Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.1e-47 193.0 96 100.0
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 6.8e-34 147.1 81 92.6
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.5e-33 146.0 82 92.7
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.5e-33 146.0 82 92.7
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.0e-33 145.6 81 93.8
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 8.3e-32 140.2 81 90.1
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.4e-31 139.4 81 87.7
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 5.4e-31 137.5 82 86.6
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 5.4e-31 137.5 81 87.7
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 1.2e-30 136.3 80 87.5
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.6e-30 136.0 81 86.4
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 2.7e-30 135.2 81 86.4
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 6.0e-30 134.0 81 85.2
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 1.3e-29 132.9 85 81.2
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.9e-29 131.3 82 82.9
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 5.0e-29 131.0 81 81.5
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.0e-29 131.0 81 84.0
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.0e-29 131.0 81 84.0
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 6.6e-29 130.6 81 84.0
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.5e-28 129.4 81 80.2
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.5e-28 129.4 81 81.5
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 1.9e-28 129.0 81 81.5
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.5e-28 128.6 81 81.5
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 4.3e-28 127.9 81 81.5
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 5.6e-28 127.5 89 76.4
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 7.3e-28 127.1 81 80.2
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 9.5e-28 126.7 82 79.3
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 9.5e-28 126.7 81 77.8
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 9.5e-28 126.7 78 80.8
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 1.2e-27 126.3 80 77.5
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 1.6e-27 125.9 82 79.3
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 2.1e-27 125.6 94 71.3
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 2.8e-27 125.2 81 79.0
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 2.8e-27 125.2 82 74.4
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 2.8e-27 125.2 79 81.0
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.8e-27 125.2 78 80.8
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 2.8e-27 125.2 81 80.2
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 2.8e-27 125.2 91 70.3
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 3.6e-27 124.8 78 80.8
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 3.6e-27 124.8 81 80.2
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 4.7e-27 124.4 81 79.0
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 4.7e-27 124.4 81 79.0
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.1e-26 123.2 81 80.2
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.1e-26 123.2 81 80.2
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.1e-26 123.2 81 79.0
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 1.1e-26 123.2 81 79.0
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.1e-26 123.2 81 80.2
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.4e-26 122.9 82 76.8
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 1.8e-26 122.5 81 75.3
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 1.8e-26 122.5 81 79.0
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 2.3e-26 122.1 81 79.0
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 2.3e-26 122.1 79 79.7
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 4.0e-26 121.3 82 78.0
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 4.0e-26 121.3 78 78.2
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 4.0e-26 121.3 80 77.5
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 4.0e-26 121.3 81 75.3
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 4.0e-26 121.3 79 78.5
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 5.2e-26 120.9 81 76.5
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 5.2e-26 120.9 81 76.5
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 5.2e-26 120.9 81 76.5
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 6.8e-26 120.6 81 79.0
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 6.8e-26 120.6 76 78.9
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 6.8e-26 120.6 80 78.8
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 8.9e-26 120.2 81 75.3
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 8.9e-26 120.2 81 79.0
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 8.9e-26 120.2 81 79.0
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 8.9e-26 120.2 81 77.8
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 2.0e-25 119.0 81 74.1
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 2.0e-25 119.0 77 76.6
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 2.0e-25 119.0 77 79.2
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 2.6e-25 118.6 81 76.5
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 2.6e-25 118.6 76 80.3
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 2.6e-25 118.6 79 77.2
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 3.4e-25 118.2 81 75.3
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 3.4e-25 118.2 79 79.7
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 3.4e-25 118.2 88 70.5
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 5.8e-25 117.5 93 72.0
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 5.8e-25 117.5 70 85.7
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 7.5e-25 117.1 82 74.4
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 9.8e-25 116.7 81 72.8
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 9.8e-25 116.7 78 78.2
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 1.7e-24 115.9 77 80.5
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 2.2e-24 115.5 81 72.8
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 2.2e-24 115.5 79 77.2
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 2.2e-24 115.5 79 77.2
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 2.9e-24 115.2 81 72.8
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 2.9e-24 115.2 81 72.8
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 2.9e-24 115.2 79 77.2
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 3.7e-24 114.8 75 77.3
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 3.7e-24 114.8 81 70.4
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 4.9e-24 114.4 75 78.7
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 4.9e-24 114.4 77 74.0
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 1.1e-23 113.2 87 70.1
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.1e-23 113.2 74 78.4
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 1.1e-23 113.2 81 71.6
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 1.4e-23 112.8 79 77.2
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 3.2e-23 111.7 74 77.0
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 5.4e-23 110.9 81 71.6
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 7.1e-23 110.5 77 77.9
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 9.2e-23 110.2 79 69.6
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 1.6e-22 109.4 81 71.6
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.6e-22 109.4 76 73.7
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 2.7e-22 108.6 76 71.1
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 2.7e-22 108.6 76 71.1
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.5e-22 108.2 77 70.1
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 6.0e-22 107.5 74 73.0
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 7.8e-22 107.1 76 68.4
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 7.8e-22 107.1 76 69.7
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 1.3e-21 106.3 74 73.0
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 1.3e-21 106.3 90 62.2
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.7e-21 105.9 76 68.4
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 2.3e-21 105.5 74 71.6
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 2.3e-21 105.5 74 71.6
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 3.0e-21 105.1 90 61.1
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 3.0e-21 105.1 90 61.1
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 3.0e-21 105.1 90 61.1
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 3.0e-21 105.1 89 61.8
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 5.1e-21 104.4 90 60.0
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 5.1e-21 104.4 90 60.0
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 5.1e-21 104.4 90 60.0
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 5.1e-21 104.4 90 60.0
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 6.6e-21 104.0 75 72.0
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 6.6e-21 104.0 74 70.3
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 6.6e-21 104.0 74 70.3
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 6.6e-21 104.0 74 70.3
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.5e-20 102.1 75 70.7
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 2.8e-19 98.6 78 62.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 6.2e-19 97.4 75 66.7
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 8.1e-19 97.1 72 68.1
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 8.1e-19 97.1 72 68.1
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 8.1e-19 97.1 72 68.1
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 1.7e-16 89.4 72 65.3
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 2.2e-16 89.0 79 59.5
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 6.4e-16 87.4 75 61.3
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 6.4e-16 87.4 73 61.6
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 5.4e-15 84.3 73 60.3
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 2.1e-14 82.4 49 85.7
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.9e-13 78.2 56 67.9
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.9e-13 78.2 56 67.9
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 4.3e-12 74.7 76 57.9
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 5.6e-12 74.3 41 87.8
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.2e-11 73.2 51 70.6
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 2.8e-11 72.0 51 66.7
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 8.9e-10 67.0 74 47.3
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 2.4e-07 58.9 39 74.4


User provided reference genes

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