Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044243 Camellia sinensis var. sinensis HOM05D017827 ORTHO05D112779 5.2e-145 517.7 262 100.0
CSS0011009 Camellia sinensis var. sinensis HOM05D017827 ORTHO05D109344 5.0e-95 351.7 262 75.2
CSS0012560 Camellia sinensis var. sinensis HOM05D017827 ORTHO05D110308 3.1e-89 332.4 300 66.3
CSS0045233 Camellia sinensis var. sinensis HOM05D017827 ORTHO05D111674 4.7e-85 318.5 300 61.0
CSS0025428 Camellia sinensis var. sinensis HOM05D017827 ORTHO05D113086 3.2e-78 295.8 302 56.6
CSS0006917 Camellia sinensis var. sinensis HOM05D017827 ORTHO05D109199 9.7e-75 284.3 274 61.7
CSS0023653 Camellia sinensis var. sinensis HOM05D017827 ORTHO05D109568 7.3e-22 108.6 101 67.3
CSS0007489 Camellia sinensis var. sinensis HOM05D000552 ORTHO05D000469 9.9e-11 71.6 99 45.5
Actinidia34389 Actinidia chinensis HOM05D000552 ORTHO05D000469 3.2e-09 66.6 99 43.4
Haze_10203 Corylus avellana HOM05D000552 ORTHO05D000469 3.5e-08 63.2 98 41.8
Dinv15776 Davidia involucrata HOM05D002228 ORTHO05D002347 3.5e-08 63.2 98 43.9
unitig_0.g102 Utricularia gibba HOM05D000552 ORTHO05D000469 4.6e-08 62.8 99 42.4
Rhsim11G0156200 Rhododendron simsii HOM05D000552 ORTHO05D000469 7.8e-08 62.0 99 41.4
Rhsim11G0157600 Rhododendron simsii HOM05D000552 ORTHO05D000469 7.8e-08 62.0 99 41.4
vmacro01989 Vaccinium macrocarpon HOM05D000552 ORTHO05D000469 1.0e-07 61.6 99 41.4
Thecc.02G111600 Theobroma cacao HOM05D000552 ORTHO05D000469 1.7e-07 60.8 99 41.4
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.3e-07 60.5 98 39.8
Zm00001eb134910 Zea mays HOM05D000552 ORTHO05D000469 2.3e-07 60.5 48 66.7
CDE01G0288 Ceratophyllum demersum HOM05D000552 ORTHO05D000469 3.0e-07 60.1 99 38.4
Lj5A215T67 Lonicera japonica HOM05D000552 ORTHO05D000469 3.0e-07 60.1 98 41.8
Ciclev10028641m.g Citrus clementina HOM05D000552 ORTHO05D000469 6.6e-07 58.9 43 72.1
CDE02G3411 Ceratophyllum demersum HOM05D000552 ORTHO05D000469 8.7e-07 58.5 99 38.4
ClCG02G006570 Citrullus lanatus HOM05D000552 ORTHO05D000469 8.7e-07 58.5 62 54.8
Nn5g30461 Nelumbo nucifera HOM05D000552 ORTHO05D000469 8.7e-07 58.5 44 72.7
Cc02_g19440 Coffea canephora HOM05D000552 ORTHO05D000469 1.1e-06 58.2 44 70.5
COL.COLO4_32569 Corchorus olitorius HOM05D000552 ORTHO05D000469 1.1e-06 58.2 44 68.2
Duzib132G0408 Durio zibethinus HOM05D000552 ORTHO05D000469 1.1e-06 58.2 44 70.5
Zm00001eb030090 Zea mays HOM05D000552 ORTHO05D000469 1.1e-06 58.2 48 64.6
Nn1g04654 Nelumbo nucifera HOM05D000552 ORTHO05D000469 1.9e-06 57.4 44 70.5
RcHm_v2.0_Chr6g0254421 Rosa chinensis HOM05D000552 ORTHO05D000469 1.9e-06 57.4 102 37.3
RcHm_v2.0_Chr6g0254451 Rosa chinensis HOM05D000552 ORTHO05D000469 1.9e-06 57.4 102 37.3
GSVIVG01037895001 Vitis vinifera HOM05D000552 ORTHO05D000469 1.9e-06 57.4 44 68.2
Aqoxy5G01128 Aquilegia oxysepala HOM05D000552 ORTHO05D000469 2.5e-06 57.0 51 64.7
Manes.10G075100 Manihot esculenta HOM05D000552 ORTHO05D000469 3.3e-06 56.6 98 39.8
Os03g0607600 Oryza sativa ssp. japonica HOM05D000552 ORTHO05D000469 3.3e-06 56.6 98 38.8
TAR628G0524 Trochodendron aralioides HOM05D000552 ORTHO05D000469 3.3e-06 56.6 44 65.9
Atru.chr5.2444 Acer truncatum HOM05D000552 ORTHO05D000469 4.3e-06 56.2 44 65.9
CAN.G221.1 Capsicum annuum HOM05D000552 ORTHO05D000469 4.3e-06 56.2 47 61.7
CDE10G0499 Ceratophyllum demersum HOM05D000552 ORTHO05D000469 4.3e-06 56.2 44 68.2
Cc10_g05280 Coffea canephora HOM05D000552 ORTHO05D000469 4.3e-06 56.2 99 38.4
QL11p032646 Quercus lobata HOM05D000552 ORTHO05D000469 4.3e-06 56.2 99 36.4
CARHR036790 Cardamine hirsuta HOM05D000552 ORTHO05D000469 5.6e-06 55.8 36 77.8
FvH4_2g04770 Fragaria vesca HOM05D000552 ORTHO05D000469 5.6e-06 55.8 48 58.3
FAN24G1426 Fragaria x ananassa HOM05D000552 ORTHO05D000469 5.6e-06 55.8 48 58.3
FAN27G3335 Fragaria x ananassa HOM05D000552 ORTHO05D000469 5.6e-06 55.8 48 58.3
HanXRQChr10g0288651 Helianthus annuus HOM05D000552 ORTHO05D000469 5.6e-06 55.8 44 68.2
MD05G1092000 Malus domestica HOM05D000552 ORTHO05D000469 5.6e-06 55.8 44 68.2
RcHm_v2.0_Chr6g0308961 Rosa chinensis HOM05D000552 ORTHO05D000469 5.6e-06 55.8 44 65.9
Solyc10g049360.2 Solanum lycopersicum HOM05D000552 ORTHO05D000469 5.6e-06 55.8 98 37.8
Sopen10g019800 Solanum pennellii HOM05D000552 ORTHO05D000469 5.6e-06 55.8 98 37.8
Actinidia08266 Actinidia chinensis HOM05D000552 ORTHO05D000469 7.3e-06 55.5 99 35.4
ATR0661G106 Amborella trichopoda HOM05D000552 ORTHO05D000469 7.3e-06 55.5 44 65.9
AL1G53370 Arabidopsis lyrata HOM05D000552 ORTHO05D000469 7.3e-06 55.5 36 75.0
Duzib093G0760 Durio zibethinus HOM05D000552 ORTHO05D000469 7.3e-06 55.5 44 68.2
FvH4_2g33530 Fragaria vesca HOM05D000552 ORTHO05D000469 7.3e-06 55.5 44 65.9
FAN20G2907 Fragaria x ananassa HOM05D000552 ORTHO05D000469 7.3e-06 55.5 44 65.9
FAN27G0469 Fragaria x ananassa HOM05D000552 ORTHO05D000469 7.3e-06 55.5 44 65.9
Nitab4.5_0002647g0010 Nicotiana tabacum HOM05D000552 ORTHO05D000469 7.3e-06 55.5 46 63.0
AT1G47230 Arabidopsis thaliana HOM05D000552 ORTHO05D000469 9.6e-06 55.1 36 72.2
MSTRG.22237 Avicennia marina HOM05D000552 ORTHO05D000469 9.6e-06 55.1 44 68.2
MSTRG.25060 Avicennia marina HOM05D000552 ORTHO05D000469 9.6e-06 55.1 44 68.2
CiPaw.16G035000 Carya illinoinensis HOM05D000552 ORTHO05D000469 9.6e-06 55.1 44 65.9
MELO3C018501.2 Cucumis melo HOM05D000552 ORTHO05D000469 9.6e-06 55.1 44 63.6
DCAR_029096 Daucus carota HOM05D000552 ORTHO05D000469 9.6e-06 55.1 44 63.6
Migut.C00518 Erythranthe guttata HOM05D000552 ORTHO05D000469 9.6e-06 55.1 99 38.4
Gohir.A12G021000 Gossypium hirsutum HOM05D000552 ORTHO05D000469 9.6e-06 55.1 44 65.9
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 9.6e-06 55.1 44 63.6
Pp3c2_9020 Physcomitrium patens HOM05D000552 ORTHO05D000469 9.6e-06 55.1 44 68.2
Potri.009G093100 Populus trichocarpa HOM05D000552 ORTHO05D000469 9.6e-06 55.1 44 68.2
Sabra09G0071700 Salix brachista HOM05D000552 ORTHO05D000469 9.6e-06 55.1 44 68.2
SalBow6G0892 Salvia bowleyana HOM05D000552 ORTHO05D000469 9.6e-06 55.1 44 65.9
SalBow6G1559 Salvia bowleyana HOM05D000552 ORTHO05D000469 9.6e-06 55.1 44 65.9
SalBow6G5673 Salvia bowleyana HOM05D000552 ORTHO05D000469 9.6e-06 55.1 44 65.9
PGSC0003DMG400022017 Solanum tuberosum HOM05D000552 ORTHO05D000469 9.6e-06 55.1 44 65.9


User provided reference genes

Program Settings