Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 6.0e-52 207.2 104 100.0
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 1.5e-42 176.0 104 84.6
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 6.2e-41 170.6 94 89.4
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 2.4e-40 168.7 104 81.7
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 5.4e-37 157.5 104 78.8
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 7.1e-37 157.1 105 81.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.0e-35 153.3 104 75.0
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.8e-35 152.5 106 75.5
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 1.8e-35 152.5 102 78.4
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 2.3e-35 152.1 88 86.4
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 8.7e-35 150.2 90 83.3
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 8.7e-35 150.2 100 77.0
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 1.5e-34 149.4 85 87.1
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 1.9e-34 149.1 86 84.9
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.9e-34 149.1 88 85.2
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 3.3e-34 148.3 94 78.7
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 4.3e-34 147.9 94 78.7
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 5.6e-34 147.5 102 74.5
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 9.6e-34 146.7 89 82.0
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 9.6e-34 146.7 91 81.3
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 9.6e-34 146.7 94 77.7
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 9.6e-34 146.7 89 83.1
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.6e-33 146.0 88 83.0
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 2.1e-33 145.6 89 82.0
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.7e-33 144.8 88 84.1
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 6.2e-33 144.1 94 76.6
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 6.2e-33 144.1 98 73.5
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.2e-33 144.1 83 90.4
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.2e-33 144.1 83 90.4
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 6.2e-33 144.1 99 74.7
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 8.1e-33 143.7 87 80.5
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.1e-32 143.3 104 70.2
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.1e-32 143.3 81 91.4
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 1.1e-32 143.3 90 78.9
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 1.8e-32 142.5 104 68.3
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 2.4e-32 142.1 96 74.0
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 3.1e-32 141.7 82 84.1
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 3.1e-32 141.7 87 79.3
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 3.1e-32 141.7 104 66.3
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 4.0e-32 141.4 86 80.2
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 5.3e-32 141.0 88 79.5
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 6.9e-32 140.6 86 80.2
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 6.9e-32 140.6 105 71.4
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 6.9e-32 140.6 86 77.9
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 1.2e-31 139.8 88 79.5
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 1.2e-31 139.8 94 74.5
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 1.2e-31 139.8 88 80.7
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 1.5e-31 139.4 81 87.7
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 2.0e-31 139.0 86 81.4
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 2.6e-31 138.7 97 69.1
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 3.4e-31 138.3 104 68.3
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 3.4e-31 138.3 86 79.1
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 3.4e-31 138.3 94 76.6
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 3.4e-31 138.3 88 78.4
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 4.5e-31 137.9 85 85.9
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 5.8e-31 137.5 88 78.4
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 5.8e-31 137.5 100 69.0
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 7.6e-31 137.1 86 81.4
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.6e-31 137.1 83 86.7
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 7.6e-31 137.1 88 77.3
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 1.3e-30 136.3 87 78.2
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 1.3e-30 136.3 89 77.5
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 1.3e-30 136.3 89 77.5
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.3e-30 136.3 88 76.1
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.7e-30 136.0 88 78.4
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.7e-30 136.0 88 78.4
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 1.7e-30 136.0 86 80.2
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 1.7e-30 136.0 86 80.2
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 2.2e-30 135.6 86 80.2
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.8e-30 134.8 81 86.4
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 3.8e-30 134.8 81 81.5
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 4.9e-30 134.4 90 72.2
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.9e-30 134.4 105 65.7
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 6.5e-30 134.0 86 75.6
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 8.4e-30 133.7 86 77.9
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 1.4e-29 132.9 86 79.1
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.2e-29 131.7 87 79.3
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 3.2e-29 131.7 95 71.6
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 5.5e-29 131.0 82 80.5
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 5.5e-29 131.0 87 79.3
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 7.1e-29 130.6 95 72.6
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 1.2e-28 129.8 86 76.7
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.6e-28 129.4 88 75.0
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 2.1e-28 129.0 78 82.1
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 2.7e-28 128.6 79 78.5
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 3.5e-28 128.3 84 78.6
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 4.6e-28 127.9 81 79.0
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 6.0e-28 127.5 81 76.5
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.0e-27 126.7 84 73.8
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.8e-27 125.9 88 71.6
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 1.8e-27 125.9 99 63.6
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 2.3e-27 125.6 81 81.5
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 3.0e-27 125.2 77 85.7
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 3.0e-27 125.2 86 75.6
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.9e-27 124.8 83 73.5
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 8.7e-27 123.6 81 72.8
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 8.7e-27 123.6 81 79.0
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.9e-26 122.5 81 71.6
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.9e-26 122.5 73 86.3
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.5e-26 122.1 81 70.4
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 2.5e-26 122.1 81 71.6
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 2.5e-26 122.1 81 80.2
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 3.3e-26 121.7 82 70.7
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 3.3e-26 121.7 79 73.4
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 3.3e-26 121.7 81 77.8
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 4.3e-26 121.3 81 72.8
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 4.3e-26 121.3 81 72.8
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 4.3e-26 121.3 81 72.8
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 5.7e-26 120.9 75 82.7
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 7.4e-26 120.6 82 68.3
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 7.4e-26 120.6 82 68.3
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 7.4e-26 120.6 82 68.3
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 9.6e-26 120.2 81 71.6
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 9.6e-26 120.2 81 71.6
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 1.3e-25 119.8 82 67.1
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 1.3e-25 119.8 82 67.1
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 1.3e-25 119.8 82 67.1
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 1.3e-25 119.8 82 67.1
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.1e-25 119.0 81 74.1
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.1e-25 119.0 79 73.4
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 2.8e-25 118.6 78 78.2
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 3.7e-25 118.2 81 76.5
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 3.7e-25 118.2 72 80.6
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 8.2e-25 117.1 81 72.8
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 8.2e-25 117.1 81 69.1
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 8.2e-25 117.1 81 69.1
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 8.2e-25 117.1 81 69.1
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 8.2e-25 117.1 81 76.5
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 1.2e-23 113.2 76 73.7
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.0e-22 110.2 76 72.4
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 8.4e-22 107.1 79 73.4
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 3.5e-20 101.7 73 71.2
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 4.6e-20 101.3 97 58.8
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.3e-19 99.0 65 76.9
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.5e-18 95.5 63 76.2
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 2.5e-18 95.5 78 61.5
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 4.3e-18 94.7 77 62.3
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.1e-16 90.1 76 64.5
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 4.5e-15 84.7 74 63.5
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 7.7e-15 84.0 78 57.7
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 5.0e-14 81.3 56 73.2
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 5.0e-14 81.3 56 73.2
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 2.7e-12 75.5 77 50.6
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 3.6e-12 75.1 50 70.0
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 3.1e-08 62.0 39 76.9


User provided reference genes

Program Settings