Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043726 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 3.7e-51 204.5 99 100.0
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 2.5e-07 58.9 26 96.2
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 3.3e-07 58.5 27 92.6
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 4.3e-07 58.2 27 88.9
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 4.3e-07 58.2 42 66.7
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 4.3e-07 58.2 27 88.9
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 4.3e-07 58.2 34 70.6
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 5.6e-07 57.8 38 60.5
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 7.3e-07 57.4 27 88.9
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 7.3e-07 57.4 27 88.9
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 7.3e-07 57.4 27 88.9
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 7.3e-07 57.4 26 88.5
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 7.3e-07 57.4 26 88.5
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 7.3e-07 57.4 27 88.9
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 7.3e-07 57.4 27 88.9
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 7.3e-07 57.4 27 88.9
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 7.3e-07 57.4 27 88.9
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 7.3e-07 57.4 27 88.9
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 7.3e-07 57.4 27 88.9
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 7.3e-07 57.4 27 88.9
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 7.3e-07 57.4 27 88.9
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 7.3e-07 57.4 27 85.2
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 9.5e-07 57.0 27 85.2
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 9.5e-07 57.0 27 85.2
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 9.5e-07 57.0 42 66.7
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 9.5e-07 57.0 29 79.3
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 9.5e-07 57.0 27 85.2
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 9.5e-07 57.0 27 85.2
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 9.5e-07 57.0 27 85.2
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 9.5e-07 57.0 27 85.2
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 9.5e-07 57.0 27 85.2
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 1.2e-06 56.6 27 85.2
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 1.2e-06 56.6 27 88.9
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 1.2e-06 56.6 27 88.9
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 1.2e-06 56.6 26 88.5
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 1.6e-06 56.2 27 85.2
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.6e-06 56.2 27 85.2
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 1.6e-06 56.2 27 85.2
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 1.6e-06 56.2 27 85.2
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.6e-06 56.2 27 85.2
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 2.1e-06 55.8 27 81.5
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 2.1e-06 55.8 27 85.2
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 2.1e-06 55.8 27 85.2
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 2.1e-06 55.8 27 81.5
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 2.1e-06 55.8 27 81.5
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 2.1e-06 55.8 26 84.6
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 2.1e-06 55.8 27 85.2
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 2.8e-06 55.5 27 85.2
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 2.8e-06 55.5 27 81.5
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 2.8e-06 55.5 27 85.2
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 3.6e-06 55.1 26 84.6
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 3.6e-06 55.1 26 84.6
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 3.6e-06 55.1 27 81.5
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 4.7e-06 54.7 27 81.5
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 4.7e-06 54.7 27 81.5
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 4.7e-06 54.7 27 81.5
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 4.7e-06 54.7 27 81.5
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 6.2e-06 54.3 27 85.2
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 6.2e-06 54.3 27 81.5
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 8.1e-06 53.9 27 77.8
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 8.1e-06 53.9 26 80.8
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 8.1e-06 53.9 26 80.8
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 8.1e-06 53.9 26 80.8
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 8.1e-06 53.9 27 77.8
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 8.1e-06 53.9 27 85.2
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 8.1e-06 53.9 27 85.2


User provided reference genes

Program Settings