Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 2.2e-304 1048.1 517 100.0
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 4.6e-286 987.3 520 93.3
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 6.6e-285 983.4 518 93.2
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 7.3e-284 979.9 519 92.9
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 1.4e-282 975.7 522 91.6
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 2.4e-282 974.9 526 90.7
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 5.3e-282 973.8 525 91.2
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 7.6e-281 969.9 523 90.4
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 9.9e-281 969.5 519 91.1
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 3.8e-280 967.6 532 88.7
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 4.2e-279 964.1 520 90.6
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 3.5e-278 961.1 519 91.1
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 7.9e-278 959.9 521 90.2
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 7.9e-278 959.9 518 90.2
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.3e-277 959.1 524 89.7
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.3e-277 959.1 524 89.7
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 1.3e-277 959.1 515 91.1
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 1.7e-277 958.7 521 90.2
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 2.3e-277 958.4 525 89.3
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 2.3e-277 958.4 516 90.5
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.0e-277 958.0 526 89.4
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 5.1e-277 957.2 515 91.1
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 6.6e-277 956.8 525 89.5
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 8.7e-277 956.4 521 90.2
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 8.7e-277 956.4 531 88.7
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 8.7e-277 956.4 521 89.8
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.5e-276 955.7 521 89.8
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 3.3e-276 954.5 515 90.7
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 4.3e-276 954.1 565 84.2
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 5.6e-276 953.7 521 89.4
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 7.4e-276 953.4 516 90.5
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.6e-275 952.2 514 89.3
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 2.1e-275 951.8 521 89.6
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 2.1e-275 951.8 515 90.3
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 2.8e-275 951.4 554 85.4
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 3.6e-275 951.0 530 88.1
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.6e-275 951.0 526 88.0
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.8e-275 950.7 521 89.6
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 1.8e-274 948.7 516 88.2
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.8e-274 948.7 520 88.7
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.4e-274 948.3 521 89.1
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 3.1e-274 948.0 517 90.1
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 4.0e-274 947.6 517 90.5
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 6.9e-274 946.8 517 89.7
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.5e-273 945.7 526 87.5
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.5e-273 945.7 518 88.6
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.5e-273 945.7 518 88.6
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 2.0e-273 945.3 520 88.5
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 3.4e-273 944.5 518 88.6
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 7.6e-273 943.3 528 87.9
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 1.7e-272 942.2 530 87.4
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 3.2e-271 937.9 525 87.4
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 4.2e-271 937.6 528 86.9
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 5.5e-271 937.2 516 87.8
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 7.1e-271 936.8 520 87.3
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 9.3e-271 936.4 524 86.3
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 9.3e-271 936.4 517 88.8
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.2e-270 936.0 528 86.7
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.6e-270 935.6 522 86.8
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 2.7e-270 934.9 512 90.0
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.7e-270 934.9 528 86.6
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 2.7e-270 934.9 500 90.2
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 4.6e-270 934.1 527 86.7
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 7.9e-270 933.3 513 89.7
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 8.7e-269 929.9 500 90.6
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 1.1e-268 929.5 527 86.0
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.9e-268 928.7 523 87.2
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 2.5e-268 928.3 525 85.9
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 3.3e-268 927.9 528 85.4
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 5.6e-268 927.2 528 85.8
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 7.4e-268 926.8 525 86.5
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 1.3e-267 926.0 532 85.5
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.3e-267 926.0 523 86.8
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 1.6e-267 925.6 529 85.8
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 3.7e-267 924.5 524 86.1
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 4.8e-267 924.1 517 86.5
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 1.4e-266 922.5 523 86.8
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 1.4e-266 922.5 528 85.0
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 2.4e-266 921.8 519 86.9
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 2.4e-266 921.8 500 89.0
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.1e-266 921.4 546 83.0
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 4.0e-266 921.0 525 85.7
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 4.0e-266 921.0 525 85.7
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.0e-266 921.0 523 86.6
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 4.0e-266 921.0 522 87.0
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 6.9e-266 920.2 504 88.7
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.2e-265 919.5 520 87.1
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 1.5e-265 919.1 525 85.7
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 2.0e-265 918.7 525 85.7
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 2.0e-265 918.7 525 85.7
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 1.0e-264 916.4 522 86.2
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.7e-264 915.6 525 86.5
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 3.8e-264 914.4 526 85.0
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.9e-263 912.1 528 84.3
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 4.2e-263 911.0 521 85.0
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 4.2e-263 911.0 522 84.3
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 1.9e-260 902.1 522 83.5
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.6e-259 899.0 511 84.1
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.8e-258 895.6 512 84.4
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 3.1e-258 894.8 499 84.2
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.0e-257 892.1 522 82.6
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 3.2e-255 884.8 515 81.6
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.0e-253 879.8 518 83.2
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.0e-253 879.8 518 83.2
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 4.8e-251 870.9 517 81.6
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.2e-249 866.3 518 81.9
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.0e-248 863.2 528 78.0
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 3.7e-243 844.7 564 75.0
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.2e-241 839.7 528 76.5
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 1.1e-234 816.6 521 75.8
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 3.8e-232 808.1 521 75.4
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 5.0e-232 807.7 473 86.3
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.7e-230 802.0 499 76.2
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 7.5e-228 793.9 506 73.7
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.1e-226 790.0 512 71.9
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.7e-225 785.4 505 72.3
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.5e-223 779.6 505 72.1
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 5.7e-220 767.7 495 71.1
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 7.0e-218 760.8 518 70.8
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.7e-217 758.8 524 75.0
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.2e-214 750.0 527 74.0
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 1.8e-213 746.1 520 75.0
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 2.3e-213 745.7 412 87.9
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 7.3e-207 724.2 522 72.4
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 4.7e-206 721.5 491 68.6
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 3.2e-202 708.8 379 92.9
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 2.3e-189 666.0 536 60.3
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 2.0e-188 662.9 499 64.9
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 7.8e-185 651.0 419 80.0
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 4.3e-183 645.2 346 92.5
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 9.5e-183 644.0 344 93.0
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.4e-162 577.0 518 59.5
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 7.6e-156 554.7 290 91.0
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 6.4e-155 551.6 355 78.9
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 3.2e-154 549.3 491 54.0
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 1.3e-150 537.3 289 89.6
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 2.5e-146 523.1 276 94.9
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.5e-139 498.4 356 72.5
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.7e-134 483.8 510 50.2
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 3.0e-128 463.0 502 49.0
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 1.7e-123 447.2 285 80.4
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 1.7e-102 377.5 190 92.6
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 6.6e-83 312.4 409 40.8
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 7.3e-66 255.8 325 46.8
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 2.1e-65 254.2 362 44.8
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.9e-46 190.7 120 74.2
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 1.4e-40 171.8 93 86.0
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 2.0e-31 141.4 79 84.8
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 3.2e-29 134.0 93 67.7
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.4e-24 118.6 68 82.4
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 2.1e-20 104.8 76 67.1
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 4.1e-16 90.5 72 66.7
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 1.4e-13 82.0 125 43.2
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 7.9e-12 76.3 48 68.8
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.1e-08 65.9 35 82.9


User provided reference genes

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