Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044031 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D014543 6.1e-119 431.0 247 100.0
CSS0012318 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D014543 2.3e-41 173.3 109 84.4
CSS0021846 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 8.7e-17 91.7 52 88.5
CSS0037304 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.5e-16 90.1 52 86.5
CSS0043966 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.5e-16 90.1 52 86.5
CSS0044124 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.5e-16 90.1 52 86.5
CSS0045961 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.5e-16 90.1 52 86.5
CSS0025783 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 4.3e-16 89.4 53 84.9
CSS0022838 Camellia sinensis var. sinensis HOM05D042287 ORTHO05D000106 3.7e-15 86.3 77 61.0
CDE12G0934 Ceratophyllum demersum HOM05D002653 ORTHO05D002623 3.5e-10 69.7 61 57.4
CSS0026519 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 1.1e-08 64.7 40 77.5
CSS0038262 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 1.1e-08 64.7 40 77.5
CSS0014845 Camellia sinensis var. sinensis HOM05D000014 ORTHO05D000016 3.3e-08 63.2 56 66.1
Atru.chr8.1040 Acer truncatum HOM05D002653 ORTHO05D002623 7.4e-08 62.0 40 67.5
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 9.7e-08 61.6 40 70.0
unitig_8.g3109 Utricularia gibba HOM05D002653 ORTHO05D002623 9.7e-08 61.6 36 69.4
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 1.3e-07 61.2 40 70.0
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 1.6e-07 60.8 40 67.5
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 1.6e-07 60.8 40 67.5
Nitab4.5_0004202g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 1.6e-07 60.8 32 81.2
Nitab4.5_0006025g0020 Nicotiana tabacum HOM05D002653 ORTHO05D002623 1.6e-07 60.8 32 81.2
Oeu013190.1 Olea europaea HOM05D002653 ORTHO05D002623 1.6e-07 60.8 40 67.5
Peaxi162Scf00126g00051 Petunia axillaris HOM05D002653 ORTHO05D002623 1.6e-07 60.8 32 81.2
Migut.L00787 Erythranthe guttata HOM05D002653 ORTHO05D002623 2.2e-07 60.5 40 67.5
Migut.L00841 Erythranthe guttata HOM05D002653 ORTHO05D002623 2.2e-07 60.5 40 67.5
Actinidia33497 Actinidia chinensis HOM05D000442 ORTHO05D009326 2.8e-07 60.1 43 74.4
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 3.7e-07 59.7 40 65.0
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 3.7e-07 59.7 32 81.2
Nitab4.5_0020732g0010 Nicotiana tabacum HOM05D002653 ORTHO05D002623 3.7e-07 59.7 32 78.1
Hund04713 Selenicereus undatus HOM05D002653 ORTHO05D002623 3.7e-07 59.7 40 67.5
Nitab4.5_0004950g0030 Nicotiana tabacum HOM05D002653 ORTHO05D002623 4.8e-07 59.3 32 78.1
Solyc11g045140.1 Solanum lycopersicum HOM05D002653 ORTHO05D002623 4.8e-07 59.3 32 78.1
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 4.8e-07 59.3 32 78.1
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 6.3e-07 58.9 40 65.0
Eucgr.K01358 Eucalyptus grandis HOM05D002653 ORTHO05D002623 8.2e-07 58.5 40 65.0
Sed0013773 Sechium edule HOM05D002653 ORTHO05D002623 1.1e-06 58.2 32 78.1
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 1.1e-06 58.2 40 65.0
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 1.4e-06 57.8 32 75.0
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 1.4e-06 57.8 32 75.0
Cc11_g00310 Coffea canephora HOM05D002653 ORTHO05D002623 1.4e-06 57.8 40 62.5
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 1.8e-06 57.4 40 62.5
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 1.8e-06 57.4 40 65.0
CiPaw.06G000200 Carya illinoinensis HOM05D002653 ORTHO05D002623 1.8e-06 57.4 40 65.0
Cc02_g24870 Coffea canephora HOM05D000442 ORTHO05D009326 1.8e-06 57.4 43 74.4
Hma1.2p1_1074F.1_g254380 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 1.8e-06 57.4 40 62.5
vmacro03484 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 1.8e-06 57.4 41 61.0
GSVIVG01019371001 Vitis vinifera HOM05D002653 ORTHO05D002623 1.8e-06 57.4 40 65.0
CANSAT21G1488 Cannabis sativa HOM05D000442 ORTHO05D009326 2.4e-06 57.0 43 72.1
ClCG03G010440 Citrullus lanatus HOM05D002653 ORTHO05D002623 2.4e-06 57.0 32 78.1
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 2.4e-06 57.0 40 62.5
FAN10G0134 Fragaria x ananassa HOM05D000442 ORTHO05D009326 2.4e-06 57.0 43 72.1
Ciclev10012577m.g Citrus clementina HOM05D002653 ORTHO05D002623 3.1e-06 56.6 40 65.0
Dinv44077 Davidia involucrata HOM05D000442 ORTHO05D009326 3.1e-06 56.6 29 93.1
FvH4_7g09750 Fragaria vesca HOM05D000442 ORTHO05D009326 3.1e-06 56.6 43 72.1
FAN06G3168 Fragaria x ananassa HOM05D000442 ORTHO05D009326 3.1e-06 56.6 43 72.1
FAN06G4385 Fragaria x ananassa HOM05D000442 ORTHO05D009326 3.1e-06 56.6 43 72.1
FAN10G3347 Fragaria x ananassa HOM05D000442 ORTHO05D009326 3.1e-06 56.6 43 72.1
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 3.1e-06 56.6 40 62.5
ECA240G1042 Erigeron canadensis HOM05D000442 ORTHO05D009326 4.1e-06 56.2 29 89.7
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 4.1e-06 56.2 40 60.0
HanXRQChr09g0241671 Helianthus annuus HOM05D000442 ORTHO05D009326 4.1e-06 56.2 29 89.7
Lsat_1_v5_gn_4_46721 Lactuca sativa HOM05D000442 ORTHO05D009326 4.1e-06 56.2 29 89.7
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 4.1e-06 56.2 40 62.5
RcHm_v2.0_Chr1g0346751 Rosa chinensis HOM05D000442 ORTHO05D009326 4.1e-06 56.2 43 69.8
Actinidia12654 Actinidia chinensis HOM05D000442 ORTHO05D009326 5.3e-06 55.8 43 72.1
vmacro13483 Vaccinium macrocarpon HOM05D000442 ORTHO05D009326 5.3e-06 55.8 29 89.7
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 6.9e-06 55.5 40 60.0
MELO3C010033.2 Cucumis melo HOM05D002653 ORTHO05D002623 6.9e-06 55.5 32 75.0
CsaV3_1G044350 Cucumis sativus L. HOM05D002653 ORTHO05D002623 6.9e-06 55.5 32 75.0
Manes.01G271900 Manihot esculenta HOM05D000442 ORTHO05D009326 6.9e-06 55.5 43 69.8
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 6.9e-06 55.5 40 60.0
Prupe.2G125700 Prunus persica HOM05D000442 ORTHO05D009326 6.9e-06 55.5 43 69.8
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 6.9e-06 55.5 40 60.0
TWI14G0054 Tripterygium wilfordii HOM05D000442 ORTHO05D009326 6.9e-06 55.5 43 69.8
TWI14G0777 Tripterygium wilfordii HOM05D000442 ORTHO05D009326 6.9e-06 55.5 43 69.8
CiPaw.14G021900 Carya illinoinensis HOM05D000442 ORTHO05D009326 9.0e-06 55.1 43 67.4
Solyc01g090480.4 Solanum lycopersicum HOM05D000442 ORTHO05D009326 9.0e-06 55.1 29 93.1
Sopen01g036270 Solanum pennellii HOM05D000442 ORTHO05D009326 9.0e-06 55.1 29 93.1
PGSC0003DMG400025983 Solanum tuberosum HOM05D000442 ORTHO05D009326 9.0e-06 55.1 29 93.1


User provided reference genes

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