Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043494 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.2e-112 409.8 197 100.0
CSS0048899 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.2e-61 240.4 200 59.5
CSS0034453 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.4e-55 218.0 185 60.5
CSS0037115 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.0e-53 211.5 208 55.8
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.1e-33 146.0 209 38.8
CSS0008839 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.5e-31 137.9 219 37.4
RhsimUnG0047500 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.5e-30 135.2 214 37.9
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.1e-28 128.6 216 35.2
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.1e-28 128.6 216 35.2
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 8.8e-28 127.9 214 36.9
CSS0039886 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.4e-25 120.6 149 39.6
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.1e-25 119.0 190 35.3
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 6.9e-25 118.2 208 33.2
CSS0024246 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.5e-24 117.1 213 31.9
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.0e-23 114.4 213 32.4
Rhsim07G0138700 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.2e-23 113.2 155 40.6
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 2.9e-23 112.8 214 31.3
Rhsim01G0155500 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.4e-22 110.5 209 33.0
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.5e-22 108.6 210 35.2
CSS0013917 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.2e-21 107.5 145 37.2
CSS0013490 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.6e-21 105.9 208 31.2
CSS0035533 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.1e-21 105.1 162 34.6
Rhsim11G0009800 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.9e-21 104.8 158 41.1
CSS0012014 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.4e-20 104.0 145 35.9
CSS0000654 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.0e-20 102.8 141 38.3
Rhsim03G0017000 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.1e-19 100.9 179 34.1
RcHm_v2.0_Chr7g0223051 Rosa chinensis HOM05D000003 ORTHO05D009449 4.4e-19 99.0 216 33.3
CSS0007562 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.4e-19 98.2 147 38.1
Rhsim03G0019700 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.3e-18 97.4 155 36.8
Rhsim03G0019800 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.3e-18 97.4 155 36.8
COL.COLO4_29577 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.7e-18 97.1 211 30.3
Rhsim09G0012500 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.7e-18 97.1 210 30.0
Rhsim09G0146400 Rhododendron simsii HOM05D008183 ORTHO05D007254 6.3e-18 95.1 136 38.2
RcHm_v2.0_Chr5g0040851 Rosa chinensis HOM05D000003 ORTHO05D000004 6.3e-18 95.1 207 29.5
Lj2g0023892 Lotus japonicus HOM05D000003 ORTHO05D007254 1.1e-17 94.4 215 30.7
vmacro19083 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 2.4e-17 93.2 186 31.2
vmacro21152 Vaccinium macrocarpon HOM05D003664 ORTHO05D003077 2.4e-17 93.2 145 35.9
vmacro23070 Vaccinium macrocarpon HOM05D000626 ORTHO05D007254 5.3e-17 92.0 138 36.2
CSS0000077 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.5e-16 90.5 145 34.5
CSS0027596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.5e-16 90.5 174 33.3
Rhsim01G0167200 Rhododendron simsii HOM05D000003 ORTHO05D007254 2.0e-16 90.1 187 31.6
COL.COLO4_07023 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.6e-16 89.7 174 36.2
CSS0001686 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.5e-16 89.4 162 34.6
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 3.5e-16 89.4 154 35.1
COL.COLO4_15583 Corchorus olitorius HOM05D000003 ORTHO05D000004 5.9e-16 88.6 184 35.3
COL.COLO4_18924 Corchorus olitorius HOM05D000003 ORTHO05D009449 5.9e-16 88.6 204 27.5
Rhsim03G0007600 Rhododendron simsii HOM05D033359 ORTHO05D007254 1.7e-15 87.0 183 29.5
BcaC09g49873 Brassica carinata HOM05D000003 ORTHO05D000004 2.9e-15 86.3 193 31.1
Lj5g0011892 Lotus japonicus HOM05D000003 ORTHO05D007254 3.8e-15 85.9 217 29.5
Rhsim01G0063000 Rhododendron simsii HOM05D008183 ORTHO05D007254 6.5e-15 85.1 170 34.7
CSS0023048 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.1e-14 84.3 131 35.9
Eucgr.C01564 Eucalyptus grandis HOM05D008183 ORTHO05D007254 1.1e-14 84.3 219 27.4
Rhsim01G0064200 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.1e-14 84.3 170 32.4
Rhsim02G0203700 Rhododendron simsii HOM05D000001 ORTHO05D009494 1.5e-14 84.0 136 36.0
Rhsim03G0134300 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.5e-14 83.2 133 37.6
COL.COLO4_04041 Corchorus olitorius HOM05D008133 ORTHO05D007254 4.2e-14 82.4 210 27.6
Rhsim01G0039500 Rhododendron simsii HOM05D000003 ORTHO05D007254 2.1e-13 80.1 198 31.3
RcHm_v2.0_Chr1g0344541 Rosa chinensis HOM05D000003 ORTHO05D000004 2.1e-13 80.1 202 29.7
Lj1P1217T36 Lonicera japonica HOM05D008183 ORTHO05D007254 2.7e-13 79.7 124 36.3
vmacro21511 Vaccinium macrocarpon HOM05D000235 ORTHO05D000147 2.7e-13 79.7 186 31.7
COL.COLO4_28797 Corchorus olitorius HOM05D000003 ORTHO05D000004 3.6e-13 79.3 170 32.4
Rhsim01G0199300 Rhododendron simsii HOM05D008183 ORTHO05D007254 3.6e-13 79.3 110 38.2
FvH4_2g04612 Fragaria vesca HOM05D008133 ORTHO05D009449 8.0e-13 78.2 168 31.5
Prupe.8G042700 Prunus persica HOM05D000003 ORTHO05D009449 8.0e-13 78.2 213 29.1
Rhsim12G0012200 Rhododendron simsii HOM05D004564 ORTHO05D000827 8.0e-13 78.2 130 36.9
Lj5g0017569 Lotus japonicus HOM05D000003 ORTHO05D007254 1.4e-12 77.4 215 26.5
Rhsim12G0010300 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.4e-12 77.4 212 28.8
RcHm_v2.0_Chr5g0012401 Rosa chinensis HOM05D000003 ORTHO05D010713 1.8e-12 77.0 215 29.3
FvH4_3g43651 Fragaria vesca HOM05D008133 ORTHO05D009449 3.0e-12 76.3 155 30.3
FvH4_2g06831 Fragaria vesca HOM05D011824 ORTHO05D035622 3.9e-12 75.9 205 29.3
CSS0016507 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 5.2e-12 75.5 130 34.6
Gorai.004G068400 Gossypium raimondii HOM05D008183 ORTHO05D007254 8.8e-12 74.7 209 26.3
AT2G34320 Arabidopsis thaliana HOM05D000003 ORTHO05D001091 1.1e-11 74.3 193 25.9
FvH4_3g10392 Fragaria vesca HOM05D008133 ORTHO05D009449 2.0e-11 73.6 176 30.1
Lj4g0019340 Lotus japonicus HOM05D000003 ORTHO05D000126 2.0e-11 73.6 211 28.4
Lj3g0020321 Lotus japonicus HOM05D000003 ORTHO05D000126 2.6e-11 73.2 211 28.4
CSS0035557 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000004 4.4e-11 72.4 70 50.0
vmacro05982 Vaccinium macrocarpon HOM05D002315 ORTHO05D002416 4.4e-11 72.4 118 32.2
Prupe.1G073500 Prunus persica HOM05D008133 ORTHO05D007254 5.7e-11 72.0 177 30.5
AT4G29090 Arabidopsis thaliana HOM05D000003 ORTHO05D000004 7.4e-11 71.6 210 27.1
COL.COLO4_20252 Corchorus olitorius HOM05D000003 ORTHO05D007254 9.7e-11 71.2 121 34.7
RcHm_v2.0_Chr1g0367181 Rosa chinensis HOM05D017965 ORTHO05D009449 9.7e-11 71.2 161 31.7
RcHm_v2.0_Chr1g0323031 Rosa chinensis HOM05D011824 ORTHO05D017030 1.3e-10 70.9 131 33.6
BcaC07g42703 Brassica carinata HOM05D001239 ORTHO05D000925 2.2e-10 70.1 200 29.0
Lj3P1014T21 Lonicera japonica HOM05D008183 ORTHO05D007254 2.2e-10 70.1 126 32.5
CSS0041363 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 2.8e-10 69.7 111 33.3
FvH4_1g29601 Fragaria vesca HOM05D000003 ORTHO05D000004 2.8e-10 69.7 210 23.8
Aa31LG8G10880 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.3e-10 68.6 208 26.9
BcaB01g00937 Brassica carinata HOM05D000003 ORTHO05D000004 8.2e-10 68.2 137 31.4
Lj2C65T12 Lonicera japonica HOM05D008183 ORTHO05D007254 8.2e-10 68.2 137 32.8
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.1e-09 67.8 170 25.3
COL.COLO4_35386 Corchorus olitorius HOM05D008133 ORTHO05D009449 1.1e-09 67.8 190 26.3
Lj1g0002506 Lotus japonicus HOM05D000003 ORTHO05D007254 1.1e-09 67.8 140 28.6
BolC3t16774H Brassica oleracea HOM05D000003 ORTHO05D001498 1.8e-09 67.0 139 28.8
Eucgr.B00966 Eucalyptus grandis HOM05D008183 ORTHO05D007254 1.8e-09 67.0 198 28.8
CSS0019282 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.4e-09 66.6 94 39.4
COL.COLO4_22912 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.4e-09 66.6 134 32.8
FvH4_3g32111 Fragaria vesca HOM05D000003 ORTHO05D000004 2.4e-09 66.6 148 27.0
BcaC01g05513 Brassica carinata HOM05D000003 ORTHO05D001498 3.1e-09 66.2 137 28.5
Cc04_g14660 Coffea canephora HOM05D000003 ORTHO05D000167 3.1e-09 66.2 216 28.2
COL.COLO4_37225 Corchorus olitorius HOM05D000003 ORTHO05D000126 3.1e-09 66.2 114 31.6
Aa31LG9G1700 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.1e-09 65.9 117 30.8
AUR62034246 Chenopodium quinoa HOM05D019958 ORTHO05D000022 7.0e-09 65.1 185 29.2
COL.COLO4_24033 Corchorus olitorius HOM05D000003 ORTHO05D000126 7.0e-09 65.1 156 26.9
COL.COLO4_16660 Corchorus olitorius HOM05D008133 ORTHO05D007254 9.1e-09 64.7 118 33.1
Lj5g0008185 Lotus japonicus HOM05D000003 ORTHO05D007254 9.1e-09 64.7 204 27.0
vmacro06821 Vaccinium macrocarpon HOM05D001548 ORTHO05D003901 9.1e-09 64.7 101 38.6
FAN26G2950 Fragaria x ananassa HOM05D011824 ORTHO05D017030 1.2e-08 64.3 133 31.6
Atru.chr13.2346 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-08 63.2 196 26.0
BraSC36t46057Z Brassica rapa HOM05D000003 ORTHO05D001498 2.6e-08 63.2 121 32.2
Aa31LG3G4630 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.5e-08 62.8 209 27.8
CSS0036848 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 3.5e-08 62.8 65 46.2
Lju110C5T8 Lonicera japonica HOM05D008183 ORTHO05D007254 3.5e-08 62.8 134 30.6
Aqoxy1G03514 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.9e-08 62.0 172 27.3
CSS0048373 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 5.9e-08 62.0 153 29.4
Lj1P289T15 Lonicera japonica HOM05D008183 ORTHO05D007254 5.9e-08 62.0 134 30.6
Aa31sc85G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.7e-08 61.6 209 26.3
Aqoxy4G00752 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 7.7e-08 61.6 209 28.7
COL.COLO4_17181 Corchorus olitorius HOM05D008183 ORTHO05D007254 7.7e-08 61.6 140 30.0
FvH4_5g26254 Fragaria vesca HOM05D011824 ORTHO05D009449 7.7e-08 61.6 182 26.9
Lj3P354T13 Lonicera japonica HOM05D008183 ORTHO05D007254 7.7e-08 61.6 77 39.0
Aa31LG8G11140 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.0e-07 61.2 196 25.0
Lj4C77T3 Lonicera japonica HOM05D008183 ORTHO05D007254 1.0e-07 61.2 170 32.4
PSO063G6968 Papaver somniferum HOM05D000003 ORTHO05D000004 1.3e-07 60.8 203 25.6
CSS0040440 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 2.2e-07 60.1 77 35.1
Manes.01G072601 Manihot esculenta HOM05D000003 ORTHO05D007254 2.2e-07 60.1 144 29.9
Prupe.6G203400 Prunus persica HOM05D000003 ORTHO05D000167 2.2e-07 60.1 189 25.4
Rhsim06G0198700 Rhododendron simsii HOM05D006733 ORTHO05D008406 2.2e-07 60.1 143 28.7
BolC8t50384H Brassica oleracea HOM05D000003 ORTHO05D001091 2.9e-07 59.7 205 26.3
COL.COLO4_30449 Corchorus olitorius HOM05D001332 ORTHO05D007191 2.9e-07 59.7 150 26.7
Lj1g0000256 Lotus japonicus HOM05D000003 ORTHO05D007254 2.9e-07 59.7 206 22.8
PSO541G4138 Papaver somniferum HOM05D000003 ORTHO05D001026 2.9e-07 59.7 170 28.2
Atru.chr10.239 Acer truncatum HOM05D000003 ORTHO05D000167 3.8e-07 59.3 212 25.0
BolC6t37438H Brassica oleracea HOM05D000003 ORTHO05D001498 3.8e-07 59.3 134 26.9
Lj2C40G9 Lonicera japonica HOM05D008183 ORTHO05D007254 3.8e-07 59.3 136 27.9
PSO384G4249 Papaver somniferum HOM05D000003 ORTHO05D001026 3.8e-07 59.3 219 23.7
BcaC09g50004 Brassica carinata HOM05D001239 ORTHO05D000925 5.0e-07 58.9 188 30.9
BolC2t06689H Brassica oleracea HOM05D001239 ORTHO05D000925 5.0e-07 58.9 202 24.8
COL.COLO4_29062 Corchorus olitorius HOM05D000001 ORTHO05D010338 5.0e-07 58.9 115 30.4
FvH4_7g06171 Fragaria vesca HOM05D000003 ORTHO05D000006 5.0e-07 58.9 105 35.2
PSO832G3899 Papaver somniferum HOM05D003407 ORTHO05D001026 5.0e-07 58.9 148 25.0
Aa31sc248G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.5e-07 58.5 198 21.2
BcaC03g15774 Brassica carinata HOM05D001239 ORTHO05D000925 6.5e-07 58.5 197 27.9
FvH4_5g15581 Fragaria vesca HOM05D000003 ORTHO05D000022 6.5e-07 58.5 185 27.0
Lj1g0027700 Lotus japonicus HOM05D000003 ORTHO05D025264 6.5e-07 58.5 193 26.4
Aa31sc128G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.5e-07 58.2 198 21.2
Aa31sc214G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.5e-07 58.2 120 29.2
Lj3P854T34 Lonicera japonica HOM05D008183 ORTHO05D007254 8.5e-07 58.2 116 33.6
PSO210G2487 Papaver somniferum HOM05D003407 ORTHO05D001026 8.5e-07 58.2 152 27.0
PSO478G0044 Papaver somniferum HOM05D003407 ORTHO05D001026 8.5e-07 58.2 158 24.7
PSO675G2494 Papaver somniferum HOM05D003407 ORTHO05D001026 8.5e-07 58.2 210 22.4
BcaNung01203 Brassica carinata HOM05D000003 ORTHO05D000004 1.1e-06 57.8 196 26.5
COL.COLO4_38392 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.1e-06 57.8 188 28.2
Eucgr.D02197 Eucalyptus grandis HOM05D008183 ORTHO05D007254 1.1e-06 57.8 145 33.8
RcHm_v2.0_Chr1g0346021 Rosa chinensis HOM05D008133 ORTHO05D009449 1.1e-06 57.8 183 26.2
Atru.chr1.1585 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-06 57.4 212 24.5
Atru.chr11.1423 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-06 57.4 198 27.3
Aa31sc18G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.5e-06 57.4 146 25.3
BolC8t51211H Brassica oleracea HOM05D004976 ORTHO05D004851 1.5e-06 57.4 198 24.2
CSS0006002 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.5e-06 57.4 91 38.5
COL.COLO4_10073 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.5e-06 57.4 190 26.3
COL.COLO4_25324 Corchorus olitorius HOM05D002467 ORTHO05D034859 1.5e-06 57.4 129 24.0
RcHm_v2.0_Chr7g0217171 Rosa chinensis HOM05D000003 ORTHO05D000167 1.5e-06 57.4 150 28.0
Sc19g0003070 Simmondsia chinensis HOM05D013236 ORTHO05D007254 1.5e-06 57.4 59 40.7
PSO832G1441 Papaver somniferum HOM05D000003 ORTHO05D001026 1.9e-06 57.0 149 24.8
Aa31LG10G9800 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.5e-06 56.6 100 34.0
Aa31LG2G21080 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.5e-06 56.6 100 34.0
BolC3t19864H Brassica oleracea HOM05D001239 ORTHO05D000925 2.5e-06 56.6 200 26.5
Nn5g30894 Nelumbo nucifera HOM05D030777 ORTHO05D000167 2.5e-06 56.6 119 29.4
Rhsim03G0007500 Rhododendron simsii HOM05D033359 ORTHO05D340347 2.5e-06 56.6 56 50.0
BcaC01g05560 Brassica carinata HOM05D001239 ORTHO05D000925 3.2e-06 56.2 200 27.5
Aa31sc98G30 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.2e-06 55.8 111 30.6
FvH4_5g31281 Fragaria vesca HOM05D008133 ORTHO05D009449 4.2e-06 55.8 129 28.7
Manes.03G145688 Manihot esculenta HOM05D031063 ORTHO05D025811 4.2e-06 55.8 125 28.0
Aqoxy6G02267 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.5e-06 55.5 143 25.9
Aa31LG3G3680 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.2e-06 55.1 100 31.0
PSO063G2448 Papaver somniferum HOM05D007919 ORTHO05D006738 7.2e-06 55.1 144 23.6
MBI16_g10843_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 9.4e-06 54.7 177 20.9


User provided reference genes

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