Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 7.1e-116 420.6 213 100.0
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 7.3e-97 357.5 225 81.8
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 3.6e-96 355.1 223 83.0
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 6.2e-96 354.4 227 84.1
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 8.1e-96 354.0 227 80.6
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 1.4e-95 353.2 225 82.7
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 1.4e-95 353.2 226 80.1
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 4.0e-95 351.7 225 81.3
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 5.3e-95 351.3 223 81.6
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 9.0e-95 350.5 223 81.2
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.0e-94 349.4 223 81.2
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 2.0e-94 349.4 226 80.5
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 2.0e-94 349.4 225 80.4
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 2.6e-94 349.0 225 80.9
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 2.6e-94 349.0 225 80.9
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 3.4e-94 348.6 225 80.9
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 3.4e-94 348.6 225 78.7
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 3.4e-94 348.6 225 81.8
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 4.5e-94 348.2 226 80.5
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 4.5e-94 348.2 226 80.5
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 4.5e-94 348.2 222 81.5
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 4.5e-94 348.2 225 80.9
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 4.5e-94 348.2 223 81.6
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 5.8e-94 347.8 226 80.1
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 7.6e-94 347.4 224 80.8
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 7.6e-94 347.4 225 81.8
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 7.6e-94 347.4 227 80.2
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 9.9e-94 347.1 223 80.3
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 1.7e-93 346.3 225 79.6
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 2.2e-93 345.9 220 80.9
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 2.2e-93 345.9 220 80.5
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 2.2e-93 345.9 224 79.9
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 2.2e-93 345.9 226 80.1
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 2.9e-93 345.5 223 79.8
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.9e-93 345.5 223 79.8
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 3.8e-93 345.1 227 78.4
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 3.8e-93 345.1 227 78.4
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 3.8e-93 345.1 224 81.2
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 3.8e-93 345.1 223 80.3
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.1e-92 343.6 223 79.4
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 1.1e-92 343.6 227 79.7
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 1.9e-92 342.8 223 80.3
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 2.4e-92 342.4 225 80.0
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 2.4e-92 342.4 225 79.6
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 3.2e-92 342.0 223 78.5
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 3.2e-92 342.0 225 79.1
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 4.2e-92 341.7 223 80.7
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 5.4e-92 341.3 226 79.2
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 5.4e-92 341.3 222 79.3
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 7.1e-92 340.9 223 79.8
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 1.2e-91 340.1 226 76.5
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 1.2e-91 340.1 220 79.5
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 1.6e-91 339.7 223 78.5
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 1.6e-91 339.7 226 77.9
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 2.1e-91 339.3 226 78.3
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 2.1e-91 339.3 227 77.5
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 3.5e-91 338.6 225 78.2
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 3.5e-91 338.6 225 78.7
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 4.6e-91 338.2 227 78.4
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 1.0e-90 337.0 226 77.4
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 1.0e-90 337.0 226 77.4
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 1.0e-90 337.0 226 77.0
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 1.0e-90 337.0 226 77.4
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.0e-90 337.0 223 78.5
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 1.3e-90 336.7 226 76.5
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.3e-90 336.7 223 78.9
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.3e-90 336.7 225 78.7
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.3e-90 336.7 225 78.7
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 1.3e-90 336.7 222 78.8
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 1.8e-90 336.3 226 77.0
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.8e-90 336.3 227 76.7
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 2.3e-90 335.9 226 76.5
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 2.3e-90 335.9 226 76.5
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 2.3e-90 335.9 214 80.8
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 2.3e-90 335.9 225 79.1
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 2.3e-90 335.9 225 78.2
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 2.3e-90 335.9 227 76.2
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 2.3e-90 335.9 227 76.7
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 3.0e-90 335.5 225 76.9
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 3.9e-90 335.1 197 85.8
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 3.9e-90 335.1 227 76.7
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 5.1e-90 334.7 226 77.0
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 5.1e-90 334.7 225 77.8
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 5.1e-90 334.7 225 77.8
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 6.7e-90 334.3 226 76.5
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 6.7e-90 334.3 225 76.4
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 8.7e-90 334.0 226 76.1
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 8.7e-90 334.0 226 76.5
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.1e-89 333.6 226 77.9
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.1e-89 333.6 226 77.9
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.1e-89 333.6 227 76.2
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.5e-89 333.2 226 76.5
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 1.9e-89 332.8 226 76.5
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 1.9e-89 332.8 220 76.4
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 3.3e-89 332.0 223 78.0
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 3.3e-89 332.0 224 77.7
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 3.3e-89 332.0 221 76.9
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 4.3e-89 331.6 226 76.1
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 4.3e-89 331.6 226 75.7
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 4.3e-89 331.6 236 73.7
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.6e-89 331.3 226 76.5
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 5.6e-89 331.3 220 77.3
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 7.4e-89 330.9 220 75.9
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 1.3e-88 330.1 224 76.8
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 1.3e-88 330.1 226 77.0
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.6e-88 329.7 226 77.9
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 1.6e-88 329.7 227 75.8
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 2.8e-88 328.9 198 83.8
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 3.7e-88 328.6 197 83.2
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 4.8e-88 328.2 220 75.9
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 1.4e-87 326.6 210 78.6
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 3.1e-87 325.5 220 77.3
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 4.0e-87 325.1 220 75.5
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 2.6e-86 322.4 220 74.1
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 2.2e-85 319.3 222 74.3
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 3.8e-85 318.5 223 75.8
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 3.8e-85 318.5 223 75.8
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 1.9e-84 316.2 215 75.3
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 1.2e-83 313.5 222 74.8
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 1.6e-83 313.2 226 73.5
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 5.1e-82 308.1 164 90.2
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 3.3e-81 305.4 201 77.6
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 2.8e-80 302.4 219 72.6
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 2.0e-78 296.2 181 80.1
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 2.0e-78 296.2 163 86.5
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 3.2e-76 288.9 202 71.3
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 4.2e-76 288.5 198 76.8
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 6.3e-72 274.6 164 82.9
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.1e-71 272.3 162 80.2
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 5.3e-71 271.6 182 74.7
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.5e-70 270.0 162 79.6
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 6.5e-69 264.6 171 74.9
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 5.3e-63 245.0 225 64.4
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 5.1e-58 228.4 217 57.1
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 5.3e-55 218.4 225 56.4
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 2.1e-51 206.5 226 55.3
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 5.3e-47 191.8 204 52.5
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 7.7e-46 188.0 210 49.5
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 1.3e-45 187.2 127 73.2
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.2e-43 180.6 150 57.3
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.0e-41 173.3 148 71.6
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 1.8e-23 113.6 111 62.2
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.2e-15 86.3 58 74.1
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 3.2e-15 86.3 58 74.1
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 3.2e-07 59.7 54 57.4


User provided reference genes

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