7 415 72.5
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 4.5e-170 601.7 414 72.0
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 5.9e-170 601.3 414 72.5
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 7.7e-170 600.9 410 73.2
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 2.3e-169 599.4 415 72.5
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 2.3e-169 599.4 410 72.7
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 3.8e-169 598.6 456 68.4
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 1.5e-168 596.7 411 70.3
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 5.5e-168 594.7 415 71.3
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 1.2e-167 593.6 507 63.5
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 3.6e-167 592.0 417 71.7
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 1.0e-166 590.5 415 70.1
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 1.8e-166 589.7 415 71.3
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 2.3e-166 589.3 417 71.0
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 1.2e-165 587.0 413 70.7
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 1.2e-165 587.0 412 71.1
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 2.0e-165 586.3 409 69.9
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 7.5e-165 584.3 412 71.1
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 7.5e-165 584.3 410 69.5
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.6e-162 576.6 410 69.8
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 5.9e-162 574.7 413 68.3
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 5.9e-162 574.7 412 70.4
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 7.8e-162 574.3 413 68.3
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 7.8e-162 574.3 413 67.8
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.0e-161 573.9 412 68.0
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 2.3e-161 572.8 413 67.8
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 2.3e-161 572.8 410 68.5
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 2.3e-161 572.8 410 68.8
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 2.9e-161 572.4 413 68.3
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 2.9e-161 572.4 413 67.8
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 2.9e-161 572.4 413 67.8
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 5.0e-161 571.6 409 68.2
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 8.6e-161 570.9 409 68.5
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 8.6e-161 570.9 410 68.3
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 1.1e-160 570.5 413 67.6
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.9e-160 569.7 413 69.5
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 2.5e-160 569.3 412 67.7
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 3.3e-160 568.9 413 67.3
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 3.3e-160 568.9 418 69.6
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 4.3e-160 568.5 413 68.3
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 5.6e-160 568.2 410 68.3
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.6e-159 566.6 413 68.8
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 2.1e-159 566.2 413 67.3
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.1e-159 566.2 417 69.1
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 2.1e-159 566.2 411 67.4
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 3.6e-159 565.5 410 68.0
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 3.6e-159 565.5 410 67.3
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 8.0e-159 564.3 413 67.3
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 8.0e-159 564.3 413 67.6
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 2.3e-158 562.8 409 68.0
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.2e-157 560.5 412 66.7
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 1.7e-156 556.6 466 62.0
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 3.5e-154 548.9 403 68.5
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 3.9e-145 518.8 416 63.2
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 2.5e-144 516.2 434 60.6
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 3.6e-143 512.3 411 61.3
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 3.0e-137 492.7 347 70.3
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 4.3e-136 488.8 304 77.6
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 2.2e-132 476.5 411 57.9
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 2.4e-131 473.0 336 70.2
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 1.9e-128 463.4 410 55.4
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 5.8e-125 451.8 329 67.5
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 2.4e-123 446.4 420 56.0
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 4.2e-123 445.7 421 56.1
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.2e-122 444.1 414 53.6
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 1.1e-120 437.6 420 55.0
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 6.2e-119 431.8 334 66.5
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 1.4e-99 367.5 241 72.6
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 4.1e-94 349.4 229 74.2
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 1.1e-80 304.7 432 41.4
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 1.4e-73 281.2 390 44.9
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.3e-72 276.6 181 74.0
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 3.7e-63 246.5 322 43.8
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 8.0e-58 228.8 233 52.4
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 6.1e-50 202.6 188 57.4
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 2.9e-47 193.7 254 48.4
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 2.9e-47 193.7 115 82.6
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 4.7e-34 149.8 152 50.7
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 1.2e-32 145.2 220 40.0
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 1.2e-29 135.2 104 65.4
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 4.3e-27 126.7 84 67.9
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 2.0e-24 117.9 80 67.5
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 2.4e-22 110.9 87 62.1
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 1.2e-21 108.6 184 41.3
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 1.6e-21 108.2 89 62.9
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 1.6e-21 108.2 89 62.9
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 2.1e-21 107.8 83 63.9
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 2.5e-19 100.9 89 60.7
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 8.1e-18 95.9 73 63.0
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 4.9e-15 86.7 59 71.2
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 6.4e-15 86.3 74 55.4
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 6.4e-15 86.3 74 55.4
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.4e-14 85.1 81 50.6
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 4.2e-14 83.6 74 54.1
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 4.3e-11 73.6 115 40.9
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 5.6e-11 73.2 115 40.0
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 9.6e-11 72.4 88 46.6
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 6.9e-09 66.2 66 47.0
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 2.2e-07 61.2 67 46.3


User provided reference genes

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