Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044228 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 5.4e-45 184.1 103 100.0
CSS0031692 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 3.9e-43 177.9 104 98.1
CSS0035942 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D008248 1.5e-42 176.0 103 89.3
CSS0020734 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 2.0e-39 165.6 103 92.2
Hma1.2p1_0112F.1_g054935 Hydrangea macrophylla HOM05D000032 ORTHO05D008248 8.9e-24 113.6 100 61.0
Rhsim09G0043500 Rhododendron simsii HOM05D000032 ORTHO05D008248 8.4e-22 107.1 75 72.0
Dinv29787 Davidia involucrata HOM05D000032 ORTHO05D008248 1.9e-21 105.9 79 69.6
vmacro00534 Vaccinium macrocarpon HOM05D000032 ORTHO05D008248 1.2e-20 103.2 92 60.9
Lj3C638G9 Lonicera japonica HOM05D000032 ORTHO05D008248 1.3e-19 99.8 80 66.2
CANSAT78G0248 Cannabis sativa HOM05D000032 ORTHO05D008248 1.4e-16 89.7 99 56.6
Cc03_g06800 Coffea canephora HOM05D000032 ORTHO05D008248 1.4e-16 89.7 100 52.0
Nitab4.5_0003474g0040 Nicotiana tabacum HOM05D000032 ORTHO05D008248 3.1e-16 88.6 102 52.0
Atru.chr4.1879 Acer truncatum HOM05D000032 ORTHO05D008248 5.3e-16 87.8 78 56.4
Sabra10G0043300 Salix brachista HOM05D000032 ORTHO05D008248 5.3e-16 87.8 76 65.8
Oeu023144.1 Olea europaea HOM05D000032 ORTHO05D008248 6.9e-16 87.4 105 52.4
Nitab4.5_0002937g0050 Nicotiana tabacum HOM05D000032 ORTHO05D008248 9.0e-16 87.0 102 51.0
Glyma.07G074800 Glycine max HOM05D000032 ORTHO05D008248 1.5e-15 86.3 76 56.6
TPR.G9295 Trifolium pratense HOM05D000032 ORTHO05D008248 2.6e-15 85.5 80 61.2
Potri.010G063600 Populus trichocarpa HOM05D000032 ORTHO05D008248 4.4e-15 84.7 80 60.0
TAR365G0107 Trochodendron aralioides HOM05D000032 ORTHO05D008248 4.4e-15 84.7 85 51.8
GSVIVG01027957001 Vitis vinifera HOM05D000032 ORTHO05D008248 4.4e-15 84.7 76 60.5
Medtr7g057250 Medicago truncatula HOM05D000032 ORTHO05D008248 9.9e-15 83.6 82 54.9
Actinidia32966 Actinidia chinensis HOM05D000032 ORTHO05D008248 2.9e-14 82.0 51 76.5
Ca_03626_v3 Cicer arietinum L. HOM05D000032 ORTHO05D008248 2.9e-14 82.0 79 55.7
Phvul.010G094600 Phaseolus vulgaris HOM05D000032 ORTHO05D008248 2.9e-14 82.0 81 54.3
TWI73G0114 Tripterygium wilfordii HOM05D000032 ORTHO05D008248 2.9e-14 82.0 104 47.1
Ciclev10004340m.g Citrus clementina HOM05D000032 ORTHO05D008248 3.8e-14 81.6 72 59.7
Duzib151G1189 Durio zibethinus HOM05D000032 ORTHO05D008248 6.4e-14 80.9 89 50.6
Lalb_Chr10g0097291 Lupinus albus HOM05D000032 ORTHO05D008248 8.4e-14 80.5 82 57.3
Lsat_1_v5_gn_2_42041 Lactuca sativa HOM05D000032 ORTHO05D008248 2.4e-13 79.0 84 56.0
VMungo0331G1285 Vigna mungo HOM05D000032 ORTHO05D008248 3.2e-13 78.6 77 54.5
MD12G1094500 Malus domestica HOM05D000032 ORTHO05D008248 4.2e-13 78.2 106 51.9
SGA_v2.0_scaffold86G26859 Striga asiatica HOM05D000032 ORTHO05D008248 5.4e-13 77.8 87 52.9
Cfa014812 Carpinus fangiana HOM05D000032 ORTHO05D008248 1.6e-12 76.3 98 46.9
Psat3g146960 Pisum sativum HOM05D000032 ORTHO05D008248 1.6e-12 76.3 84 50.0
Prupe.5G037600 Prunus persica HOM05D000032 ORTHO05D008248 1.6e-12 76.3 75 54.7
Manes.15G047300 Manihot esculenta HOM05D000032 ORTHO05D008248 2.1e-12 75.9 106 48.1
Sopen09g033680 Solanum pennellii HOM05D000032 ORTHO05D008248 2.1e-12 75.9 99 49.5
CiPaw.01G175600 Carya illinoinensis HOM05D000032 ORTHO05D008248 3.5e-12 75.1 73 54.8
Thecc.04G268600 Theobroma cacao HOM05D000032 ORTHO05D008248 3.5e-12 75.1 89 49.4
Gohir.D09G231300 Gossypium hirsutum HOM05D000032 ORTHO05D008248 4.6e-12 74.7 66 59.1
Peaxi162Scf00125g01324 Petunia axillaris HOM05D000032 ORTHO05D008248 4.6e-12 74.7 107 44.9
ClCG06G007360 Citrullus lanatus HOM05D000032 ORTHO05D024695 6.0e-12 74.3 76 55.3
Haze_11492 Corylus avellana HOM05D000032 ORTHO05D008248 7.8e-12 73.9 91 51.6
DCAR_024298 Daucus carota HOM05D000032 ORTHO05D008248 7.8e-12 73.9 104 51.0
MD14G1084300 Malus domestica HOM05D000032 ORTHO05D008248 7.8e-12 73.9 89 47.2
CAN.G812.30 Capsicum annuum HOM05D000032 ORTHO05D008248 1.0e-11 73.6 97 45.4
Cpa.g.sc59.33 Carica papaya HOM05D000032 ORTHO05D024695 1.0e-11 73.6 104 48.1
Migut.G00589 Erythranthe guttata HOM05D000032 ORTHO05D008248 1.0e-11 73.6 84 51.2
Gorai.006G254000 Gossypium raimondii HOM05D000032 ORTHO05D008248 1.0e-11 73.6 84 48.8
Gohir.A09G230200 Gossypium hirsutum HOM05D000032 ORTHO05D008248 1.3e-11 73.2 67 58.2
Ah.04g153530 Amaranthus hybridus HOM05D000032 ORTHO05D008248 1.7e-11 72.8 59 62.7
COL.COLO4_15998 Corchorus olitorius HOM05D000032 ORTHO05D008248 2.3e-11 72.4 89 49.4
ECA232G3455 Erigeron canadensis HOM05D000032 ORTHO05D008248 2.3e-11 72.4 68 57.4
Nn1g03022 Nelumbo nucifera HOM05D000032 ORTHO05D008248 2.3e-11 72.4 77 54.5
SalBow2G1692 Salvia bowleyana HOM05D000032 ORTHO05D008248 3.0e-11 72.0 109 45.0
arahy.Tifrunner.gnm1.ann1.W310LH Arachis hypogaea HOM05D000032 ORTHO05D008248 8.7e-11 70.5 72 52.8
MELO3C023052.2 Cucumis melo HOM05D000032 ORTHO05D008248 8.7e-11 70.5 76 52.6
Solyc09g090740.4 Solanum lycopersicum HOM05D000032 ORTHO05D008248 8.7e-11 70.5 95 46.3
PGSC0003DMG400001506 Solanum tuberosum HOM05D000032 ORTHO05D008248 8.7e-11 70.5 95 46.3
ECA232G1204 Erigeron canadensis HOM05D000032 ORTHO05D008248 1.1e-10 70.1 76 51.3
Lj3g0023133 Lotus japonicus HOM05D000032 ORTHO05D008248 1.1e-10 70.1 98 40.8
Sed0024548 Sechium edule HOM05D000032 ORTHO05D008248 1.9e-10 69.3 103 45.6
EL10Ac3g06715 Beta vulgaris HOM05D000032 ORTHO05D008248 3.3e-10 68.6 59 59.3
CsaV3_2G012320 Cucumis sativus L. HOM05D000032 ORTHO05D008248 3.3e-10 68.6 74 50.0
Eucgr.H02888 Eucalyptus grandis HOM05D000032 ORTHO05D008248 5.6e-10 67.8 104 45.2
PGR142G3130 Punica granatum HOM05D000032 ORTHO05D008248 7.3e-10 67.4 78 57.7
arahy.Tifrunner.gnm1.ann1.15AJKM Arachis hypogaea HOM05D000032 ORTHO05D008248 9.6e-10 67.0 71 50.7
FAN28G1398 Fragaria x ananassa HOM05D000032 ORTHO05D008248 9.6e-10 67.0 95 45.3
FAN23G0160 Fragaria x ananassa HOM05D000032 ORTHO05D008248 1.6e-09 66.2 95 44.2
THA.LOC104802593 Tarenaya hassleriana HOM05D000032 ORTHO05D008248 2.8e-09 65.5 79 48.1
Sc13g0003050 Simmondsia chinensis HOM05D000032 ORTHO05D008248 3.6e-09 65.1 66 62.1
PSO339G1682 Papaver somniferum HOM05D000032 ORTHO05D008248 4.8e-09 64.7 84 44.0
RcHm_v2.0_Chr3g0492441 Rosa chinensis HOM05D000032 ORTHO05D008248 4.8e-09 64.7 105 46.7
Hund20473 Selenicereus undatus HOM05D000032 ORTHO05D008248 1.8e-08 62.8 90 43.3
AT3G16840 Arabidopsis thaliana HOM05D000032 ORTHO05D008248 4.0e-08 61.6 74 50.0
MBI10_g26047_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D008248 4.0e-08 61.6 64 57.8
CARHR092100 Cardamine hirsuta HOM05D000032 ORTHO05D008248 1.5e-07 59.7 75 50.7
Psat3g117880 Pisum sativum HOM05D000032 ORTHO05D008248 1.5e-07 59.7 43 65.1
AL3G29800 Arabidopsis lyrata HOM05D000032 ORTHO05D008248 2.0e-07 59.3 75 46.7
Carub.0003s1655 Capsella rubella HOM05D000032 ORTHO05D008248 2.6e-07 58.9 107 40.2
CARHR247950 Cardamine hirsuta HOM05D000032 ORTHO05D008248 4.5e-07 58.2 75 45.3
unitig_899.g14854 Utricularia gibba HOM05D000032 ORTHO05D008248 4.5e-07 58.2 102 43.1
Sp3g15080 Schrenkiella parvula HOM05D000032 ORTHO05D008248 5.8e-07 57.8 106 40.6
Aqoxy5G00104 Aquilegia oxysepala HOM05D000032 ORTHO05D008248 9.9e-07 57.0 66 48.5
BcaB04g20873 Brassica carinata HOM05D000032 ORTHO05D008248 1.7e-06 56.2 114 37.7
HanXRQChr14g0434201 Helianthus annuus HOM05D000032 ORTHO05D008248 2.2e-06 55.8 104 40.4
PSO063G0133 Papaver somniferum HOM05D000032 ORTHO05D008248 2.9e-06 55.5 84 40.5
FAN19G1189 Fragaria x ananassa HOM05D000032 ORTHO05D008248 3.8e-06 55.1 99 41.4


User provided reference genes

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