Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044381 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 4.2e-62 241.1 116 100.0
CSS0004352 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 4.1e-33 144.8 82 85.4
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 4.1e-33 144.8 82 85.4
Hma1.2p1_0340F.1_g129760 Hydrangea macrophylla HOM05D000173 ORTHO05D004400 1.0e-28 130.2 76 80.3
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 3.3e-27 125.2 82 73.2
vmacro22486 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 3.3e-27 125.2 82 73.2
TAR365G0790 Trochodendron aralioides HOM05D000173 ORTHO05D004400 9.7e-27 123.6 82 74.4
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 3.7e-26 121.7 82 74.4
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 1.8e-25 119.4 82 73.2
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 1.8e-25 119.4 82 68.3
GSVIVG01008255001 Vitis vinifera HOM05D000173 ORTHO05D004400 2.4e-25 119.0 81 76.5
ClCG06G014940 Citrullus lanatus HOM05D000173 ORTHO05D004400 7.7e-24 114.0 82 69.5
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 7.7e-24 114.0 82 70.7
CsaV3_1G003700 Cucumis sativus L. HOM05D000173 ORTHO05D004400 1.7e-23 112.8 82 69.5
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 2.9e-23 112.1 82 67.1
CiPaw.16G084900 Carya illinoinensis HOM05D000173 ORTHO05D004400 2.9e-23 112.1 82 73.2
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 3.8e-23 111.7 82 68.3
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 5.0e-23 111.3 82 68.3
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 5.0e-23 111.3 93 62.4
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 6.5e-23 110.9 82 65.9
Sc04g0003650 Simmondsia chinensis HOM05D000173 ORTHO05D004400 6.5e-23 110.9 82 64.6
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 8.5e-23 110.5 82 69.5
Ciclev10020836m.g Citrus clementina HOM05D000173 ORTHO05D004400 2.5e-22 109.0 82 68.3
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 2.5e-22 109.0 83 67.5
Ah.09g233670 Amaranthus hybridus HOM05D000173 ORTHO05D004400 4.2e-22 108.2 82 65.9
Aqoxy2G03970 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 5.5e-22 107.8 82 65.9
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 7.2e-22 107.5 82 61.0
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 2.7e-21 105.5 82 67.1
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 4.7e-21 104.8 82 69.5
Medtr8g464900 Medicago truncatula HOM05D000173 ORTHO05D004400 4.7e-21 104.8 82 64.6
Psat4g222600 Pisum sativum HOM05D000173 ORTHO05D004400 8.0e-21 104.0 83 65.1
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 1.0e-20 103.6 82 64.6
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 1.0e-20 103.6 82 64.6
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 1.4e-20 103.2 82 64.6
ATR0064G093 Amborella trichopoda HOM05D000173 ORTHO05D004400 1.8e-20 102.8 80 62.5
ATR0737G114 Amborella trichopoda HOM05D000173 ORTHO05D004400 1.8e-20 102.8 80 63.8
Medtr5g066400 Medicago truncatula HOM05D000173 ORTHO05D004400 1.8e-20 102.8 83 62.7
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 1.8e-20 102.8 83 62.7
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 4.0e-20 101.7 82 64.6
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 4.0e-20 101.7 83 62.7
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 5.2e-20 101.3 82 58.5
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 5.2e-20 101.3 82 69.5
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 5.2e-20 101.3 83 62.7
Cc04_g07400 Coffea canephora HOM05D000173 ORTHO05D004400 6.8e-20 100.9 82 63.4
Nitab4.5_0000208g0190 Nicotiana tabacum HOM05D000173 ORTHO05D004400 6.8e-20 100.9 82 65.9
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 6.8e-20 100.9 82 61.0
MBI12_g44816_MAGBIO Magnolia biondii HOM05D000173 ORTHO05D004400 8.8e-20 100.5 72 66.7
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 1.2e-19 100.1 82 62.2
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 3.4e-19 98.6 82 61.0
PSO063G4537 Papaver somniferum HOM05D000173 ORTHO05D004400 3.4e-19 98.6 82 59.8
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 4.4e-19 98.2 82 61.0
Potri.012G061300 Populus trichocarpa HOM05D000173 ORTHO05D004400 4.4e-19 98.2 82 65.9
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 5.7e-19 97.8 82 62.2
Aqoxy5G04178 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 7.5e-19 97.4 82 59.8
DCAR_011346 Daucus carota HOM05D000173 ORTHO05D004400 7.5e-19 97.4 82 61.0
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 7.5e-19 97.4 82 63.4
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 9.7e-19 97.1 82 59.8
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 9.7e-19 97.1 78 61.5
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 1.3e-18 96.7 78 60.3
PSO017G6263 Papaver somniferum HOM05D000173 ORTHO05D004400 1.3e-18 96.7 82 59.8
TWI15G1235 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 1.3e-18 96.7 82 61.0
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 2.8e-18 95.5 82 61.0
Lalb_Chr05g0222631 Lupinus albus HOM05D000173 ORTHO05D004400 3.7e-18 95.1 82 54.9
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 3.7e-18 95.1 76 61.8
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 4.8e-18 94.7 82 59.8
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 8.3e-18 94.0 78 60.3
SHI30369 Sapria himalayana HOM05D000105 ORTHO05D004400 8.3e-18 94.0 82 56.1
Migut.D01593 Erythranthe guttata HOM05D000173 ORTHO05D004400 1.8e-17 92.8 82 57.3
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 2.4e-17 92.4 82 59.8
CANSAT35G1697 Cannabis sativa HOM05D000173 ORTHO05D004400 4.1e-17 91.7 82 59.8
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 4.1e-17 91.7 73 58.9
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 4.1e-17 91.7 82 59.8
MSTRG.4553 Avicennia marina HOM05D000173 ORTHO05D004400 7.0e-17 90.9 82 57.3
MSTRG.9268 Avicennia marina HOM05D000173 ORTHO05D004400 1.2e-16 90.1 82 57.3
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 1.2e-16 90.1 59 69.5
FAN25G2209 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.2e-16 90.1 82 59.8
Thecc.09G221900 Theobroma cacao HOM05D000173 ORTHO05D004400 1.2e-16 90.1 53 79.2
Aa31LG7G3120 Aethionema arabicum HOM05D000173 ORTHO05D004400 1.6e-16 89.7 82 57.3
Duzib168G1916 Durio zibethinus HOM05D000173 ORTHO05D004400 1.6e-16 89.7 53 79.2
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 1.6e-16 89.7 82 54.9
arahy.Tifrunner.gnm1.ann1.DFGQ2J Arachis hypogaea HOM05D000173 ORTHO05D004400 2.0e-16 89.4 82 51.2
arahy.Tifrunner.gnm1.ann1.NI3B5C Arachis hypogaea HOM05D000173 ORTHO05D004400 2.0e-16 89.4 82 51.2
HPP92_025882 Vanilla planifolia HOM05D000173 ORTHO05D004400 2.0e-16 89.4 73 58.9
Duzib150G1369 Durio zibethinus HOM05D000173 ORTHO05D004400 2.7e-16 89.0 53 79.2
FvH4_3g17390 Fragaria vesca HOM05D000173 ORTHO05D004400 4.5e-16 88.2 83 60.2
FAN16G2607 Fragaria x ananassa HOM05D000173 ORTHO05D004400 4.5e-16 88.2 83 60.2
FAN21G3174 Fragaria x ananassa HOM05D000173 ORTHO05D004400 4.5e-16 88.2 83 60.2
unitig_736.g22474 Utricularia gibba HOM05D000173 ORTHO05D004400 4.5e-16 88.2 82 58.5
Thhalv10018569m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 5.9e-16 87.8 82 54.9
FAN11G2015 Fragaria x ananassa HOM05D000173 ORTHO05D004400 5.9e-16 87.8 77 63.6
Gohir.A13G215300 Gossypium hirsutum HOM05D000173 ORTHO05D004400 7.7e-16 87.4 82 57.3
Gorai.013G249800 Gossypium raimondii HOM05D000173 ORTHO05D004400 7.7e-16 87.4 82 57.3
Lsat_1_v5_gn_8_109740 Lactuca sativa HOM05D000173 ORTHO05D004400 7.7e-16 87.4 82 56.1
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 7.7e-16 87.4 83 57.8
Zm00001eb000800 Zea mays HOM05D000173 ORTHO05D004400 1.0e-15 87.0 81 55.6
Haze_04561 Corylus avellana HOM05D000173 ORTHO05D004400 1.3e-15 86.7 61 72.1
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 2.2e-15 85.9 83 57.8
Sp5g29110 Schrenkiella parvula HOM05D000173 ORTHO05D004400 3.8e-15 85.1 82 52.4
BcaC05g25737 Brassica carinata HOM05D000173 ORTHO05D004400 5.0e-15 84.7 82 54.9
A06p14500 Brassica napus HOM05D000173 ORTHO05D004400 5.0e-15 84.7 82 54.9
C05p16720 Brassica napus HOM05D000173 ORTHO05D004400 5.0e-15 84.7 82 54.9
BolC5t30372H Brassica oleracea HOM05D000173 ORTHO05D004400 5.0e-15 84.7 82 54.9
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 5.0e-15 84.7 78 57.7
Gohir.D13G219000 Gossypium hirsutum HOM05D000173 ORTHO05D004400 6.5e-15 84.3 82 56.1
SalBow5G1565 Salvia bowleyana HOM05D000173 ORTHO05D004400 6.5e-15 84.3 71 62.0
VMungo0251G1487 Vigna mungo HOM05D000173 ORTHO05D004400 6.5e-15 84.3 82 47.6
Ca_23131_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 8.5e-15 84.0 82 52.4
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 1.1e-14 83.6 56 67.9
Os08g0137200 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D004400 1.9e-14 82.8 78 52.6
BcaNung05445 Brassica carinata HOM05D000173 ORTHO05D004400 3.2e-14 82.0 49 71.4
BraA08t34974Z Brassica rapa HOM05D000173 ORTHO05D004400 3.2e-14 82.0 49 71.4
Glyma.15G260400 Glycine max HOM05D000173 ORTHO05D004400 3.2e-14 82.0 56 66.1
CARHR019060 Cardamine hirsuta HOM05D000173 ORTHO05D004400 4.2e-14 81.6 59 61.0
COL.COLO4_38438 Corchorus olitorius HOM05D000173 ORTHO05D004400 4.2e-14 81.6 88 52.3
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 4.2e-14 81.6 53 69.8
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 4.2e-14 81.6 56 66.1
EL10Ac5g11421 Beta vulgaris HOM05D000173 ORTHO05D004400 5.5e-14 81.3 82 53.7
Carub.0002s2068 Capsella rubella HOM05D000173 ORTHO05D004400 7.2e-14 80.9 76 52.6
BcaB03g12979 Brassica carinata HOM05D003541 ORTHO05D004095 9.4e-14 80.5 49 69.4
Carub.0001s1808 Capsella rubella HOM05D000173 ORTHO05D004400 9.4e-14 80.5 47 74.5
Thhalv10007641m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 9.4e-14 80.5 49 69.4
Sp1g16390 Schrenkiella parvula HOM05D000173 ORTHO05D004400 9.4e-14 80.5 49 69.4
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 1.2e-13 80.1 83 51.8
Glyma.05G232900 Glycine max HOM05D000173 ORTHO05D004400 1.2e-13 80.1 82 50.0
AT1G73910 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 1.6e-13 79.7 82 47.6
BcaB07g31853 Brassica carinata HOM05D000173 ORTHO05D004400 1.6e-13 79.7 49 69.4
BraA06t24575Z Brassica rapa HOM05D000173 ORTHO05D004400 1.6e-13 79.7 49 69.4
Sabra15G0075200 Salix brachista HOM05D000173 ORTHO05D004400 1.6e-13 79.7 56 66.1
A08p30410 Brassica napus HOM05D000173 ORTHO05D004400 2.1e-13 79.3 53 66.0
Carub.0001s1805 Capsella rubella HOM05D000173 ORTHO05D004400 2.1e-13 79.3 52 67.3
AL1G30880 Arabidopsis lyrata HOM05D000173 ORTHO05D004400 3.6e-13 78.6 47 70.2
AT1G18450 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 3.6e-13 78.6 47 70.2
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 6.1e-13 77.8 78 48.7
C08p18620 Brassica napus HOM05D000173 ORTHO05D004400 1.0e-12 77.0 49 67.3
BolC8t49489H Brassica oleracea HOM05D003541 ORTHO05D004095 1.0e-12 77.0 49 67.3
Duzib093G1840 Durio zibethinus HOM05D000173 ORTHO05D004400 1.0e-12 77.0 83 49.4
AUR62029850 Chenopodium quinoa HOM05D000173 ORTHO05D004400 3.0e-12 75.5 82 52.4
Duzib093G1728 Durio zibethinus HOM05D000173 ORTHO05D004400 1.2e-11 73.6 53 62.3
FvH4_6g50670 Fragaria vesca HOM05D000173 ORTHO05D004400 1.5e-11 73.2 72 55.6
FAN14G3847 Fragaria x ananassa HOM05D000173 ORTHO05D004400 7.5e-11 70.9 72 54.2
AUR62025879 Chenopodium quinoa HOM05D000173 ORTHO05D004400 9.8e-11 70.5 52 65.4
Pp3c9_24230 Physcomitrium patens HOM05D000173 ORTHO05D004400 1.3e-10 70.1 54 61.1
AagrBONN_evm.TU.Sc2ySwM_228.3208 Anthoceros agrestis HOM05D000173 ORTHO05D004400 1.1e-09 67.0 52 55.8
Pp3c15_24010 Physcomitrium patens HOM05D000173 ORTHO05D004400 1.8e-09 66.2 54 55.6
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 3.1e-09 65.5 51 52.9
SMO347G0056 Selaginella moellendorffii HOM05D000173 ORTHO05D004400 4.1e-09 65.1 51 58.8
BcaC07g37803 Brassica carinata HOM05D038468 ORTHO05D004400 5.9e-08 61.2 34 73.5
CBR_g46675 Chara braunii HOM05D000173 ORTHO05D004400 3.8e-07 58.5 81 40.7
CBR_g46712 Chara braunii HOM05D000173 ORTHO05D004400 3.8e-07 58.5 81 40.7
Dinv07362 Davidia involucrata HOM05D000173 ORTHO05D004400 1.9e-06 56.2 32 81.2
Ca_21763_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 5.5e-06 54.7 80 41.2


User provided reference genes

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