Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 1.7e-310 1068.5 549 100.0
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 9.2e-176 620.9 575 60.7
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 6.4e-169 598.2 552 61.2
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.0e-163 578.9 575 58.3
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.8e-147 526.9 559 55.5
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 3.8e-137 492.7 614 50.3
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 1.0e-134 484.6 552 52.9
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 4.5e-130 469.2 679 44.9
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 1.1e-128 464.5 615 48.8
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 5.7e-125 452.2 590 49.5
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 2.0e-122 443.7 574 50.2
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 1.4e-107 394.4 564 45.2
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.0e-102 378.3 560 46.4
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 4.4e-101 372.9 561 44.9
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 1.7e-100 370.9 559 44.2
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 2.2e-100 370.5 585 43.6
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 3.1e-99 366.7 570 44.4
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 3.1e-99 366.7 561 44.6
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 4.5e-98 362.8 555 42.3
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 5.0e-97 359.4 564 44.5
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 1.8e-91 340.9 543 45.7
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 3.1e-91 340.1 548 44.2
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 4.5e-90 336.3 573 40.5
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 7.7e-90 335.5 564 42.0
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 3.8e-89 333.2 550 42.9
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 4.2e-88 329.7 557 43.4
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 4.7e-87 326.2 460 48.0
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 3.0e-86 323.6 505 44.2
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 8.8e-86 322.0 541 42.0
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 2.2e-84 317.4 306 57.8
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 2.2e-84 317.4 653 38.3
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 7.0e-83 312.4 484 43.2
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 7.0e-83 312.4 571 41.0
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 1.2e-82 311.6 297 55.6
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 3.2e-80 303.5 604 37.3
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 5.5e-80 302.8 609 37.1
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 4.0e-78 296.6 484 43.2
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 3.7e-76 290.0 552 39.1
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 1.8e-75 287.7 305 55.1
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 1.3e-73 281.6 560 40.2
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 2.1e-71 274.2 335 49.6
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 2.1e-71 274.2 295 51.9
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 2.8e-71 273.9 429 43.4
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 8.0e-71 272.3 558 38.9
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 1.4e-70 271.6 552 37.1
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 2.3e-70 270.8 571 36.3
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.5e-69 268.1 571 37.3
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 1.5e-69 268.1 433 44.6
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 2.0e-69 267.7 433 44.6
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 2.6e-69 267.3 486 39.7
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 2.6e-69 267.3 493 40.8
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 7.5e-69 265.8 413 41.9
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 2.9e-68 263.8 433 44.3
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 4.9e-68 263.1 484 39.9
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 8.3e-68 262.3 500 39.6
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 1.1e-67 261.9 559 36.9
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 2.7e-66 257.3 260 56.9
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 2.7e-66 257.3 309 49.8
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 4.6e-66 256.5 260 56.9
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 4.6e-66 256.5 477 38.2
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 5.9e-66 256.1 267 57.3
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 5.9e-66 256.1 512 37.9
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 1.3e-65 255.0 209 66.0
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.3e-65 254.2 385 45.2
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 3.9e-65 253.4 552 37.1
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 1.2e-63 248.4 324 44.4
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 3.6e-63 246.9 569 35.7
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 3.6e-63 246.9 540 37.4
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 4.4e-61 240.0 554 35.7
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 1.7e-60 238.0 489 37.4
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 1.7e-60 238.0 209 60.8
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 2.9e-60 237.3 419 39.1
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 2.0e-58 231.1 175 66.3
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 9.5e-56 222.2 367 44.4
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.2e-55 221.9 410 42.0
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 4.7e-55 219.9 282 48.9
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 8.9e-54 215.7 334 43.7
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 5.8e-53 213.0 445 37.1
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 2.2e-52 211.1 424 38.2
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.9e-52 209.9 262 48.9
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 6.4e-52 209.5 262 48.9
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.4e-51 208.4 262 48.5
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 3.2e-51 207.2 262 48.5
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 5.4e-51 206.5 563 35.2
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 2.7e-50 204.1 373 42.1
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 6.0e-50 203.0 319 40.4
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 7.8e-50 202.6 208 53.4
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 1.2e-47 195.3 320 40.9
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.1e-47 194.5 547 34.7
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 2.8e-47 194.1 449 35.9
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 3.6e-47 193.7 277 42.6
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 3.6e-47 193.7 277 42.6
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 3.6e-47 193.7 525 31.0
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 4.7e-47 193.4 277 42.6
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 4.0e-46 190.3 421 35.4
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.2e-45 188.7 184 58.2
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 1.2e-45 188.7 277 42.6
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 1.5e-45 188.3 277 41.9
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 1.5e-45 188.3 277 41.9
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 4.1e-43 180.3 312 41.7
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 9.2e-43 179.1 414 36.0
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 1.2e-42 178.7 324 40.7
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 4.6e-42 176.8 340 39.1
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 3.3e-40 170.6 417 34.5
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 1.2e-39 168.7 280 41.4
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.6e-39 168.3 216 47.2
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 8.9e-38 162.5 423 36.4
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 1.7e-36 158.3 176 52.8
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.9e-36 157.5 226 46.9
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 2.5e-32 144.4 192 44.8
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 5.6e-32 143.3 370 34.1
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 2.4e-30 137.9 177 48.6
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 4.0e-30 137.1 503 28.6
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 9.9e-29 132.5 125 58.4
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 2.9e-28 131.0 216 42.1
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 2.4e-27 127.9 201 43.3
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 8.7e-25 119.4 203 38.9
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 1.5e-24 118.6 343 35.9
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 5.3e-22 110.2 183 41.5
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 1.3e-20 105.5 235 33.6
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 3.2e-19 100.9 119 49.6
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 1.0e-17 95.9 186 36.0
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 3.9e-17 94.0 115 46.1
Actinidia21472 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.3e-16 90.5 133 45.9
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 1.3e-15 89.0 102 49.0
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 4.8e-15 87.0 115 44.3
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 4.8e-15 87.0 59 72.9
Nitab4.5_0003698g0060 Nicotiana tabacum HOM05D005442 ORTHO05D006450 9.0e-14 82.8 340 29.1
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 3.4e-13 80.9 183 33.3
Atru.chr5.3383 Acer truncatum HOM05D005442 ORTHO05D006450 6.5e-12 76.6 134 43.3
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 8.4e-12 76.3 80 51.2
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 9.3e-11 72.8 212 29.7
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 9.3e-11 72.8 263 28.1
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 7.9e-10 69.7 235 30.2
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 6.7e-09 66.6 199 28.1
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 6.7e-09 66.6 136 32.4
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.1e-08 65.9 173 27.7
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.1e-08 65.9 173 27.7
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 1.1e-08 65.9 173 27.7
SEGI_20616 Sequoiadendron giganteum HOM05D042574 ORTHO05D384790 1.5e-08 65.5 102 38.2
SEGI_40313 Sequoiadendron giganteum HOM05D042574 ORTHO05D384823 1.5e-08 65.5 102 38.2
Lsat_1_v5_gn_1_105560 Lactuca sativa HOM05D003178 ORTHO05D003636 1.9e-08 65.1 59 54.2
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 1.9e-08 65.1 190 28.9
BcaC01g02968 Brassica carinata HOM05D005442 ORTHO05D006450 4.3e-08 63.9 124 35.5
Actinidia39162 Actinidia chinensis HOM05D000686 ORTHO05D000512 7.4e-08 63.2 105 44.8
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 1.3e-07 62.4 151 31.1
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 3.7e-07 60.8 45 64.4
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 4.8e-07 60.5 76 47.4
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 4.8e-07 60.5 138 30.4
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 6.3e-07 60.1 192 29.2
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 1.4e-06 58.9 177 27.1
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 3.1e-06 57.8 136 30.9
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 3.1e-06 57.8 164 28.0
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 3.1e-06 57.8 162 26.5
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 3.1e-06 57.8 190 25.3
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 4.1e-06 57.4 138 30.4
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 4.1e-06 57.4 112 32.1
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 4.1e-06 57.4 112 33.9
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 5.3e-06 57.0 138 30.4
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 5.3e-06 57.0 127 29.1
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 6.9e-06 56.6 148 31.8
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 6.9e-06 56.6 167 28.1
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 9.0e-06 56.2 193 28.0
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 9.0e-06 56.2 227 24.2
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 9.0e-06 56.2 112 30.4
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 9.0e-06 56.2 156 26.3


User provided reference genes

Program Settings