Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.3e-199 699.5 344 100.0
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.2e-184 649.8 325 98.5
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 3.3e-147 525.4 327 80.7
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 3.1e-145 518.8 323 81.4
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 5.4e-142 508.1 327 79.2
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 1.6e-141 506.5 313 80.2
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 4.2e-134 481.9 320 75.9
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 4.6e-133 478.4 319 74.6
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 1.5e-131 473.4 333 72.1
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 4.3e-131 471.9 319 75.2
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 2.1e-130 469.5 316 74.1
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 4.5e-128 461.8 314 74.5
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 4.5e-128 461.8 314 74.5
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 2.2e-127 459.5 325 71.4
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 2.2e-127 459.5 324 69.8
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 2.9e-127 459.1 323 72.4
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 4.9e-127 458.4 324 72.2
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 8.4e-127 457.6 329 70.8
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 1.1e-126 457.2 249 86.7
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 1.9e-126 456.4 324 70.7
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 2.5e-126 456.1 318 72.0
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 3.2e-126 455.7 328 71.6
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 9.3e-126 454.1 318 71.4
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 2.1e-125 453.0 320 72.5
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 2.7e-125 452.6 323 70.9
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 3.5e-125 452.2 323 72.1
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 1.0e-124 450.7 323 70.0
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 2.3e-124 449.5 336 68.8
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 3.9e-124 448.7 316 71.8
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 5.1e-124 448.4 335 68.1
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 6.7e-124 448.0 336 68.5
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 4.3e-123 445.3 318 68.9
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 4.3e-123 445.3 325 68.9
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 1.3e-122 443.7 335 68.1
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 1.3e-122 443.7 323 71.2
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 1.6e-122 443.4 323 69.0
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 1.6e-122 443.4 324 69.1
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 3.7e-122 442.2 258 81.0
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 3.7e-122 442.2 327 68.5
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 8.2e-122 441.0 321 69.8
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 1.1e-121 440.7 312 70.5
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 1.8e-121 439.9 323 70.3
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 1.8e-121 439.9 321 69.5
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 2.4e-121 439.5 312 68.6
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 2.4e-121 439.5 310 70.0
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 3.1e-121 439.1 326 68.1
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 3.1e-121 439.1 311 69.5
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 3.1e-121 439.1 315 69.2
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 6.9e-121 438.0 321 69.8
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 1.2e-120 437.2 324 69.4
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 1.5e-120 436.8 310 69.7
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 1.0e-119 434.1 320 68.1
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 1.0e-119 434.1 271 77.1
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 1.3e-119 433.7 320 68.4
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 2.9e-119 432.6 318 69.5
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 3.8e-119 432.2 320 69.1
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 6.5e-119 431.4 249 79.5
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 8.4e-119 431.0 322 68.6
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 2.5e-118 429.5 321 69.2
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 4.2e-118 428.7 323 67.2
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 2.1e-117 426.4 311 67.5
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 6.1e-117 424.9 268 76.1
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 1.3e-116 423.7 324 65.1
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 1.8e-116 423.3 255 78.0
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 3.9e-116 422.2 312 66.7
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 3.9e-116 422.2 312 66.3
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 5.1e-116 421.8 320 67.5
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 6.7e-116 421.4 314 66.6
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 8.7e-116 421.0 254 78.3
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 1.5e-115 420.2 254 78.3
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 1.9e-115 419.9 312 67.6
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 1.9e-115 419.9 312 66.3
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 1.9e-115 419.9 312 66.3
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 3.3e-115 419.1 312 66.3
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 4.3e-115 418.7 313 67.1
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 4.3e-115 418.7 310 69.7
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 5.7e-115 418.3 311 67.8
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 1.6e-114 416.8 255 78.0
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 2.8e-114 416.0 273 74.0
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 1.1e-113 414.1 325 63.4
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 1.4e-113 413.7 313 64.9
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.4e-113 413.7 321 65.7
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 2.4e-113 412.9 323 63.8
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 3.1e-113 412.5 313 65.5
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 9.0e-113 411.0 254 78.0
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 2.0e-112 409.8 255 77.6
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 1.7e-111 406.8 312 65.1
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 2.9e-111 406.0 326 65.3
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 3.8e-111 405.6 311 65.6
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 1.4e-110 403.7 323 63.2
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 2.5e-110 402.9 312 63.1
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 6.1e-109 398.3 259 74.1
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 7.9e-109 397.9 313 63.6
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 2.3e-108 396.4 266 71.8
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 3.0e-108 396.0 243 76.1
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 3.9e-108 395.6 315 63.5
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 2.8e-106 389.4 259 71.8
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 6.3e-106 388.3 248 73.4
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.2e-104 384.0 252 71.0
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 2.6e-104 382.9 284 64.8
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.8e-100 370.2 249 68.7
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 5.7e-99 365.2 219 80.8
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 5.7e-99 365.2 267 70.4
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.3e-98 361.7 288 62.2
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 6.3e-98 361.7 208 81.7
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 3.6e-93 345.9 205 78.0
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 3.6e-93 345.9 206 75.7
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.3e-82 310.8 249 58.6
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 2.7e-80 303.1 314 54.8
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.0e-79 301.2 247 61.1
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.3e-79 300.8 248 61.3
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 7.2e-78 295.0 250 56.8
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 5.2e-76 288.9 267 53.6
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 1.5e-75 287.3 258 54.3
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 2.3e-71 273.5 165 77.6
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 1.9e-70 270.4 233 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 6.4e-66 255.4 218 55.5
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 6.2e-61 238.8 157 68.8
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.7e-31 141.0 94 67.0
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 9.0e-28 128.6 86 69.8
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 9.3e-25 118.6 264 33.0
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 2.4e-20 104.0 269 29.4
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 6.9e-20 102.4 60 78.3
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 3.0e-15 87.0 55 78.2
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 1.1e-14 85.1 80 61.2
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 9.0e-12 75.5 285 28.4
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 4.5e-11 73.2 91 41.8
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 4.9e-10 69.7 61 55.7
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 4.9e-10 69.7 61 55.7
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 7.1e-09 65.9 55 50.9
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 2.1e-08 64.3 47 57.4
Rhsim13G0060400 Rhododendron simsii HOM05D001179 ORTHO05D339156 5.1e-07 59.7 47 59.6
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 5.7e-06 56.2 113 31.0


User provided reference genes

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