Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 7.0e-272 940.3 562 100.0
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.3e-249 866.3 538 97.4
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 2.2e-188 662.9 562 74.6
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 1.7e-177 626.7 560 71.8
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 5.7e-173 611.7 550 70.7
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 1.6e-170 603.6 534 72.7
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 6.5e-169 598.2 588 67.0
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 8.3e-164 581.3 560 68.6
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 1.3e-161 573.9 551 66.2
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.0e-158 562.8 557 64.8
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 5.2e-158 562.0 558 65.2
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 1.5e-157 560.5 581 63.7
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.7e-157 558.5 560 66.4
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 9.8e-157 557.8 570 66.5
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 2.0e-154 550.1 575 64.0
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 4.2e-152 542.3 560 65.0
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 1.2e-151 540.8 558 59.1
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 6.1e-151 538.5 587 62.9
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 1.4e-150 537.3 560 66.6
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 4.0e-150 535.8 548 63.9
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 5.2e-150 535.4 550 60.0
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 8.9e-150 534.6 555 66.7
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 1.2e-149 534.3 587 63.9
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 3.4e-149 532.7 563 65.9
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 5.7e-149 531.9 591 62.8
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 1.3e-148 530.8 546 62.3
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 1.7e-148 530.4 567 66.0
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 1.1e-147 527.7 559 63.1
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 1.4e-147 527.3 567 66.3
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.8e-147 526.9 591 62.9
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 3.2e-147 526.2 560 60.5
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 2.0e-146 523.5 549 65.8
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 4.6e-146 522.3 603 60.5
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 3.9e-145 519.2 575 64.5
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 1.1e-144 517.7 553 62.7
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 2.5e-144 516.5 555 64.9
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 3.3e-144 516.2 555 62.3
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 1.2e-143 514.2 550 56.4
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 1.6e-143 513.8 561 62.7
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 3.6e-143 512.7 563 59.9
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 4.7e-143 512.3 551 65.0
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 8.9e-142 508.1 561 61.1
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 8.9e-142 508.1 541 63.4
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 2.0e-141 506.9 560 61.6
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 4.4e-141 505.8 570 57.9
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 1.7e-140 503.8 561 60.1
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.7e-140 503.8 574 59.9
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 2.9e-140 503.1 553 65.6
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 3.7e-140 502.7 568 59.9
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 4.9e-140 502.3 572 63.5
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 8.3e-140 501.5 539 62.0
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 1.4e-139 500.7 575 58.3
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 4.1e-139 499.2 559 60.1
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 5.4e-139 498.8 549 58.7
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 5.4e-139 498.8 569 58.0
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 1.2e-138 497.7 567 59.6
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 1.6e-138 497.3 556 62.1
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 2.7e-138 496.5 569 58.7
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 3.5e-138 496.1 555 60.7
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 3.5e-138 496.1 622 59.3
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 4.6e-138 495.7 579 58.0
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 6.0e-138 495.4 563 59.3
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 2.3e-137 493.4 545 61.7
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 3.0e-137 493.0 615 57.6
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 6.6e-137 491.9 550 62.0
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 8.6e-137 491.5 542 62.7
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 1.5e-136 490.7 574 58.5
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 4.3e-136 489.2 551 61.3
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 1.6e-135 487.3 555 61.4
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 1.6e-135 487.3 563 59.0
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 1.1e-134 484.6 554 61.2
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 1.4e-134 484.2 589 58.6
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 4.0e-134 482.6 552 59.1
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 4.0e-134 482.6 574 57.5
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 5.2e-134 482.3 578 59.3
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 5.2e-134 482.3 567 52.6
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 8.9e-134 481.5 549 58.7
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 8.9e-134 481.5 560 57.7
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 4.4e-133 479.2 560 60.2
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 1.3e-132 477.6 544 59.0
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 4.9e-132 475.7 550 55.5
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 2.4e-131 473.4 559 59.2
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 3.2e-131 473.0 567 57.1
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 4.1e-131 472.6 576 59.4
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 1.6e-130 470.7 564 56.4
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 2.7e-130 469.9 553 59.5
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 3.9e-129 466.1 553 60.4
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 1.6e-127 460.7 574 54.7
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 6.4e-124 448.7 562 61.6
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 1.9e-123 447.2 573 58.3
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 4.1e-123 446.0 531 49.9
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 7.1e-123 445.3 555 56.6
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 2.7e-122 443.4 565 57.3
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.2e-119 434.5 523 51.6
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.8e-119 433.3 543 57.3
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 3.6e-119 433.0 552 56.7
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 6.2e-119 432.2 555 54.8
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.8e-118 430.6 545 53.9
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 4.0e-118 429.5 543 54.3
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 5.2e-118 429.1 545 48.8
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 3.8e-116 422.9 555 54.1
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 3.8e-116 422.9 542 55.9
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 8.4e-116 421.8 546 55.5
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 2.5e-112 410.2 536 58.2
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 2.1e-111 407.1 479 57.2
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.1e-110 404.8 545 54.5
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 3.4e-109 399.8 540 54.1
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 5.1e-105 386.0 364 68.4
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 6.9e-102 375.6 378 65.6
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 1.5e-101 374.4 612 50.3
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 1.7e-92 344.4 358 59.5
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 2.2e-92 344.0 558 48.7
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 5.7e-88 329.3 530 49.6
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 6.5e-84 315.8 523 45.3
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 2.7e-82 310.5 529 41.8
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 1.6e-79 301.2 501 45.3
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 2.0e-77 294.3 496 41.9
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 1.1e-72 278.5 581 36.3
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 1.8e-65 254.6 360 54.2
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 6.7e-65 252.7 169 79.3
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 6.5e-60 236.1 148 81.8
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 7.2e-59 232.6 187 68.4
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 1.1e-56 225.3 253 55.3
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.1e-54 218.8 125 92.8
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 2.9e-52 210.7 244 49.6
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 4.7e-50 203.4 244 48.4
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 9.8e-48 195.7 391 44.8
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 3.5e-45 187.2 246 51.6
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 5.7e-40 169.9 189 54.0
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 5.7e-40 169.9 189 54.0
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 7.7e-37 159.5 237 41.4
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 7.5e-32 142.9 152 56.6
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 3.2e-30 137.5 103 70.9
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 4.3e-27 127.1 100 61.0
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 8.0e-26 122.9 154 53.2
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 8.6e-20 102.8 62 83.9
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 5.6e-19 100.1 257 33.5
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 9.8e-16 89.4 77 59.7
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 2.9e-15 87.8 62 71.0
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 2.9e-15 87.8 58 79.3
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 4.1e-14 84.0 74 67.6
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 4.1e-14 84.0 79 57.0
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 1.2e-13 82.4 67 71.6
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 2.1e-13 81.6 85 51.8
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 1.9e-11 75.1 101 46.5
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 2.5e-11 74.7 69 58.0
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.3e-09 68.2 80 53.8
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.0e-08 65.1 37 81.1
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 4.9e-07 60.5 67 55.2
MBI03_g15603_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.4e-06 58.9 78 48.7


User provided reference genes

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