Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044514 Camellia sinensis var. sinensis HOM05D000606 ORTHO05D109867 1.3e-35 152.5 75 100.0
CSS0015905 Camellia sinensis var. sinensis HOM05D000606 ORTHO05D002249 2.3e-13 78.6 53 71.7
SalBow4G2337 Salvia bowleyana HOM05D000606 ORTHO05D002249 5.2e-13 77.4 53 71.7
Dinv36720 Davidia involucrata HOM05D000606 ORTHO05D002249 6.8e-13 77.0 53 71.7
Migut.J01086 Erythranthe guttata HOM05D000606 ORTHO05D002249 6.8e-13 77.0 53 71.7
SGA_v2.0_scaffold10G05171 Striga asiatica HOM05D000606 ORTHO05D002249 6.8e-13 77.0 53 71.7
SGA_v2.0_scaffold62G21563 Striga asiatica HOM05D000606 ORTHO05D002249 6.8e-13 77.0 53 71.7
Dinv42260 Davidia involucrata HOM05D000606 ORTHO05D002249 8.8e-13 76.6 53 69.8
CAN.G1889.2 Capsicum annuum HOM05D000606 ORTHO05D002249 1.2e-12 76.3 53 71.7
HanXRQChr09g0238861 Helianthus annuus HOM05D000606 ORTHO05D002249 1.2e-12 76.3 53 71.7
Nitab4.5_0010879g0010 Nicotiana tabacum HOM05D000606 ORTHO05D002249 1.2e-12 76.3 53 71.7
Solyc03g119490.4 Solanum lycopersicum HOM05D000606 ORTHO05D002249 1.2e-12 76.3 53 71.7
Sopen03g038340 Solanum pennellii HOM05D000606 ORTHO05D002249 1.2e-12 76.3 53 71.7
PGSC0003DMG403005720 Solanum tuberosum HOM05D000606 ORTHO05D002249 1.2e-12 76.3 53 71.7
Cc06_g10630 Coffea canephora HOM05D000606 ORTHO05D002249 2.0e-12 75.5 53 71.7
Haze_25838 Corylus avellana HOM05D000606 ORTHO05D002249 2.0e-12 75.5 53 69.8
Lj7A667G64 Lonicera japonica HOM05D000606 ORTHO05D002249 2.6e-12 75.1 50 72.0
MSTRG.19545 Avicennia marina HOM05D000606 ORTHO05D002249 3.4e-12 74.7 53 69.8
Hma1.2p1_0785F.1_g217370 Hydrangea macrophylla HOM05D000606 ORTHO05D002249 3.4e-12 74.7 53 69.8
Nitab4.5_0008421g0040 Nicotiana tabacum HOM05D000606 ORTHO05D002249 4.4e-12 74.3 43 86.0
vmacro10844 Vaccinium macrocarpon HOM05D000606 ORTHO05D002249 4.4e-12 74.3 53 67.9
GSVIVG01015283001 Vitis vinifera HOM05D000606 ORTHO05D002249 4.4e-12 74.3 50 74.0
ECA238G2809 Erigeron canadensis HOM05D000606 ORTHO05D002249 7.5e-12 73.6 50 70.0
HanXRQChr10g0318871 Helianthus annuus HOM05D000606 ORTHO05D002249 7.5e-12 73.6 48 72.9
TAR636G0063 Trochodendron aralioides HOM05D000606 ORTHO05D002249 7.5e-12 73.6 50 74.0
MBI04_g07006_MAGBIO Magnolia biondii HOM05D000606 ORTHO05D002249 1.3e-11 72.8 53 67.9
PSO063G4689 Papaver somniferum HOM05D000606 ORTHO05D002249 1.3e-11 72.8 53 67.9
Peaxi162Scf00015g00944 Petunia axillaris HOM05D000606 ORTHO05D002249 1.3e-11 72.8 48 72.9
Eucgr.C03714 Eucalyptus grandis HOM05D000606 ORTHO05D002249 1.7e-11 72.4 50 72.0
Lsat_1_v5_gn_5_145221 Lactuca sativa HOM05D000606 ORTHO05D002249 2.2e-11 72.0 53 64.2
Gohir.A13G195100 Gossypium hirsutum HOM05D000606 ORTHO05D002249 2.8e-11 71.6 53 66.0
Gohir.D13G200801 Gossypium hirsutum HOM05D000606 ORTHO05D002249 2.8e-11 71.6 53 66.0
Gorai.013G229600 Gossypium raimondii HOM05D000606 ORTHO05D002249 2.8e-11 71.6 53 66.0
PGR044G0589 Punica granatum HOM05D000606 ORTHO05D002249 2.8e-11 71.6 48 70.8
Rhsim05G0026200 Rhododendron simsii HOM05D000606 ORTHO05D025222 2.8e-11 71.6 43 81.4
Ciclev10008771m.g Citrus clementina HOM05D000606 ORTHO05D002249 3.7e-11 71.2 53 66.0
COL.COLO4_34723 Corchorus olitorius HOM05D000606 ORTHO05D002249 3.7e-11 71.2 50 70.0
Duzib150G0078 Durio zibethinus HOM05D000606 ORTHO05D002249 3.7e-11 71.2 50 70.0
Duzib187G0462 Durio zibethinus HOM05D000606 ORTHO05D002249 3.7e-11 71.2 50 70.0
PSO832G4400 Papaver somniferum HOM05D000606 ORTHO05D002249 3.7e-11 71.2 53 66.0
QL02p040820 Quercus lobata HOM05D000606 ORTHO05D002249 3.7e-11 71.2 50 70.0
TWI63G1088 Tripterygium wilfordii HOM05D000606 ORTHO05D002249 4.8e-11 70.9 50 68.0
Atru.chr7.1482 Acer truncatum HOM05D000606 ORTHO05D002249 6.3e-11 70.5 50 70.0
ClCG11G002030 Citrullus lanatus HOM05D000606 ORTHO05D002249 6.3e-11 70.5 53 64.2
Manes.03G027800 Manihot esculenta HOM05D000606 ORTHO05D002249 6.3e-11 70.5 50 70.0
Actinidia17512 Actinidia chinensis HOM05D000606 ORTHO05D002249 1.1e-10 69.7 53 69.8
Actinidia39775 Actinidia chinensis HOM05D000606 ORTHO05D002249 1.1e-10 69.7 53 69.8
CsaV3_2G001800 Cucumis sativus L. HOM05D000606 ORTHO05D025222 1.1e-10 69.7 56 67.9
FvH4_1g06420 Fragaria vesca HOM05D000606 ORTHO05D002249 1.1e-10 69.7 50 68.0
FAN19G2395 Fragaria x ananassa HOM05D000606 ORTHO05D002249 1.1e-10 69.7 50 68.0
FAN23G0385 Fragaria x ananassa HOM05D000606 ORTHO05D002249 1.1e-10 69.7 50 68.0
FAN26G0057 Fragaria x ananassa HOM05D000606 ORTHO05D002249 1.1e-10 69.7 50 68.0
FAN26G1476 Fragaria x ananassa HOM05D000606 ORTHO05D002249 1.1e-10 69.7 50 68.0
FAN28G2283 Fragaria x ananassa HOM05D000606 ORTHO05D002249 1.1e-10 69.7 50 68.0
RcHm_v2.0_Chr2g0092161 Rosa chinensis HOM05D000606 ORTHO05D002249 1.1e-10 69.7 50 68.0
Sabra18G0060400 Salix brachista HOM05D000606 ORTHO05D002249 1.1e-10 69.7 50 68.0
Cpa.g.sc78.31 Carica papaya HOM05D000606 ORTHO05D002249 1.4e-10 69.3 53 62.3
Thecc.09G098600 Theobroma cacao HOM05D000606 ORTHO05D002249 1.4e-10 69.3 45 73.3
Lj2g0018660 Lotus japonicus HOM05D000606 ORTHO05D002249 1.8e-10 68.9 53 62.3
Nn8g39039 Nelumbo nucifera HOM05D000606 ORTHO05D002249 1.8e-10 68.9 68 55.9
Sed0000890 Sechium edule HOM05D000606 ORTHO05D002249 1.8e-10 68.9 53 60.4
CiPaw.04G155200 Carya illinoinensis HOM05D000606 ORTHO05D002249 2.4e-10 68.6 50 66.0
MELO3C004594.2 Cucumis melo HOM05D000606 ORTHO05D002249 2.4e-10 68.6 50 66.0
DCAR_012029 Daucus carota HOM05D000606 ORTHO05D002249 2.4e-10 68.6 45 71.1
Potri.018G068500 Populus trichocarpa HOM05D000606 ORTHO05D002249 2.4e-10 68.6 45 71.1
Aqoxy2G02433 Aquilegia oxysepala HOM05D000606 ORTHO05D002249 3.1e-10 68.2 47 70.2
CiPaw.03G222700 Carya illinoinensis HOM05D000606 ORTHO05D002249 4.1e-10 67.8 50 68.0
AUR62010876 Chenopodium quinoa HOM05D000606 ORTHO05D002249 4.1e-10 67.8 53 60.4
AUR62021389 Chenopodium quinoa HOM05D000606 ORTHO05D002249 4.1e-10 67.8 53 60.4
MD15G1199300 Malus domestica HOM05D000606 ORTHO05D002249 4.1e-10 67.8 44 70.5
Sc08g0008070 Simmondsia chinensis HOM05D000606 ORTHO05D002249 4.1e-10 67.8 53 60.4
Aa31LG3G12440 Aethionema arabicum HOM05D000606 ORTHO05D002249 5.3e-10 67.4 51 60.8
Aqoxy2G02423 Aquilegia oxysepala HOM05D000606 ORTHO05D002249 5.3e-10 67.4 53 62.3
Glyma.02G186300 Glycine max HOM05D000606 ORTHO05D002249 5.3e-10 67.4 45 71.1
Prupe.7G217900 Prunus persica HOM05D000606 ORTHO05D002249 5.3e-10 67.4 44 72.7
Hund09089 Selenicereus undatus HOM05D000606 ORTHO05D002249 5.3e-10 67.4 53 62.3
ATR0705G150 Amborella trichopoda HOM05D000606 ORTHO05D002249 9.1e-10 66.6 53 64.2
EL10Ac8g18365 Beta vulgaris HOM05D000606 ORTHO05D002249 9.1e-10 66.6 48 64.6
CANSAT56G1260 Cannabis sativa HOM05D000606 ORTHO05D002249 9.1e-10 66.6 49 65.3
CANSAT56G2185 Cannabis sativa HOM05D000606 ORTHO05D002249 9.1e-10 66.6 49 65.3
Medtr6g090470 Medicago truncatula HOM05D000606 ORTHO05D002249 9.1e-10 66.6 48 64.6
Ca_25587_v3 Cicer arietinum L. HOM05D000606 ORTHO05D002249 1.2e-09 66.2 45 68.9
MD02G1067500 Malus domestica HOM05D000606 ORTHO05D002249 1.6e-09 65.9 44 70.5
Phvul.004G174500 Phaseolus vulgaris HOM05D000606 ORTHO05D002249 1.6e-09 65.9 45 66.7
Psat1g050720 Pisum sativum HOM05D000606 ORTHO05D002249 1.6e-09 65.9 45 66.7
SHI02644 Sapria himalayana HOM05D000606 ORTHO05D002249 1.6e-09 65.9 66 56.1
TPR.G33489 Trifolium pratense HOM05D000606 ORTHO05D002249 1.6e-09 65.9 48 62.5
VMungo0464G2104 Vigna mungo HOM05D000606 ORTHO05D002249 1.6e-09 65.9 45 66.7
Zm00001eb154530 Zea mays HOM05D000606 ORTHO05D002249 1.6e-09 65.9 48 64.6
Lalb_Chr22g0352491 Lupinus albus HOM05D000606 ORTHO05D002249 2.0e-09 65.5 45 66.7
CARHR270270 Cardamine hirsuta HOM05D000606 ORTHO05D002249 2.7e-09 65.1 50 62.0
Glyma.10G107500 Glycine max HOM05D000606 ORTHO05D002249 2.7e-09 65.1 45 68.9
Sp6g18360 Schrenkiella parvula HOM05D000606 ORTHO05D002249 2.7e-09 65.1 50 60.0
BcaB01g04409 Brassica carinata HOM05D000606 ORTHO05D002249 3.5e-09 64.7 50 60.0
Thhalv10013956m.g Eutrema salsugineum HOM05D000606 ORTHO05D002249 3.5e-09 64.7 50 60.0
arahy.Tifrunner.gnm1.ann1.TEC1JY Arachis hypogaea HOM05D000606 ORTHO05D002249 4.5e-09 64.3 35 85.7
Ah.08g210790 Amaranthus hybridus HOM05D002028 ORTHO05D002249 5.9e-09 63.9 53 58.5
Os01g0510100 Oryza sativa ssp. japonica HOM05D000606 ORTHO05D002249 5.9e-09 63.9 48 60.4
THA.LOC104817739 Tarenaya hassleriana HOM05D000606 ORTHO05D002249 5.9e-09 63.9 50 60.0
AL8G32400 Arabidopsis lyrata HOM05D000606 ORTHO05D002249 1.0e-08 63.2 50 58.0
AT5G56580 Arabidopsis thaliana HOM05D000606 ORTHO05D002249 1.0e-08 63.2 50 58.0
BcaC01g06433 Brassica carinata HOM05D000606 ORTHO05D002249 1.0e-08 63.2 50 58.0
A03p13300 Brassica napus HOM05D000606 ORTHO05D002249 1.0e-08 63.2 50 58.0
C03p15570 Brassica napus HOM05D000606 ORTHO05D002249 1.0e-08 63.2 50 58.0
BraA03t10642Z Brassica rapa HOM05D000606 ORTHO05D002249 1.0e-08 63.2 50 58.0
Carub.0008s1706 Capsella rubella HOM05D000606 ORTHO05D002249 1.0e-08 63.2 50 58.0
HPP92_015673 Vanilla planifolia HOM05D000606 ORTHO05D002249 1.0e-08 63.2 53 52.8
BraA10t43486Z Brassica rapa HOM05D000606 ORTHO05D002249 2.2e-08 62.0 50 56.0
BcaC04g20071 Brassica carinata HOM05D000606 ORTHO05D002249 2.9e-08 61.6 54 55.6
C09p48190 Brassica napus HOM05D000606 ORTHO05D002249 2.9e-08 61.6 54 55.6
A10p13940 Brassica napus HOM05D000606 ORTHO05D002249 3.8e-08 61.2 50 56.0
SEGI_07335 Sequoiadendron giganteum HOM05D000606 ORTHO05D002249 3.8e-08 61.2 48 62.5
BolC3t13994H Brassica oleracea HOM05D000606 ORTHO05D002249 1.9e-07 58.9 43 65.1
ATR0051G020 Amborella trichopoda HOM05D000606 ORTHO05D002249 2.5e-07 58.5 48 58.3
AagrBONN_evm.TU.Sc2ySwM_344.1957 Anthoceros agrestis HOM05D000606 ORTHO05D002249 2.5e-07 58.5 45 60.0
CDE09G0793 Ceratophyllum demersum HOM05D000606 ORTHO05D002249 4.2e-07 57.8 42 66.7
Manes.10G112500 Manihot esculenta HOM05D000606 ORTHO05D002249 5.5e-07 57.4 46 58.7
Mapoly0015s0047 Marchantia polymorpha HOM05D000606 ORTHO05D002249 5.5e-07 57.4 43 62.8
Ciclev10008579m.g Citrus clementina HOM05D000606 ORTHO05D002249 7.2e-07 57.0 42 59.5
Os06g0147800 Oryza sativa ssp. japonica HOM05D000606 ORTHO05D002249 7.2e-07 57.0 44 59.1
SGA_v2.0_scaffold192G40635 Striga asiatica HOM05D000606 ORTHO05D002249 7.2e-07 57.0 41 63.4
TAR626G1448 Trochodendron aralioides HOM05D000606 ORTHO05D002249 7.2e-07 57.0 49 55.1
MBI05_g12575_MAGBIO Magnolia biondii HOM05D000606 ORTHO05D002249 9.4e-07 56.6 42 64.3
THA.LOC104811725 Tarenaya hassleriana HOM05D000606 ORTHO05D002249 9.4e-07 56.6 53 50.9
Cfa003048 Carpinus fangiana HOM05D000606 ORTHO05D002249 1.2e-06 56.2 56 50.0
CiPaw.04G147300 Carya illinoinensis HOM05D000606 ORTHO05D002249 1.2e-06 56.2 56 50.0
Gohir.D07G009500 Gossypium hirsutum HOM05D000606 ORTHO05D002249 1.2e-06 56.2 52 51.9
Gorai.001G009700 Gossypium raimondii HOM05D000606 ORTHO05D002249 1.2e-06 56.2 52 51.9
THA.LOC104814636 Tarenaya hassleriana HOM05D000606 ORTHO05D002249 1.2e-06 56.2 46 60.9
TAR413G0007 Trochodendron aralioides HOM05D000606 ORTHO05D002249 1.6e-06 55.8 49 53.1
Glyma.15G172600 Glycine max HOM05D000606 ORTHO05D002249 2.1e-06 55.5 46 54.3
Pp3c16_11030 Physcomitrium patens HOM05D000606 ORTHO05D002249 2.1e-06 55.5 45 51.1
QL02p061836 Quercus lobata HOM05D000606 ORTHO05D002249 2.1e-06 55.5 42 61.9
Eucgr.C00849 Eucalyptus grandis HOM05D000606 ORTHO05D002249 2.7e-06 55.1 42 59.5
PGR142G0336 Punica granatum HOM05D000606 ORTHO05D002249 2.7e-06 55.1 42 59.5
SMO329G0075 Selaginella moellendorffii HOM05D000606 ORTHO05D002249 2.7e-06 55.1 41 61.0
GSVIVG01015155001 Vitis vinifera HOM05D000606 ORTHO05D002249 2.7e-06 55.1 49 53.1
Atru.chr7.1645 Acer truncatum HOM05D000606 ORTHO05D002249 3.6e-06 54.7 41 56.1
arahy.Tifrunner.gnm1.ann1.9ITJ1M Arachis hypogaea HOM05D000606 ORTHO05D002249 3.6e-06 54.7 28 89.3
CDE11G0672 Ceratophyllum demersum HOM05D000606 ORTHO05D002249 3.6e-06 54.7 44 61.4
Haze_25949 Corylus avellana HOM05D000606 ORTHO05D002249 3.6e-06 54.7 56 48.2
Gohir.A07G009200 Gossypium hirsutum HOM05D000606 ORTHO05D002249 3.6e-06 54.7 52 51.9
Sc14g0000630 Simmondsia chinensis HOM05D000606 ORTHO05D002249 3.6e-06 54.7 67 46.3
arahy.Tifrunner.gnm1.ann1.84JEJ8 Arachis hypogaea HOM05D000606 ORTHO05D002249 4.7e-06 54.3 42 54.8
arahy.Tifrunner.gnm1.ann1.8S1XGC Arachis hypogaea HOM05D000606 ORTHO05D002249 4.7e-06 54.3 42 54.8
Cpa.g.sc371.4 Carica papaya HOM05D000606 ORTHO05D002249 4.7e-06 54.3 38 60.5
Duzib150G0785 Durio zibethinus HOM05D000606 ORTHO05D002249 4.7e-06 54.3 40 57.5
Gohir.D06G073000 Gossypium hirsutum HOM05D000606 ORTHO05D002249 4.7e-06 54.3 34 67.6
Gorai.010G085300 Gossypium raimondii HOM05D000606 ORTHO05D002249 4.7e-06 54.3 34 67.6
PSO210G5580 Papaver somniferum HOM05D000606 ORTHO05D002249 4.7e-06 54.3 41 56.1
PSO210G7333 Papaver somniferum HOM05D000606 ORTHO05D002249 4.7e-06 54.3 41 56.1
Pp3c10_22760 Physcomitrium patens HOM05D000606 ORTHO05D002249 4.7e-06 54.3 34 70.6
Thecc.09G083200 Theobroma cacao HOM05D000606 ORTHO05D002249 4.7e-06 54.3 40 57.5
COL.COLO4_18157 Corchorus olitorius HOM05D002154 ORTHO05D002249 6.1e-06 53.9 43 58.1
TWI34G1899 Tripterygium wilfordii HOM05D000606 ORTHO05D002249 6.1e-06 53.9 42 59.5
AL7G22440 Arabidopsis lyrata HOM05D000606 ORTHO05D002249 8.0e-06 53.5 46 56.5
AT4G29810 Arabidopsis thaliana HOM05D000606 ORTHO05D002249 8.0e-06 53.5 46 56.5
arahy.Tifrunner.gnm1.ann1.KNR1MN Arachis hypogaea HOM05D000606 ORTHO05D002249 8.0e-06 53.5 40 57.5
CARHR237710 Cardamine hirsuta HOM05D000606 ORTHO05D002249 8.0e-06 53.5 46 56.5
Gohir.D05G033400 Gossypium hirsutum HOM05D000606 ORTHO05D002249 8.0e-06 53.5 43 58.1
Manes.10G112700 Manihot esculenta HOM05D000606 ORTHO05D002249 8.0e-06 53.5 46 58.7
TAR624G0892 Trochodendron aralioides HOM05D002154 ORTHO05D002249 8.0e-06 53.5 49 51.0


User provided reference genes

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