Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.8e-105 384.8 187 100.0
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 9.1e-75 283.9 153 94.1
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.3e-73 280.0 153 92.8
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 8.5e-73 277.3 153 91.5
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 1.2e-71 273.5 151 90.1
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.2e-71 273.5 153 89.5
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.6e-71 273.1 153 87.6
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.6e-71 273.1 153 88.9
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 4.7e-71 271.6 153 88.2
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 6.1e-71 271.2 153 88.2
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 7.9e-71 270.8 153 88.2
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 7.9e-71 270.8 153 88.2
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.8e-70 269.6 153 88.2
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.3e-70 269.2 153 86.9
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 3.0e-70 268.9 153 86.9
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 3.0e-70 268.9 153 86.9
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.0e-70 268.9 153 88.2
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 3.9e-70 268.5 153 87.6
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 3.9e-70 268.5 153 87.6
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 6.7e-70 267.7 153 88.2
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 8.8e-70 267.3 153 86.9
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 8.8e-70 267.3 153 86.9
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 1.1e-69 266.9 153 87.6
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 2.6e-69 265.8 152 86.2
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 4.4e-69 265.0 150 85.3
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 9.7e-69 263.8 153 85.0
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 9.7e-69 263.8 152 86.2
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 1.3e-68 263.5 153 85.0
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.3e-68 263.5 153 86.9
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.7e-68 263.1 153 85.6
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.7e-68 263.1 153 84.3
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 1.7e-68 263.1 153 85.0
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.7e-68 263.1 153 85.6
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 3.7e-68 261.9 153 83.7
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 3.7e-68 261.9 153 83.7
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 4.8e-68 261.5 153 84.3
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 6.3e-68 261.2 153 83.7
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.4e-67 260.0 152 84.2
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 2.4e-67 259.2 151 82.8
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 2.4e-67 259.2 152 83.6
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 5.3e-67 258.1 153 85.6
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 7.0e-67 257.7 153 83.0
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 9.1e-67 257.3 153 85.0
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 2.0e-66 256.1 150 84.0
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.0e-66 256.1 150 84.0
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.0e-66 256.1 150 84.0
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 2.0e-66 256.1 153 82.4
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 2.0e-66 256.1 150 84.0
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.6e-66 255.8 153 82.4
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.5e-66 255.4 150 84.0
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 3.5e-66 255.4 153 81.7
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 3.5e-66 255.4 170 77.6
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 4.5e-66 255.0 153 82.4
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 4.5e-66 255.0 166 78.3
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 4.5e-66 255.0 153 82.4
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 7.7e-66 254.2 153 81.0
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 7.7e-66 254.2 153 83.7
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 7.7e-66 254.2 153 81.7
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.0e-65 253.8 150 82.0
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.7e-65 253.1 153 82.4
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.2e-65 252.7 199 69.3
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.9e-65 252.3 180 76.7
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 2.9e-65 252.3 153 83.7
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 3.8e-65 251.9 153 82.4
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.8e-65 251.9 153 82.4
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 5.0e-65 251.5 153 84.3
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 6.5e-65 251.1 150 82.0
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 1.1e-64 250.4 150 82.0
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 1.1e-64 250.4 153 79.7
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.1e-64 250.4 150 81.3
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 2.5e-64 249.2 153 81.0
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.2e-64 248.8 153 81.7
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 5.5e-64 248.1 191 68.6
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 7.2e-64 247.7 153 80.4
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 7.2e-64 247.7 153 80.4
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 7.2e-64 247.7 153 81.7
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 7.2e-64 247.7 153 80.4
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 9.4e-64 247.3 153 79.7
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 1.6e-63 246.5 153 80.4
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.6e-63 246.5 151 80.8
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 2.7e-63 245.7 153 79.1
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 3.6e-63 245.4 153 79.7
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 3.6e-63 245.4 176 72.7
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 4.7e-63 245.0 153 79.7
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 6.1e-63 244.6 153 78.4
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 6.1e-63 244.6 152 80.3
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.0e-62 243.8 167 74.9
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.4e-62 243.4 167 74.9
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.4e-62 243.4 167 74.9
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.3e-62 242.7 151 79.5
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 3.0e-62 242.3 181 71.8
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 3.0e-62 242.3 153 77.1
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 5.2e-62 241.5 133 88.7
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 6.7e-62 241.1 152 75.7
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.5e-61 240.0 210 63.3
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 2.0e-61 239.6 153 75.8
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.6e-61 239.2 153 77.8
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 4.4e-61 238.4 153 77.8
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 5.7e-61 238.0 133 86.5
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 9.7e-61 237.3 133 88.0
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.7e-60 236.5 151 75.5
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 2.2e-60 236.1 178 69.1
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 2.8e-60 235.7 156 77.6
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.7e-60 235.3 153 75.2
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 3.7e-60 235.3 161 75.8
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 8.2e-60 234.2 153 73.2
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 3.1e-59 232.3 224 60.3
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 7.0e-59 231.1 133 83.5
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 7.0e-59 231.1 133 85.0
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 9.1e-59 230.7 127 89.0
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.6e-58 229.9 153 75.8
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 3.5e-58 228.8 150 79.3
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 5.9e-58 228.0 132 84.1
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 5.9e-58 228.0 132 84.1
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 7.7e-58 227.6 150 76.7
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 5.0e-57 224.9 152 70.4
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 6.5e-57 224.6 159 71.1
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.1e-56 223.8 129 85.3
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.1e-56 223.8 151 74.8
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 1.2e-55 220.3 134 79.9
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 4.7e-55 218.4 133 79.7
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.0e-54 215.7 132 81.1
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 3.0e-54 215.7 124 91.1
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 6.8e-54 214.5 173 65.3
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 4.4e-53 211.8 133 76.7
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 4.4e-53 211.8 121 86.8
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-53 211.5 121 86.0
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 5.7e-53 211.5 121 86.0
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-52 210.3 121 85.1
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 3.7e-52 208.8 123 84.6
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.1e-51 207.2 142 69.7
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 2.4e-51 206.1 133 75.9
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.1e-48 197.2 158 69.6
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 1.5e-48 196.8 108 86.1
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.9e-48 196.4 110 83.6
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-48 195.7 114 85.1
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 4.2e-48 195.3 135 68.9
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 3.0e-46 189.1 134 67.9
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 8.8e-46 187.6 150 68.7
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.6e-45 186.0 126 79.4
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 4.4e-45 185.3 108 80.6
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 3.8e-41 172.2 109 81.7
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 4.3e-40 168.7 132 68.2
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 4.7e-39 165.2 90 88.9
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.4e-37 159.1 94 87.2
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 8.6e-33 144.4 83 88.0
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 2.1e-31 139.8 115 65.2
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.3e-28 130.6 103 67.0
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.3e-28 130.6 100 66.0
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 1.3e-28 130.6 74 79.7
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.1e-27 125.6 73 89.0
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.6e-25 118.2 82 69.5
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.1e-24 117.5 103 62.1
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.5e-21 104.8 74 67.6
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.7e-18 96.3 64 71.9
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 6.6e-17 91.7 65 70.8
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.1e-16 90.9 60 78.3
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 7.3e-16 88.2 130 40.0
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.8e-15 86.3 129 39.5
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 1.8e-14 83.6 49 85.7
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 1.8e-14 83.6 49 85.7
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 7.6e-13 78.2 108 49.1
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.4e-11 73.2 53 64.2
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 4.6e-10 68.9 112 36.6


User provided reference genes

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