Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1537.3 786 100.0
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1312.7 786 86.9
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1260.0 786 83.5
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1253.0 786 82.4
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1219.1 702 88.6
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1214.5 790 80.3
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1208.4 794 78.8
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1207.6 784 81.0
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1205.7 733 83.8
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1203.7 787 79.4
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1198.3 787 79.2
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1198.0 780 79.7
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1196.8 784 79.6
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1191.8 769 80.8
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1191.0 767 80.4
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1191.0 780 79.0
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1189.5 784 79.2
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1189.5 780 79.5
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1188.3 774 79.3
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1186.0 792 78.7
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1184.1 788 78.8
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1184.1 784 78.7
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1180.6 795 78.0
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1179.9 784 78.8
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1174.8 725 84.0
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1174.5 795 77.9
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1174.1 783 78.2
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1173.7 751 80.2
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1172.1 791 78.3
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1170.6 788 77.0
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1169.5 738 81.2
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1168.3 780 78.7
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1166.4 782 78.3
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1166.0 784 77.2
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1164.8 739 81.1
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1164.4 797 77.5
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1162.5 829 74.2
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1159.4 732 81.0
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1157.9 779 77.9
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1156.7 769 78.5
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1156.0 792 75.5
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1153.7 789 76.6
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1148.7 784 76.4
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1147.5 786 76.3
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1146.7 775 77.2
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1146.3 721 81.8
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 0.0e+00 1135.2 853 72.3
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1134.0 784 75.8
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1132.9 789 75.8
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1124.0 709 80.1
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1122.5 778 74.9
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 0.0e+00 1118.2 804 74.9
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 0.0e+00 1108.6 734 77.4
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 0.0e+00 1107.8 827 73.2
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 0.0e+00 1106.3 787 73.2
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 0.0e+00 1104.0 725 79.3
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1099.3 791 74.1
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1099.0 787 74.2
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1093.2 789 73.6
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 0.0e+00 1088.9 760 75.7
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 0.0e+00 1088.9 781 73.1
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1086.6 790 73.3
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1086.2 789 72.4
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1086.2 789 72.4
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 0.0e+00 1085.5 800 73.2
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 0.0e+00 1082.0 650 84.5
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1080.9 760 74.3
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 0.0e+00 1078.9 733 75.6
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 2.2e-311 1072.0 709 78.4
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 1.1e-310 1069.7 786 72.9
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 1.8e-310 1068.9 787 71.9
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 3.4e-309 1064.7 778 72.1
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 5.5e-307 1057.4 685 80.0
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 2.7e-306 1055.0 783 71.9
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 6.1e-306 1053.9 783 71.5
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 1.0e-305 1053.1 777 71.9
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 9.7e-304 1046.6 780 70.5
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 9.1e-302 1040.0 774 70.2
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 9.1e-302 1040.0 803 70.0
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 3.5e-301 1038.1 780 72.3
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 8.5e-300 1033.5 762 71.0
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.4e-299 1032.7 786 70.1
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 1.4e-299 1032.7 742 71.3
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 1.9e-299 1032.3 785 69.8
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 2.5e-299 1031.9 787 70.4
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 1.6e-298 1029.2 785 69.7
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 2.1e-298 1028.9 793 70.0
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 3.9e-297 1024.6 790 69.2
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 5.2e-297 1024.2 781 70.2
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 4.4e-296 1021.1 780 69.9
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 7.4e-296 1020.4 781 69.9
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 2.2e-295 1018.8 785 69.4
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 2.8e-295 1018.5 781 69.5
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 2.6e-293 1011.9 786 69.1
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.6e-293 1011.9 704 75.6
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 5.7e-288 994.2 749 71.0
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 2.9e-255 885.6 638 75.7
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.5e-243 846.7 583 73.1
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.6e-242 843.2 583 72.6
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 1.0e-236 823.9 729 58.3
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 1.6e-234 816.6 743 58.4
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 1.8e-233 813.1 720 60.0
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.1e-230 803.9 734 57.8
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 1.4e-230 803.5 728 59.6
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 4.8e-226 788.5 541 68.8
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 6.9e-217 758.1 531 68.5
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 3.0e-212 742.7 529 67.7
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.3e-196 689.9 543 63.0
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.2e-190 669.5 414 79.0
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 9.1e-177 624.8 403 79.2
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 8.3e-170 601.7 414 69.6
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 9.2e-153 545.0 343 79.3
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.8e-132 475.7 269 84.4
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 5.1e-103 379.8 689 36.3
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 2.5e-102 377.5 491 43.2
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 1.0e-98 365.5 625 42.1
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.6e-96 358.2 267 65.5
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 3.3e-94 350.5 295 64.1
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 8.2e-93 345.9 283 68.9
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.1e-72 278.1 351 49.0
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 1.4e-63 248.8 743 29.9
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.1e-41 176.0 99 81.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 2.8e-40 171.4 83 95.2
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 4.0e-31 141.0 121 62.8
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.0e-30 138.7 159 52.2
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 2.6e-30 138.3 138 58.0
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 5.8e-22 110.5 169 44.4
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 3.7e-21 107.8 54 87.0
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 1.2e-16 92.8 103 48.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 5.8e-14 84.0 75 58.7
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 2.4e-12 78.6 124 47.6
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 1.0e-10 73.2 41 80.5
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 2.3e-10 72.0 74 54.1
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.2e-08 66.2 80 48.8
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.4e-07 62.8 374 23.5
Actinidia37487 Actinidia chinensis HOM05D005554 ORTHO05D058019 5.2e-07 60.8 65 56.9
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 2.0e-06 58.9 85 43.5


User provided reference genes

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