Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043747 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 5.7e-166 587.4 276 100.0
CSS0039700 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 9.7e-158 560.1 279 96.1
CSS0001270 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 2.8e-157 558.5 279 95.7
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 9.7e-150 533.5 276 89.5
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 3.7e-149 531.6 276 88.4
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 2.4e-148 528.9 277 89.2
CSS0019318 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 2.0e-147 525.8 276 89.1
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 2.0e-147 525.8 277 88.1
Hma1.2p1_1378F.1_g279185 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 4.7e-144 514.6 276 86.6
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 2.2e-141 505.8 276 84.4
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 9.1e-140 500.4 276 84.4
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 1.2e-139 500.0 276 82.6
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 4.5e-139 498.0 276 82.6
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 1.3e-138 496.5 276 81.5
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 2.9e-138 495.4 276 81.2
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 1.5e-137 493.0 276 81.5
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 1.9e-137 492.7 276 80.4
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 5.5e-137 491.1 276 81.2
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 1.6e-136 489.6 276 81.9
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 8.0e-136 487.3 276 80.1
Solyc07g052940.4 Solanum lycopersicum HOM05D003463 ORTHO05D004206 8.0e-136 487.3 276 80.1
Sopen07g026490 Solanum pennellii HOM05D003463 ORTHO05D004206 8.0e-136 487.3 276 80.1
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 1.4e-135 486.5 276 82.2
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 1.4e-135 486.5 276 79.7
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 1.8e-135 486.1 276 79.7
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 2.3e-135 485.7 276 80.1
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 4.0e-135 485.0 276 81.5
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 6.7e-135 484.2 276 79.7
TAR627G0487 Trochodendron aralioides HOM05D003463 ORTHO05D004206 6.7e-135 484.2 276 79.3
Glyma.12G196800 Glycine max HOM05D003463 ORTHO05D004206 8.8e-135 483.8 276 79.7
Glyma.13G305000 Glycine max HOM05D003463 ORTHO05D004206 2.6e-134 482.3 276 79.7
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 2.2e-133 479.2 248 91.1
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 2.8e-133 478.8 276 80.8
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 2.8e-133 478.8 276 80.8
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 3.7e-133 478.4 276 80.8
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 4.8e-133 478.0 276 80.8
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 6.3e-133 477.6 276 77.5
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 6.3e-133 477.6 276 79.3
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 1.1e-132 476.9 276 77.5
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.4e-132 476.5 275 79.3
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 1.8e-132 476.1 317 71.6
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 2.4e-132 475.7 276 80.4
Eucgr.A01739 Eucalyptus grandis HOM05D003463 ORTHO05D004206 7.0e-132 474.2 276 77.9
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 7.0e-132 474.2 276 79.7
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 9.1e-132 473.8 276 78.6
Sed0025509 Sechium edule HOM05D003463 ORTHO05D004206 9.1e-132 473.8 276 78.6
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 1.6e-131 473.0 276 78.6
ClCG02G001610 Citrullus lanatus HOM05D003463 ORTHO05D004206 2.7e-131 472.2 276 79.0
Sed0018482 Sechium edule HOM05D003463 ORTHO05D004206 5.9e-131 471.1 276 78.6
MELO3C018791.2 Cucumis melo HOM05D003463 ORTHO05D004206 2.2e-130 469.2 276 77.9
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 2.9e-130 468.8 276 77.9
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 4.2e-129 464.9 276 75.7
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 4.2e-129 464.9 276 75.7
CsaV3_7G003880 Cucumis sativus L. HOM05D003463 ORTHO05D004206 1.2e-128 463.4 276 77.2
DCAR_021199 Daucus carota HOM05D003463 ORTHO05D004206 1.2e-128 463.4 276 76.4
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 2.1e-128 462.6 276 76.4
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 2.7e-128 462.2 276 75.7
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 3.6e-128 461.8 276 76.1
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 6.1e-128 461.1 276 76.1
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 8.0e-128 460.7 276 74.3
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 1.0e-127 460.3 274 76.3
Sc21g0001820 Simmondsia chinensis HOM05D003463 ORTHO05D004206 1.0e-127 460.3 276 77.2
TWI36G1584 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 1.0e-127 460.3 276 76.8
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 3.0e-127 458.8 276 77.2
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 4.0e-127 458.4 276 75.0
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 4.0e-127 458.4 276 75.0
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 6.8e-127 457.6 276 75.4
Lj3g0021154 Lotus japonicus HOM05D003463 ORTHO05D004206 6.8e-127 457.6 276 75.7
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 1.5e-126 456.4 269 76.2
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 2.0e-126 456.1 276 76.1
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 2.0e-126 456.1 272 75.7
Hund08062 Selenicereus undatus HOM05D003463 ORTHO05D004206 2.6e-126 455.7 276 78.6
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 3.4e-126 455.3 276 76.4
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 4.4e-126 454.9 270 77.4
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 7.5e-126 454.1 276 74.3
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 7.5e-126 454.1 276 74.3
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 9.8e-126 453.8 276 74.3
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 2.2e-125 452.6 275 73.8
SGA_v2.0_scaffold34G13880 Striga asiatica HOM05D003463 ORTHO05D004206 3.7e-125 451.8 276 74.3
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 4.8e-125 451.4 273 74.0
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 8.3e-125 450.7 276 74.6
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.1e-124 450.3 276 73.9
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 2.4e-124 449.1 276 74.3
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 5.4e-124 448.0 276 73.6
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 9.1e-124 447.2 276 73.6
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 1.6e-123 446.4 268 75.0
DCAR_009696 Daucus carota HOM05D003463 ORTHO05D004206 2.0e-123 446.0 282 74.1
Ah.01g005040 Amaranthus hybridus HOM05D003463 ORTHO05D004206 1.3e-122 443.4 276 74.6
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 5.0e-122 441.4 276 73.2
EL10Ac9g22340 Beta vulgaris HOM05D003463 ORTHO05D004206 1.5e-121 439.9 277 75.5
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 3.3e-121 438.7 276 73.6
CARHR221910 Cardamine hirsuta HOM05D003463 ORTHO05D004206 1.4e-119 433.3 274 69.7
Thhalv10024183m.g Eutrema salsugineum HOM05D003463 ORTHO05D004206 1.4e-119 433.3 274 69.7
AL7G40500 Arabidopsis lyrata HOM05D003463 ORTHO05D004206 2.3e-119 432.6 274 69.0
Aa31LG8G8660 Aethionema arabicum HOM05D003463 ORTHO05D004206 8.9e-119 430.6 274 68.6
AT4G15180 Arabidopsis thaliana HOM05D003463 ORTHO05D004206 2.2e-117 426.0 275 68.7
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 2.2e-117 426.0 276 68.8
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 3.7e-117 425.2 276 73.2
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 8.3e-117 424.1 276 68.5
Sp7g13400 Schrenkiella parvula HOM05D003463 ORTHO05D004206 3.1e-116 422.2 274 68.6
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 1.2e-115 420.2 276 67.4
ATR0804G005 Amborella trichopoda HOM05D003463 ORTHO05D004206 5.9e-115 417.9 276 68.1
Os08g0180100 Oryza sativa ssp. japonica HOM05D003463 ORTHO05D004206 5.9e-115 417.9 269 69.5
BcaB02g07835 Brassica carinata HOM05D003463 ORTHO05D004206 1.3e-114 416.8 274 66.4
A01p22340 Brassica napus HOM05D003463 ORTHO05D004206 1.3e-114 416.8 274 66.4
BraA01t02149Z Brassica rapa HOM05D003463 ORTHO05D004206 1.3e-114 416.8 274 66.4
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 2.3e-114 416.0 277 67.1
BcaC08g44245 Brassica carinata HOM05D003463 ORTHO05D004206 3.8e-114 415.2 274 66.4
C06p16490 Brassica napus HOM05D003463 ORTHO05D004206 8.6e-114 414.1 274 66.1
BolC6t36852H Brassica oleracea HOM05D003463 ORTHO05D004206 8.6e-114 414.1 274 66.1
BcaC09g50202 Brassica carinata HOM05D003463 ORTHO05D004206 1.5e-113 413.3 274 65.7
A05p17060 Brassica napus HOM05D003463 ORTHO05D004206 7.3e-113 411.0 274 65.3
BraA05t20607Z Brassica rapa HOM05D003463 ORTHO05D004206 7.3e-113 411.0 274 65.3
BcaNung00300 Brassica carinata HOM05D003463 ORTHO05D004206 9.5e-113 410.6 274 65.3
C01p27890 Brassica napus HOM05D003463 ORTHO05D004206 9.5e-113 410.6 274 65.0
BolC1t02722H Brassica oleracea HOM05D003463 ORTHO05D004206 9.5e-113 410.6 274 65.0
Zm00001eb413080 Zea mays HOM05D003463 ORTHO05D004206 1.2e-112 410.2 269 68.4
Zm00001eb171790 Zea mays HOM05D003463 ORTHO05D004206 2.8e-112 409.1 269 68.0
Eucgr.E02490 Eucalyptus grandis HOM05D003463 ORTHO05D004206 1.5e-110 403.3 273 68.9
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 1.4e-108 396.7 258 70.2
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 5.6e-105 384.8 217 82.0
Hma1.2p1_2477F.1_g322850 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 4.0e-103 378.6 243 76.1
SHI10282 Sapria himalayana HOM05D003463 ORTHO05D004206 1.6e-99 366.7 266 60.5
Nn7g36849 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.5e-94 350.1 216 78.2
Actinidia27017 Actinidia chinensis HOM05D003463 ORTHO05D004206 2.0e-94 349.7 206 80.6
Cpa.g.sc8.254 Carica papaya HOM05D003463 ORTHO05D004206 2.7e-91 339.3 276 60.5
CSS0016126 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 5.8e-86 321.6 176 89.8
SEGI_02831 Sequoiadendron giganteum HOM05D003463 ORTHO05D004206 7.1e-84 314.7 270 53.0
Mapoly0021s0105 Marchantia polymorpha HOM05D003463 ORTHO05D004206 1.2e-62 244.2 275 44.7
Pp3c11_18840 Physcomitrium patens HOM05D003463 ORTHO05D004206 4.5e-62 242.3 271 45.4
AagrBONN_evm.TU.Sc2ySwM_117.2770 Anthoceros agrestis HOM05D003463 ORTHO05D004206 5.5e-60 235.3 273 42.5
Pp3c7_5920 Physcomitrium patens HOM05D003463 ORTHO05D004206 5.5e-60 235.3 271 44.3
Pp3c7_5929 Physcomitrium patens HOM05D003463 ORTHO05D004206 5.5e-60 235.3 271 44.3
unitig_8.g4614 Utricularia gibba HOM05D003463 ORTHO05D004206 1.3e-56 224.2 140 72.1
CSS0047242 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 1.3e-53 214.2 102 99.0
Nn2g14668 Nelumbo nucifera HOM05D003463 ORTHO05D004206 8.2e-48 194.9 118 74.6
CBR_g54148 Chara braunii HOM05D003463 ORTHO05D004206 3.4e-46 189.5 269 38.3
Nn2g15719 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.9e-36 157.1 109 73.4
HanXRQChr04g0111771 Helianthus annuus HOM05D003463 ORTHO05D004206 1.6e-35 154.1 105 67.6
RcHm_v2.0_Chr2g0131031 Rosa chinensis HOM05D003463 ORTHO05D004206 1.8e-31 140.6 103 64.1
Nn5g27117 Nelumbo nucifera HOM05D003463 ORTHO05D004206 7.0e-31 138.7 103 72.8
Nn5g27119 Nelumbo nucifera HOM05D003463 ORTHO05D004206 7.0e-31 138.7 103 72.8
HanXRQChr11g0343651 Helianthus annuus HOM05D001440 ORTHO05D001119 3.2e-28 129.8 79 73.4
Sc23g0004320 Simmondsia chinensis HOM05D000588 ORTHO05D000637 4.1e-23 112.8 86 61.6
PRCOL_00001206 Prasinoderma coloniale HOM05D003463 ORTHO05D004206 1.2e-22 111.3 294 28.6
HanXRQChr01g0020431 Helianthus annuus HOM05D002344 ORTHO05D004206 2.2e-21 107.1 79 63.3
HanXRQChr14g0432881 Helianthus annuus HOM05D003463 ORTHO05D004206 3.2e-20 103.2 81 61.7
Nn2g15720 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.8e-18 97.4 58 74.1
MCO02G192 Micromonas commoda HOM05D003463 ORTHO05D004206 8.8e-18 95.1 237 27.8
Nn5g27118 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.2e-14 84.7 46 80.4
Nn5g27120 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.2e-14 84.7 46 80.4
MCO11G062 Micromonas commoda HOM05D003463 ORTHO05D004206 2.0e-09 67.4 99 36.4
Cre17.g742700 Chlamydomonas reinhardtii HOM05D003463 ORTHO05D004206 1.4e-07 61.2 102 35.3
SMO135G0001 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 2.4e-07 60.5 64 43.8
SMO365G0046 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 2.4e-07 60.5 64 43.8


User provided reference genes

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