Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044973 Camellia sinensis var. sinensis HOM05D007402 ORTHO05D003673 3.3e-59 231.5 117 100.0
GSVIVG01025143001 Vitis vinifera HOM05D007402 ORTHO05D003673 1.7e-34 149.4 129 60.5
Actinidia24081 Actinidia chinensis HOM05D007402 ORTHO05D003673 2.7e-32 142.1 170 50.0
vmacro00259 Vaccinium macrocarpon HOM05D007402 ORTHO05D003673 8.6e-31 137.1 170 47.6
Cpa.g.sc13.131 Carica papaya HOM05D007402 ORTHO05D003673 4.0e-28 128.3 164 43.9
VMungo1127G1215 Vigna mungo HOM05D007402 ORTHO05D003673 1.5e-27 126.3 171 43.3
Lsat_1_v5_gn_2_97841 Lactuca sativa HOM05D007402 ORTHO05D003673 2.6e-27 125.6 171 42.1
Peaxi162Scf00454g00034 Petunia axillaris HOM05D007402 ORTHO05D003673 2.6e-27 125.6 171 43.9
Nitab4.5_0000131g0200 Nicotiana tabacum HOM05D007402 ORTHO05D003673 2.2e-26 122.5 177 41.2
Nitab4.5_0005913g0040 Nicotiana tabacum HOM05D007402 ORTHO05D003673 3.7e-26 121.7 171 42.7
Sopen04g030130 Solanum pennellii HOM05D007402 ORTHO05D003673 8.3e-26 120.6 171 41.5
Lalb_Chr19g0137401 Lupinus albus HOM05D007402 ORTHO05D003673 1.9e-25 119.4 171 41.5
vmacro00255 Vaccinium macrocarpon HOM05D007402 ORTHO05D003673 3.2e-25 118.6 170 44.1
PGSC0003DMG400009341 Solanum tuberosum HOM05D007402 ORTHO05D003673 1.6e-24 116.3 171 40.9
Solyc04g076370.4 Solanum lycopersicum HOM05D007402 ORTHO05D003673 2.0e-24 115.9 171 40.4
DCAR_018829 Daucus carota HOM05D007402 ORTHO05D003673 7.8e-24 114.0 171 42.1
CAN.G475.21 Capsicum annuum HOM05D007402 ORTHO05D003673 1.0e-23 113.6 171 41.5
SHI06049 Sapria himalayana HOM05D007402 ORTHO05D003673 1.1e-22 110.2 129 45.0
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 2.1e-21 105.9 166 36.7
HanXRQChr13g0419931 Helianthus annuus HOM05D007402 ORTHO05D003673 3.6e-21 105.1 177 37.3
vmacro13688 Vaccinium macrocarpon HOM05D007402 ORTHO05D003673 4.7e-21 104.8 170 39.4
Rhsim13G0092700 Rhododendron simsii HOM05D007402 ORTHO05D003673 1.8e-20 102.8 171 39.2
ECA238G4713 Erigeron canadensis HOM05D007402 ORTHO05D003673 1.3e-18 96.7 80 55.0
THA.LOC104800555 Tarenaya hassleriana HOM05D007402 ORTHO05D003673 2.2e-18 95.9 170 34.1
CDE02G0959 Ceratophyllum demersum HOM05D007402 ORTHO05D003673 8.3e-18 94.0 171 35.7
vmacro03176 Vaccinium macrocarpon HOM05D007402 ORTHO05D009725 8.3e-18 94.0 68 69.1
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 2.1e-16 89.4 118 40.7
CSS0032254 Camellia sinensis var. sinensis HOM05D007402 ORTHO05D003673 2.5e-14 82.4 182 35.2
Dinv03605 Davidia involucrata HOM05D000280 ORTHO05D000632 2.8e-13 79.0 55 65.5
Cc01_g11540 Coffea canephora HOM05D007402 ORTHO05D003673 3.1e-12 75.5 160 32.5
Potri.018G093700 Populus trichocarpa HOM05D007402 ORTHO05D003673 9.9e-11 70.5 96 43.8
Manes.11G141800 Manihot esculenta HOM05D007402 ORTHO05D003673 1.7e-10 69.7 96 41.7
Sabra18G0080600 Salix brachista HOM05D007402 ORTHO05D003673 1.7e-10 69.7 96 40.6
Thecc.09G259500 Theobroma cacao HOM05D007402 ORTHO05D003673 2.9e-10 68.9 96 40.6
Ciclev10028524m.g Citrus clementina HOM05D007402 ORTHO05D003673 6.4e-10 67.8 96 41.7
Duzib168G2154 Durio zibethinus HOM05D007402 ORTHO05D003673 6.4e-10 67.8 96 39.6
Hma1.2p1_0071F.1_g038080 Hydrangea macrophylla HOM05D007402 ORTHO05D003673 6.4e-10 67.8 96 40.6
Haze_23904 Corylus avellana HOM05D007402 ORTHO05D003673 8.3e-10 67.4 93 41.9
Aqoxy4G03220 Aquilegia oxysepala HOM05D007402 ORTHO05D003673 1.1e-09 67.0 96 42.7
MBI06_g23074_MAGBIO Magnolia biondii HOM05D007402 ORTHO05D003673 1.4e-09 66.6 55 61.8
Atru.BG.118.p Acer truncatum HOM05D007402 ORTHO05D003673 1.9e-09 66.2 97 40.2
EL10Ac6g13413 Beta vulgaris HOM05D007402 ORTHO05D003673 1.9e-09 66.2 129 31.0
QL01p037328 Quercus lobata HOM05D007402 ORTHO05D003673 1.9e-09 66.2 96 38.5
Phvul.011G073100 Phaseolus vulgaris HOM05D007402 ORTHO05D003673 2.4e-09 65.9 96 39.6
Sed0010667 Sechium edule HOM05D007402 ORTHO05D003673 2.4e-09 65.9 96 39.6
Thhalv10016739m.g Eutrema salsugineum HOM05D007402 ORTHO05D003673 3.2e-09 65.5 172 27.9
Gohir.A07G091500 Gossypium hirsutum HOM05D007486 ORTHO05D003673 4.1e-09 65.1 81 39.5
Nn7g37996 Nelumbo nucifera HOM05D007402 ORTHO05D003673 4.1e-09 65.1 96 40.6
Glyma.12G071400 Glycine max HOM05D007402 ORTHO05D003673 5.4e-09 64.7 96 38.5
RcHm_v2.0_Chr5g0060431 Rosa chinensis HOM05D007402 ORTHO05D003673 5.4e-09 64.7 96 38.5
RcHm_v2.0_Chr7g0223131 Rosa chinensis HOM05D007402 ORTHO05D003673 5.4e-09 64.7 96 38.5
ATR0068G034 Amborella trichopoda HOM05D007402 ORTHO05D003673 7.1e-09 64.3 97 37.1
FvH4_3g33090 Fragaria vesca HOM05D007402 ORTHO05D003673 7.1e-09 64.3 96 38.5
PGR004G2397 Punica granatum HOM05D007402 ORTHO05D003673 7.1e-09 64.3 97 40.2
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 7.1e-09 64.3 102 35.3
Gohir.D08G018400 Gossypium hirsutum HOM05D007402 ORTHO05D003673 9.2e-09 63.9 91 39.6
Gorai.004G012900 Gossypium raimondii HOM05D007402 ORTHO05D003673 9.2e-09 63.9 91 39.6
Prupe.6G095500 Prunus persica HOM05D007402 ORTHO05D003673 9.2e-09 63.9 96 37.5
TPR.G36407 Trifolium pratense HOM05D007402 ORTHO05D003673 9.2e-09 63.9 96 39.6
CANSAT54G0200 Cannabis sativa HOM05D007402 ORTHO05D003673 1.6e-08 63.2 96 35.4
Cfa011358 Carpinus fangiana HOM05D007402 ORTHO05D003673 1.6e-08 63.2 94 39.4
Lj3g0014788 Lotus japonicus HOM05D007402 ORTHO05D003673 1.6e-08 63.2 96 37.5
CiPaw.14G078200 Carya illinoinensis HOM05D007402 ORTHO05D003673 2.1e-08 62.8 93 39.8
CsaV3_1G013010 Cucumis sativus L. HOM05D007402 ORTHO05D003673 2.1e-08 62.8 97 40.2
Dinv03604 Davidia involucrata HOM05D007402 ORTHO05D003673 2.1e-08 62.8 29 100.0
Medtr4g060570 Medicago truncatula HOM05D007402 ORTHO05D003673 2.1e-08 62.8 96 38.5
TAR623G1033 Trochodendron aralioides HOM05D007402 ORTHO05D003673 2.1e-08 62.8 96 38.5
Migut.D02192 Erythranthe guttata HOM05D007402 ORTHO05D003673 3.5e-08 62.0 85 44.7
AUR62034282 Chenopodium quinoa HOM05D007402 ORTHO05D003673 4.6e-08 61.6 110 35.5
ClCG03G002330 Citrullus lanatus HOM05D007402 ORTHO05D003673 4.6e-08 61.6 94 39.4
Lj2P1035T18 Lonicera japonica HOM05D007402 ORTHO05D003673 4.6e-08 61.6 94 40.4
Os06g0184866 Oryza sativa ssp. japonica HOM05D007486 ORTHO05D003673 7.8e-08 60.8 90 37.8
TWI18G0642 Tripterygium wilfordii HOM05D007486 ORTHO05D003673 7.8e-08 60.8 113 31.9
arahy.Tifrunner.gnm1.ann1.30WSHQ Arachis hypogaea HOM05D007402 ORTHO05D003673 1.0e-07 60.5 97 39.2
AUR62029362 Chenopodium quinoa HOM05D007402 ORTHO05D003673 1.3e-07 60.1 110 35.5
MD03G1104000 Malus domestica HOM05D007402 ORTHO05D003673 1.7e-07 59.7 94 36.2
MD11G1131200 Malus domestica HOM05D007402 ORTHO05D003673 2.3e-07 59.3 94 36.2
TWI75G1283 Tripterygium wilfordii HOM05D007402 ORTHO05D003673 2.3e-07 59.3 96 37.5
Ca_19244_v3 Cicer arietinum L. HOM05D007402 ORTHO05D003673 3.9e-07 58.5 94 38.3
Gohir.A08G008400 Gossypium hirsutum HOM05D007402 ORTHO05D003673 5.1e-07 58.2 96 35.4
MELO3C005032.2 Cucumis melo HOM05D007402 ORTHO05D003673 6.6e-07 57.8 97 38.1
MBI06_g43058_MAGBIO Magnolia biondii HOM05D007402 ORTHO05D003673 8.6e-07 57.4 29 86.2
CDE08G0247 Ceratophyllum demersum HOM05D007486 ORTHO05D003673 1.1e-06 57.0 77 33.8
MBI06_g23075_MAGBIO Magnolia biondii HOM05D007402 ORTHO05D003673 1.1e-06 57.0 95 35.8
Hund16389 Selenicereus undatus HOM05D007402 ORTHO05D003673 1.5e-06 56.6 97 33.0
SGA_v2.0_scaffold97G29181 Striga asiatica HOM05D007402 ORTHO05D003673 1.5e-06 56.6 96 34.4
Sabra02G0188800 Salix brachista HOM05D007486 ORTHO05D003673 1.9e-06 56.2 102 32.4
Atru.chr3.3352 Acer truncatum HOM05D007402 ORTHO05D003673 2.5e-06 55.8 99 35.4
SalBow3G0099 Salvia bowleyana HOM05D007402 ORTHO05D003673 2.5e-06 55.8 96 36.5
Sp4g10640 Schrenkiella parvula HOM05D007402 ORTHO05D003673 4.3e-06 55.1 96 33.3
BolC4t23878H Brassica oleracea HOM05D007402 ORTHO05D003673 5.6e-06 54.7 97 35.1
CANSAT01G2277 Cannabis sativa HOM05D007486 ORTHO05D003673 5.6e-06 54.7 102 30.4
CANSAT01G2464 Cannabis sativa HOM05D007486 ORTHO05D003673 5.6e-06 54.7 102 30.4
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 5.6e-06 54.7 134 26.1
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 5.6e-06 54.7 92 33.7
HanXRQChr06g0172221 Helianthus annuus HOM05D007486 ORTHO05D003673 7.3e-06 54.3 93 35.5
Lalb_Chr03g0027151 Lupinus albus HOM05D007402 ORTHO05D003673 7.3e-06 54.3 96 35.4
AL4G22480 Arabidopsis lyrata HOM05D007402 ORTHO05D003673 9.5e-06 53.9 96 32.3
AT2G27800 Arabidopsis thaliana HOM05D007402 ORTHO05D003673 9.5e-06 53.9 96 32.3


User provided reference genes

Program Settings