Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.9e-120 435.3 222 100.0
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.0e-117 426.8 222 98.2
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.0e-109 398.7 204 99.0
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.0e-109 398.7 204 99.0
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.7e-107 391.7 202 98.0
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 1.8e-77 293.1 219 71.7
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 9.1e-74 280.8 220 65.9
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 4.5e-73 278.5 201 70.1
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 8.8e-69 264.2 199 69.8
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 1.2e-65 253.8 173 74.6
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.2e-65 253.8 185 71.4
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 1.7e-64 250.0 173 74.0
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 8.5e-64 247.7 171 74.3
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 4.7e-62 241.9 158 77.2
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 8.0e-62 241.1 198 64.1
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 1.0e-61 240.7 152 78.9
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 1.4e-61 240.4 198 64.1
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 5.2e-61 238.4 173 68.2
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 4.4e-60 235.3 158 72.2
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.3e-59 233.8 172 68.0
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.7e-59 233.4 172 68.0
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.7e-59 233.4 172 68.0
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.2e-59 233.0 172 68.0
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 3.7e-59 232.3 197 63.5
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 1.4e-58 230.3 173 68.8
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 1.4e-58 230.3 199 63.3
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 1.8e-58 229.9 169 68.0
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 2.4e-58 229.6 159 71.7
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 3.1e-58 229.2 185 65.9
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 7.0e-58 228.0 159 72.3
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.6e-57 226.9 186 64.5
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 2.0e-57 226.5 152 73.7
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 2.0e-57 226.5 147 78.9
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 3.5e-57 225.7 169 66.9
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 7.7e-57 224.6 172 68.0
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 7.7e-57 224.6 172 68.0
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 1.3e-56 223.8 169 67.5
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 3.8e-56 222.2 197 59.4
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 5.0e-56 221.9 172 65.7
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 8.6e-56 221.1 186 64.5
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.1e-55 220.7 174 64.9
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 1.5e-55 220.3 146 73.3
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.5e-55 219.5 159 69.2
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.5e-55 219.5 159 69.2
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 4.3e-55 218.8 169 65.1
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.6e-54 216.9 156 69.2
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 2.1e-54 216.5 172 64.5
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 4.7e-54 215.3 172 64.5
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 4.7e-54 215.3 161 67.1
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 8.0e-54 214.5 126 81.0
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 1.0e-53 214.2 126 81.0
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 3.0e-53 212.6 203 59.6
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 4.0e-53 212.2 173 65.3
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 6.8e-53 211.5 156 69.9
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 3.4e-52 209.1 161 68.9
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 4.4e-52 208.8 162 66.0
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 5.7e-52 208.4 161 68.3
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 7.5e-52 208.0 161 67.1
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 7.5e-52 208.0 157 67.5
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 2.9e-51 206.1 173 60.1
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 1.4e-50 203.8 157 67.5
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 3.2e-50 202.6 156 68.6
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 5.4e-50 201.8 158 66.5
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 9.2e-50 201.1 162 65.4
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 9.2e-50 201.1 214 51.9
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 9.2e-50 201.1 160 62.5
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 2.7e-49 199.5 184 57.6
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 2.7e-49 199.5 170 62.9
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 3.5e-49 199.1 166 64.5
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 4.6e-49 198.7 200 55.0
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 5.9e-49 198.4 176 59.1
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 7.8e-49 198.0 199 54.8
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.0e-48 197.6 175 60.0
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 1.3e-48 197.2 197 55.8
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 2.3e-48 196.4 162 63.6
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 2.3e-48 196.4 172 63.4
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 3.0e-48 196.1 171 60.2
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 3.0e-48 196.1 176 59.7
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 3.0e-48 196.1 176 59.7
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 3.0e-48 196.1 176 59.7
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 3.9e-48 195.7 162 63.6
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 5.0e-48 195.3 200 54.5
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 6.6e-48 194.9 173 62.4
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 8.6e-48 194.5 175 59.4
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 1.5e-47 193.7 176 59.1
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 2.5e-47 193.0 174 59.2
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 2.5e-47 193.0 150 66.7
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 3.6e-46 189.1 171 60.2
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 8.9e-45 184.5 121 75.2
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 3.4e-44 182.6 175 54.3
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 4.4e-44 182.2 165 63.0
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 7.5e-44 181.4 164 58.5
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 1.3e-43 180.6 159 62.3
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 2.2e-43 179.9 163 58.9
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 6.4e-43 178.3 204 49.5
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.1e-42 177.6 213 47.4
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.4e-42 176.4 163 57.1
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.4e-42 176.4 163 57.1
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 4.6e-41 172.2 203 53.2
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 7.8e-41 171.4 159 59.7
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.0e-40 171.0 162 56.2
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 3.0e-40 169.5 167 53.9
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 3.0e-40 169.5 174 52.3
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 5.0e-40 168.7 162 55.6
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 6.6e-40 168.3 155 54.2
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 1.8e-37 160.2 129 63.6
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 2.3e-37 159.8 147 59.2
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 2.2e-35 153.3 145 57.9
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 2.9e-35 152.9 110 70.9
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 4.9e-35 152.1 121 64.5
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 3.9e-32 142.5 136 56.6
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 2.1e-30 136.7 102 63.7
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 6.2e-30 135.2 104 64.4
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.9e-27 126.3 95 66.3
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 3.8e-27 125.9 103 61.2
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 8.4e-27 124.8 135 56.3
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 2.3e-24 116.7 80 66.2
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 1.1e-23 114.4 104 59.6
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 3.5e-17 92.8 88 55.7
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 2.1e-14 83.6 69 58.0
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 2.2e-11 73.6 103 49.5
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 8.4e-11 71.6 121 37.2
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 1.9e-10 70.5 46 69.6
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 4.2e-10 69.3 120 35.8
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 8.7e-08 61.6 63 46.0
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 1.1e-07 61.2 150 30.0
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.9e-07 60.5 149 34.2
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 1.9e-07 60.5 150 30.0
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 4.3e-07 59.3 63 44.4


User provided reference genes

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