Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.1e-308 1061.6 573 100.0
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 7.6e-306 1053.1 573 99.5
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 2.4e-190 669.5 571 65.7
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.8e-182 643.3 571 62.5
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.2e-181 640.6 571 62.3
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 1.7e-180 636.7 555 64.0
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.6e-167 593.6 565 59.3
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 3.1e-166 589.3 567 58.7
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 9.9e-165 584.3 566 60.2
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 1.5e-157 560.5 568 58.8
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 8.4e-156 554.7 567 54.5
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.1e-155 554.3 566 56.7
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 7.1e-155 551.6 550 57.6
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.2e-154 550.8 570 56.3
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.1e-154 550.1 566 55.8
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 7.9e-154 548.1 573 55.8
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 3.0e-153 546.2 565 57.2
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 5.1e-153 545.4 579 56.0
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 3.3e-152 542.7 567 54.5
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 6.9e-150 535.0 550 57.3
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 9.0e-150 534.6 566 55.8
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 7.6e-149 531.6 567 54.3
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.3e-148 530.8 571 56.9
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 3.8e-148 529.3 577 53.2
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 5.0e-148 528.9 549 55.7
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 1.1e-147 527.7 578 53.1
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.5e-147 525.4 565 53.6
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 1.2e-146 524.2 568 54.2
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.2e-146 524.2 575 52.7
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 3.6e-146 522.7 575 52.2
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 7.9e-146 521.5 565 53.1
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 1.4e-145 520.8 570 56.8
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.8e-145 520.4 568 54.0
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 1.5e-144 517.3 573 53.6
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 2.5e-144 516.5 566 53.0
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 1.8e-142 510.4 565 53.6
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.1e-142 509.6 566 53.5
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.5e-141 507.3 565 52.6
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 5.9e-141 505.4 578 50.5
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 5.9e-141 505.4 610 48.9
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 1.0e-140 504.6 536 52.2
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 1.0e-140 504.6 564 52.5
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 3.8e-140 502.7 592 50.2
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.6e-138 497.3 548 54.4
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 2.7e-138 496.5 564 52.1
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 3.6e-138 496.1 566 50.7
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 2.0e-136 490.3 564 52.1
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 2.0e-136 490.3 568 51.8
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.4e-136 488.4 557 52.6
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 9.7e-136 488.0 565 52.0
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 2.8e-135 486.5 571 51.8
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 3.7e-135 486.1 610 46.6
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.4e-134 483.4 545 52.5
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 3.4e-133 479.6 544 52.9
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.7e-133 478.4 544 52.8
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 1.0e-132 478.0 564 51.1
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 2.2e-132 476.9 571 52.2
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 2.2e-132 476.9 593 49.9
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 2.9e-132 476.5 566 51.6
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 8.5e-132 474.9 486 55.8
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.9e-131 473.8 603 48.9
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 9.4e-131 471.5 532 49.1
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 2.1e-130 470.3 533 48.2
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 2.7e-130 469.9 591 48.7
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 3.6e-130 469.5 580 50.5
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 4.7e-130 469.2 539 49.4
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 6.7e-129 465.3 586 48.3
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.5e-128 464.2 600 48.7
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 1.5e-128 464.2 543 51.6
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.0e-128 463.8 486 54.7
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 2.6e-128 463.4 524 50.0
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 2.6e-128 463.4 536 49.6
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 3.3e-128 463.0 525 50.1
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 7.4e-128 461.8 594 49.3
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.7e-127 460.7 572 48.4
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 1.7e-127 460.7 595 48.7
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 2.2e-127 460.3 533 48.0
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 3.7e-127 459.5 530 49.6
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 1.8e-126 457.2 530 49.4
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 1.8e-126 457.2 596 49.5
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 4.1e-126 456.1 523 48.9
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 4.1e-126 456.1 523 48.9
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 9.1e-126 454.9 533 50.1
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 2.6e-125 453.4 573 49.2
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 3.8e-124 449.5 565 50.4
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 1.9e-123 447.2 571 49.9
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.5e-123 446.8 458 53.7
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 5.5e-123 445.7 524 48.3
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 8.8e-121 438.3 588 47.6
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 7.5e-120 435.3 566 47.2
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 1.8e-118 430.6 577 45.2
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 2.7e-117 426.8 536 46.8
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 2.7e-117 426.8 581 46.5
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 9.4e-115 418.3 599 44.9
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 9.4e-115 418.3 580 47.9
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 2.7e-114 416.8 575 46.3
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 4.4e-112 409.5 526 50.2
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 2.8e-111 406.8 542 44.6
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 4.5e-109 399.4 543 44.6
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 5.0e-108 396.0 569 43.1
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 5.0e-108 396.0 479 49.5
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 6.8e-105 385.6 337 60.2
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 7.0e-102 375.6 612 40.8
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 9.2e-102 375.2 310 61.9
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 5.0e-100 369.4 561 43.5
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 9.5e-99 365.2 554 42.4
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 8.9e-97 358.6 562 44.0
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.7e-95 354.4 536 42.9
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 5.4e-94 349.4 734 36.4
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 3.9e-92 343.2 493 41.6
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.9e-92 343.2 625 36.6
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 5.6e-91 339.3 571 39.1
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 8.0e-90 335.5 549 40.3
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 1.2e-88 331.6 575 38.8
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 2.5e-75 287.3 454 41.0
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.8e-74 283.9 527 36.1
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 6.4e-71 272.7 532 34.8
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 8.7e-68 262.3 608 32.9
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 1.4e-65 255.0 273 49.1
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 1.1e-62 245.4 210 58.6
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 3.5e-61 240.4 645 30.7
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 9.6e-59 232.3 501 34.1
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 1.6e-58 231.5 662 30.4
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 2.9e-55 220.7 417 39.1
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 9.3e-54 215.7 531 32.4
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 5.6e-51 206.5 290 39.0
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.4e-46 191.8 172 57.6
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 5.5e-38 163.3 185 53.0
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 6.0e-37 159.8 144 55.6
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.3e-36 157.9 571 28.0
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 9.0e-33 146.0 300 33.0
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.5e-32 145.2 489 26.0
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 2.9e-31 141.0 281 32.7
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 1.4e-30 138.7 160 52.5
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 6.7e-28 129.8 142 50.7
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 6.5e-23 113.2 88 62.5
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 6.5e-23 113.2 88 62.5
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 1.1e-22 112.5 293 29.4
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 1.3e-18 99.0 126 47.6
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 3.7e-18 97.4 177 35.0
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 7.0e-09 66.6 85 37.6


User provided reference genes

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