Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045011 Camellia sinensis var. sinensis HOM05D002499 ORTHO05D111361 2.0e-91 339.0 159 100.0
CSS0033326 Camellia sinensis var. sinensis HOM05D002499 ORTHO05D109341 1.0e-58 230.3 167 69.5
CSS0046167 Camellia sinensis var. sinensis HOM05D002499 ORTHO05D002812 3.6e-16 89.0 77 59.7
Actinidia08951 Actinidia chinensis HOM05D002499 ORTHO05D002812 2.6e-14 82.8 77 53.2
CSS0036691 Camellia sinensis var. sinensis HOM05D002499 ORTHO05D002812 5.8e-14 81.6 77 54.5
Dinv23317 Davidia involucrata HOM05D002499 ORTHO05D002812 7.6e-14 81.3 77 54.5
GSVIVG01013625001 Vitis vinifera HOM05D002499 ORTHO05D002812 2.2e-13 79.7 77 53.2
TAR625G0939 Trochodendron aralioides HOM05D002499 ORTHO05D002812 7.1e-12 74.7 77 51.9
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 1.6e-11 73.6 77 49.4
Rhsim12G0188800 Rhododendron simsii HOM05D001993 ORTHO05D009037 1.6e-11 73.6 53 67.9
vmacro16869 Vaccinium macrocarpon HOM05D002499 ORTHO05D002812 2.7e-11 72.8 45 77.8
vmacro17297 Vaccinium macrocarpon HOM05D002499 ORTHO05D002812 2.7e-11 72.8 45 77.8
Aqoxy3G01317 Aquilegia oxysepala HOM05D002499 ORTHO05D002812 4.6e-11 72.0 77 50.6
Lalb_Chr22g0350771 Lupinus albus HOM05D002499 ORTHO05D002812 6.0e-11 71.6 77 51.9
Nitab4.5_0004227g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 6.0e-11 71.6 77 48.1
CDE02G4653 Ceratophyllum demersum HOM05D002499 ORTHO05D002812 7.9e-11 71.2 77 48.1
AUR62016599 Chenopodium quinoa HOM05D002499 ORTHO05D002812 7.9e-11 71.2 77 48.1
Lalb_Chr14g0373931 Lupinus albus HOM05D002499 ORTHO05D002812 1.0e-10 70.9 77 51.9
HPP92_005343 Vanilla planifolia HOM05D002499 ORTHO05D002812 1.0e-10 70.9 77 48.1
EL10Ac2g03135 Beta vulgaris HOM05D002499 ORTHO05D002812 1.3e-10 70.5 77 48.1
QL05p033830 Quercus lobata HOM05D002499 ORTHO05D002812 1.7e-10 70.1 53 64.2
Peaxi162Scf00023g01330 Petunia axillaris HOM05D002499 ORTHO05D002812 2.3e-10 69.7 77 46.8
vmacro17298 Vaccinium macrocarpon HOM05D002499 ORTHO05D002812 2.3e-10 69.7 56 62.5
DCAR_021361 Daucus carota HOM05D002499 ORTHO05D002812 3.0e-10 69.3 76 47.4
Lj9C496G12 Lonicera japonica HOM05D002499 ORTHO05D002812 3.0e-10 69.3 77 50.6
Hund06540 Selenicereus undatus HOM05D002499 ORTHO05D002812 5.1e-10 68.6 53 62.3
Haze_16626 Corylus avellana HOM05D002499 ORTHO05D002812 6.6e-10 68.2 53 64.2
Haze_16629 Corylus avellana HOM05D002499 ORTHO05D002812 6.6e-10 68.2 53 64.2
arahy.Tifrunner.gnm1.ann1.K5UKEJ Arachis hypogaea HOM05D002499 ORTHO05D002812 8.7e-10 67.8 75 50.7
CAN.G438.90 Capsicum annuum HOM05D002499 ORTHO05D002812 8.7e-10 67.8 77 45.5
Cpa.g.sc10.127 Carica papaya HOM05D002499 ORTHO05D002812 8.7e-10 67.8 77 49.4
Atru.chr1.1502 Acer truncatum HOM05D002499 ORTHO05D002812 1.1e-09 67.4 53 62.3
Solyc03g120000.3 Solanum lycopersicum HOM05D002499 ORTHO05D002812 1.1e-09 67.4 77 46.8
Sopen03g038880 Solanum pennellii HOM05D002499 ORTHO05D002812 1.1e-09 67.4 77 46.8
PGSC0003DMG400005610 Solanum tuberosum HOM05D002499 ORTHO05D002812 1.1e-09 67.4 77 46.8
Thecc.06G035800 Theobroma cacao HOM05D002499 ORTHO05D002812 1.1e-09 67.4 53 62.3
Phvul.005G181500 Phaseolus vulgaris HOM05D002499 ORTHO05D002812 1.5e-09 67.0 53 66.0
Psat5g304000 Pisum sativum HOM05D002499 ORTHO05D002812 1.5e-09 67.0 44 70.5
Sc12g0008570 Simmondsia chinensis HOM05D002499 ORTHO05D002812 1.5e-09 67.0 77 46.8
Sc12g0009010 Simmondsia chinensis HOM05D002499 ORTHO05D002812 1.5e-09 67.0 77 46.8
Manes.04G106600 Manihot esculenta HOM05D002499 ORTHO05D002812 1.9e-09 66.6 53 60.4
TPR.G29606 Trifolium pratense HOM05D002499 ORTHO05D002812 1.9e-09 66.6 44 70.5
arahy.Tifrunner.gnm1.ann1.50IW82 Arachis hypogaea HOM05D002499 ORTHO05D002812 2.5e-09 66.2 53 64.2
arahy.Tifrunner.gnm1.ann1.PLPE7Z Arachis hypogaea HOM05D002499 ORTHO05D002812 2.5e-09 66.2 53 64.2
Cfa001916 Carpinus fangiana HOM05D002499 ORTHO05D002812 2.5e-09 66.2 53 62.3
Gohir.D05G122300 Gossypium hirsutum HOM05D002499 ORTHO05D002812 2.5e-09 66.2 45 68.9
Gorai.009G125800 Gossypium raimondii HOM05D002499 ORTHO05D002812 2.5e-09 66.2 45 68.9
Glyma.15G005300 Glycine max HOM05D002499 ORTHO05D002812 3.3e-09 65.9 53 62.3
Gohir.A05G121300 Gossypium hirsutum HOM05D002499 ORTHO05D002812 3.3e-09 65.9 45 66.7
Duzib235G1396 Durio zibethinus HOM05D002499 ORTHO05D002812 4.3e-09 65.5 51 62.7
Nn2g12223 Nelumbo nucifera HOM05D002499 ORTHO05D002812 4.3e-09 65.5 77 48.1
VMungo1080G0657 Vigna mungo HOM05D002499 ORTHO05D002812 4.3e-09 65.5 53 64.2
Ca_01032_v3 Cicer arietinum L. HOM05D002499 ORTHO05D002812 7.3e-09 64.7 42 71.4
Cc11_g03280 Coffea canephora HOM05D002499 ORTHO05D002812 7.3e-09 64.7 77 42.9
Lj3g0010501 Lotus japonicus HOM05D002499 ORTHO05D002812 7.3e-09 64.7 53 62.3
Potri.005G110500 Populus trichocarpa HOM05D002499 ORTHO05D002812 7.3e-09 64.7 53 62.3
arahy.Tifrunner.gnm1.ann1.K6DZ42 Arachis hypogaea HOM05D002499 ORTHO05D002812 9.6e-09 64.3 53 62.3
COL.COLO4_25125 Corchorus olitorius HOM05D002499 ORTHO05D002812 9.6e-09 64.3 47 61.7
MELO3C023451.2 Cucumis melo HOM05D002499 ORTHO05D002812 9.6e-09 64.3 77 48.1
CsaV3_7G032060 Cucumis sativus L. HOM05D002499 ORTHO05D002812 9.6e-09 64.3 77 48.1
ClCG09G003160 Citrullus lanatus HOM05D002499 ORTHO05D002812 1.3e-08 63.9 45 68.9
ATR0800G174 Amborella trichopoda HOM05D002499 ORTHO05D002812 2.1e-08 63.2 77 46.8
Eucgr.F02255 Eucalyptus grandis HOM05D002499 ORTHO05D002812 3.6e-08 62.4 45 64.4
SGA_v2.0_scaffold117G32333 Striga asiatica HOM05D002499 ORTHO05D002812 3.6e-08 62.4 79 41.8
arahy.Tifrunner.gnm1.ann1.PQEG92 Arachis hypogaea HOM05D002499 ORTHO05D002812 4.8e-08 62.0 55 60.0
Ciclev10025428m.g Citrus clementina HOM05D002499 ORTHO05D002812 4.8e-08 62.0 45 64.4
HanXRQChr05g0140801 Helianthus annuus HOM05D002499 ORTHO05D002812 4.8e-08 62.0 77 46.8
Lsat_1_v5_gn_5_7901 Lactuca sativa HOM05D002499 ORTHO05D002812 4.8e-08 62.0 77 46.8
Sed0027441 Sechium edule HOM05D002499 ORTHO05D002812 6.2e-08 61.6 45 66.7
SEGI_24500 Sequoiadendron giganteum HOM05D002499 ORTHO05D002812 6.2e-08 61.6 77 44.2
FAN09G4839 Fragaria x ananassa HOM05D002499 ORTHO05D002812 8.1e-08 61.2 77 45.5
RcHm_v2.0_Chr2g0133711 Rosa chinensis HOM05D002499 ORTHO05D002812 8.1e-08 61.2 77 45.5
ATR0767G236 Amborella trichopoda HOM05D002499 ORTHO05D002812 1.1e-07 60.8 77 46.8
CiPaw.01G251600 Carya illinoinensis HOM05D002499 ORTHO05D002812 1.4e-07 60.5 53 60.4
FvH4_6g29040 Fragaria vesca HOM05D002499 ORTHO05D002812 2.4e-07 59.7 77 45.5
FAN14G1678 Fragaria x ananassa HOM05D002499 ORTHO05D002812 2.4e-07 59.7 77 45.5
Sabra05G0090600 Salix brachista HOM05D002499 ORTHO05D002812 3.1e-07 59.3 53 58.5
Atru.chr7.1114 Acer truncatum HOM05D002499 ORTHO05D002812 5.3e-07 58.5 77 41.6
PSO017G4237 Papaver somniferum HOM05D002499 ORTHO05D002812 9.0e-07 57.8 81 44.4
PSO170G6815 Papaver somniferum HOM05D002499 ORTHO05D002812 9.0e-07 57.8 81 44.4
Ciclev10008137m.g Citrus clementina HOM05D002499 ORTHO05D002812 1.2e-06 57.4 77 41.6
ECA246G0812 Erigeron canadensis HOM05D002499 ORTHO05D002812 1.2e-06 57.4 77 44.2
Migut.D01091 Erythranthe guttata HOM05D002499 ORTHO05D002812 1.5e-06 57.0 45 60.0
Medtr2g104600 Medicago truncatula HOM05D002499 ORTHO05D002812 1.5e-06 57.0 40 72.5
Potri.007G063900 Populus trichocarpa HOM05D002499 ORTHO05D002812 2.0e-06 56.6 77 46.8
CANSAT11G0323 Cannabis sativa HOM05D002499 ORTHO05D002812 2.6e-06 56.2 77 41.6
Eucgr.C01353 Eucalyptus grandis HOM05D002499 ORTHO05D002812 2.6e-06 56.2 77 39.0
Eucgr.C01440 Eucalyptus grandis HOM05D002499 ORTHO05D002812 2.6e-06 56.2 77 39.0
AT2G26000 Arabidopsis thaliana HOM05D002499 ORTHO05D002812 3.4e-06 55.8 45 62.2
BcaB05g25257 Brassica carinata HOM05D002499 ORTHO05D002812 3.4e-06 55.8 45 62.2
BcaC03g15952 Brassica carinata HOM05D002499 ORTHO05D002812 3.4e-06 55.8 45 62.2
A02p23440 Brassica napus HOM05D002499 ORTHO05D009037 3.4e-06 55.8 45 62.2
C02p37140 Brassica napus HOM05D002499 ORTHO05D002812 3.4e-06 55.8 45 62.2
BolC2t09726H Brassica oleracea HOM05D001993 ORTHO05D009037 3.4e-06 55.8 45 62.2
BraA02t07336Z Brassica rapa HOM05D002499 ORTHO05D002812 3.4e-06 55.8 45 62.2
Carub.0002s2698 Capsella rubella HOM05D002499 ORTHO05D002812 3.4e-06 55.8 45 62.2
Eucgr.C01348 Eucalyptus grandis HOM05D002499 ORTHO05D002812 3.4e-06 55.8 77 39.0
Eucgr.C01400 Eucalyptus grandis HOM05D002499 ORTHO05D002812 3.4e-06 55.8 77 39.0
Eucgr.C01410 Eucalyptus grandis HOM05D002499 ORTHO05D002812 3.4e-06 55.8 77 39.0
Thhalv10018494m.g Eutrema salsugineum HOM05D002499 ORTHO05D002812 3.4e-06 55.8 45 62.2
Sp5g35210 Schrenkiella parvula HOM05D002499 ORTHO05D002812 3.4e-06 55.8 45 62.2
CiPaw.04G173800 Carya illinoinensis HOM05D002499 ORTHO05D002812 4.5e-06 55.5 77 39.0
Eucgr.C01428 Eucalyptus grandis HOM05D002499 ORTHO05D002812 4.5e-06 55.5 77 37.7
MBI11_g31278_MAGBIO Magnolia biondii HOM05D002499 ORTHO05D002812 5.8e-06 55.1 77 41.6
Prupe.3G094400 Prunus persica HOM05D002499 ORTHO05D002812 5.8e-06 55.1 78 46.2
SHI13319 Sapria himalayana HOM05D002499 ORTHO05D002812 5.8e-06 55.1 77 42.9
Sed0022185 Sechium edule HOM05D002499 ORTHO05D002812 7.6e-06 54.7 77 37.7
THA.LOC104812453 Tarenaya hassleriana HOM05D002499 ORTHO05D002812 7.6e-06 54.7 45 62.2
CARHR125340 Cardamine hirsuta HOM05D002499 ORTHO05D002812 9.9e-06 54.3 45 62.2
Eucgr.C01425 Eucalyptus grandis HOM05D002499 ORTHO05D002812 9.9e-06 54.3 55 47.3
Oeu005939.1 Olea europaea HOM05D002499 ORTHO05D002812 9.9e-06 54.3 46 56.5
TWI12G0474 Tripterygium wilfordii HOM05D002499 ORTHO05D002812 9.9e-06 54.3 45 60.0


User provided reference genes

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