Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043192 Camellia sinensis var. sinensis HOM05D005132 ORTHO05D005823 2.1e-30 134.8 58 100.0
CSS0032993 Camellia sinensis var. sinensis HOM05D005132 ORTHO05D005823 1.1e-18 95.9 43 95.3
CSS0047631 Camellia sinensis var. sinensis HOM05D005132 ORTHO05D005823 1.1e-18 95.9 43 95.3
Oeu056871.1 Olea europaea HOM05D005132 ORTHO05D005823 8.6e-16 86.3 45 80.0
Haze_19646 Corylus avellana HOM05D005132 ORTHO05D005823 1.5e-15 85.5 43 86.0
Atru.chr8.1454 Acer truncatum HOM05D005132 ORTHO05D005823 1.9e-15 85.1 43 83.7
AL6G16110 Arabidopsis lyrata HOM05D005132 ORTHO05D005823 1.9e-15 85.1 43 83.7
AT5G06140 Arabidopsis thaliana HOM05D005132 ORTHO05D005823 1.9e-15 85.1 43 83.7
Carub.0006s0502 Capsella rubella HOM05D005132 ORTHO05D005823 1.9e-15 85.1 43 83.7
CiPaw.09G016600 Carya illinoinensis HOM05D005132 ORTHO05D005823 1.9e-15 85.1 43 83.7
Dinv21174 Davidia involucrata HOM05D005132 ORTHO05D005823 1.9e-15 85.1 43 83.7
CANSAT64G2405 Cannabis sativa HOM05D005132 ORTHO05D005823 2.5e-15 84.7 43 81.4
BcaC06g32323 Brassica carinata HOM05D005132 ORTHO05D005823 3.3e-15 84.3 43 79.1
C09p70690 Brassica napus HOM05D005132 ORTHO05D005823 3.3e-15 84.3 43 79.1
BolC9t59825H Brassica oleracea HOM05D005132 ORTHO05D005823 3.3e-15 84.3 43 79.1
Cfa016640 Carpinus fangiana HOM05D005132 ORTHO05D005823 4.3e-15 84.0 43 83.7
Cc00_g15480 Coffea canephora HOM05D005132 ORTHO05D005823 4.3e-15 84.0 43 81.4
Dinv31714 Davidia involucrata HOM05D005132 ORTHO05D005823 4.3e-15 84.0 43 83.7
Gorai.006G153000 Gossypium raimondii HOM05D005132 ORTHO05D005823 4.3e-15 84.0 43 83.7
Lj5g0026419 Lotus japonicus HOM05D005132 ORTHO05D005823 4.3e-15 84.0 43 83.7
Nn2g14214 Nelumbo nucifera HOM05D005132 ORTHO05D005823 4.3e-15 84.0 44 81.8
QL07p038312 Quercus lobata HOM05D005132 ORTHO05D005823 4.3e-15 84.0 43 83.7
TAR633G0805 Trochodendron aralioides HOM05D005132 ORTHO05D005823 4.3e-15 84.0 43 81.4
Aa31LG11G7120 Aethionema arabicum HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
arahy.Tifrunner.gnm1.ann1.3C6LBG Arachis hypogaea HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
arahy.Tifrunner.gnm1.ann1.XB6NYF Arachis hypogaea HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
CARHR206850 Cardamine hirsuta HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
Ca_22304_v3 Cicer arietinum L. HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
Ciclev10013553m.g Citrus clementina HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
Duzib093G1682 Durio zibethinus HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
Glyma.02G201400 Glycine max HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
Glyma.10G075200 Glycine max HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
Lalb_Chr02g0154801 Lupinus albus HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
MD12G1029600 Malus domestica HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
Nn6g34827 Nelumbo nucifera HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
Oeu017691.1 Olea europaea HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
Sp6g36750 Schrenkiella parvula HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
THA.LOC104816597 Tarenaya hassleriana HOM05D005132 ORTHO05D005823 5.6e-15 83.6 43 81.4
MSTRG.26627 Avicennia marina HOM05D005132 ORTHO05D005823 7.3e-15 83.2 43 79.1
A10p30280 Brassica napus HOM05D005132 ORTHO05D005823 7.3e-15 83.2 43 76.7
BraA10t45066Z Brassica rapa HOM05D005132 ORTHO05D005823 7.3e-15 83.2 43 76.7
Ca_30897_v3 Cicer arietinum L. HOM05D005132 ORTHO05D005823 7.3e-15 83.2 43 81.4
Manes.09G053000 Manihot esculenta HOM05D005132 ORTHO05D005823 7.3e-15 83.2 43 79.1
Prupe.7G102200 Prunus persica HOM05D005132 ORTHO05D005823 7.3e-15 83.2 43 79.1
PGR004G2516 Punica granatum HOM05D005132 ORTHO05D005823 7.3e-15 83.2 43 81.4
Rhsim03G0070200 Rhododendron simsii HOM05D005132 ORTHO05D005823 7.3e-15 83.2 44 77.3
Aqoxy2G01075 Aquilegia oxysepala HOM05D005132 ORTHO05D005823 9.5e-15 82.8 43 79.1
FvH4_6g19390 Fragaria vesca HOM05D005132 ORTHO05D005823 9.5e-15 82.8 43 79.1
FAN02G1643 Fragaria x ananassa HOM05D005132 ORTHO05D005823 9.5e-15 82.8 43 79.1
FAN05G1205 Fragaria x ananassa HOM05D005132 ORTHO05D005823 9.5e-15 82.8 43 79.1
FAN14G5731 Fragaria x ananassa HOM05D005132 ORTHO05D005823 9.5e-15 82.8 43 79.1
Gohir.A09G141200 Gossypium hirsutum HOM05D005132 ORTHO05D005823 9.5e-15 82.8 43 81.4
Gohir.D09G133500 Gossypium hirsutum HOM05D005132 ORTHO05D005823 9.5e-15 82.8 43 81.4
Medtr1g059650 Medicago truncatula HOM05D005132 ORTHO05D005823 9.5e-15 82.8 43 79.1
RcHm_v2.0_Chr3g0474681 Rosa chinensis HOM05D005132 ORTHO05D005823 9.5e-15 82.8 43 79.1
Hund03937 Selenicereus undatus HOM05D005132 ORTHO05D005823 9.5e-15 82.8 43 79.1
TWI74G0814 Tripterygium wilfordii HOM05D005132 ORTHO05D005823 9.5e-15 82.8 43 79.1
TWI77G0075 Tripterygium wilfordii HOM05D005132 ORTHO05D005823 9.5e-15 82.8 43 81.4
COL.COLO4_03548 Corchorus olitorius HOM05D005132 ORTHO05D005823 1.2e-14 82.4 43 79.1
ECA248G1378 Erigeron canadensis HOM05D005132 ORTHO05D005823 1.2e-14 82.4 43 79.1
Migut.J01005 Erythranthe guttata HOM05D005132 ORTHO05D005823 1.2e-14 82.4 43 81.4
Thhalv10013711m.g Eutrema salsugineum HOM05D005132 ORTHO05D005823 1.2e-14 82.4 43 79.1
Lj2A142G15 Lonicera japonica HOM05D005132 ORTHO05D005823 1.2e-14 82.4 43 79.1
Thecc.05G094200 Theobroma cacao HOM05D005132 ORTHO05D005823 1.2e-14 82.4 43 79.1
Duzib106G2047 Durio zibethinus HOM05D005132 ORTHO05D005823 1.6e-14 82.0 43 79.1
SalBow3G0486 Salvia bowleyana HOM05D005132 ORTHO05D005823 1.6e-14 82.0 43 76.7
TAR623G1340 Trochodendron aralioides HOM05D005132 ORTHO05D005823 1.6e-14 82.0 43 79.1
vmacro07442 Vaccinium macrocarpon HOM05D005132 ORTHO05D005823 1.6e-14 82.0 44 75.0
Ah.08g210440 Amaranthus hybridus HOM05D002070 ORTHO05D005823 2.1e-14 81.6 43 76.7
EL10Ac7g16880 Beta vulgaris HOM05D005132 ORTHO05D005823 2.1e-14 81.6 43 76.7
AUR62006221 Chenopodium quinoa HOM05D005132 ORTHO05D005823 2.1e-14 81.6 43 76.7
Nitab4.5_0001875g0030 Nicotiana tabacum HOM05D005132 ORTHO05D005823 2.1e-14 81.6 43 81.4
Psat6g084200 Pisum sativum HOM05D005132 ORTHO05D005823 2.1e-14 81.6 43 79.1
GSVIVG01033883001 Vitis vinifera HOM05D005132 ORTHO05D005823 2.1e-14 81.6 43 79.1
Phvul.007G153200 Phaseolus vulgaris HOM05D005132 ORTHO05D005823 2.8e-14 81.3 43 79.1
TPR.G14792 Trifolium pratense HOM05D005132 ORTHO05D005823 2.8e-14 81.3 43 76.7
Hma1.2p1_0769F.1_g215730 Hydrangea macrophylla HOM05D005132 ORTHO05D005823 3.6e-14 80.9 43 79.1
Hma1.2p1_0769F.1_g215740 Hydrangea macrophylla HOM05D005132 ORTHO05D005823 3.6e-14 80.9 43 79.1
MD14G1029900 Malus domestica HOM05D005132 ORTHO05D005823 3.6e-14 80.9 43 76.7
Cpa.g.sc104.100 Carica papaya HOM05D005132 ORTHO05D005823 4.7e-14 80.5 43 79.1
CDE06G1014 Ceratophyllum demersum HOM05D005132 ORTHO05D005823 4.7e-14 80.5 43 76.7
Peaxi162Scf00069g00611 Petunia axillaris HOM05D005132 ORTHO05D005823 4.7e-14 80.5 43 79.1
Solyc09g010130.4 Solanum lycopersicum HOM05D005132 ORTHO05D005823 4.7e-14 80.5 43 79.1
Sopen09g004870 Solanum pennellii HOM05D005132 ORTHO05D005823 4.7e-14 80.5 43 79.1
CDE08G1477 Ceratophyllum demersum HOM05D005132 ORTHO05D005823 6.2e-14 80.1 43 76.7
SGA_v2.0_scaffold318G48481 Striga asiatica HOM05D005132 ORTHO05D005823 6.2e-14 80.1 42 81.0
Ah.15g090790 Amaranthus hybridus HOM05D005132 ORTHO05D005823 8.1e-14 79.7 43 76.7
CSS0005836 Camellia sinensis var. sinensis HOM05D005132 ORTHO05D005823 8.1e-14 79.7 43 81.4
CSS0048654 Camellia sinensis var. sinensis HOM05D005132 ORTHO05D005823 8.1e-14 79.7 43 81.4
CAN.G397.82 Capsicum annuum HOM05D005132 ORTHO05D005823 8.1e-14 79.7 43 79.1
PGSC0003DMG400008862 Solanum tuberosum HOM05D005132 ORTHO05D005823 8.1e-14 79.7 43 79.1
HanXRQChr01g0010191 Helianthus annuus HOM05D005132 ORTHO05D005823 1.1e-13 79.3 43 74.4
Sed0017122 Sechium edule HOM05D005132 ORTHO05D005823 1.1e-13 79.3 44 77.3
DCAR_013410 Daucus carota HOM05D005132 ORTHO05D005823 1.4e-13 79.0 43 76.7
Gohir.D04G097400 Gossypium hirsutum HOM05D005132 ORTHO05D005823 1.4e-13 79.0 43 74.4
Gorai.009G400000 Gossypium raimondii HOM05D005132 ORTHO05D005823 1.4e-13 79.0 43 74.4
HanXRQChr13g0390111 Helianthus annuus HOM05D005132 ORTHO05D005823 1.4e-13 79.0 44 72.7
Lsat_1_v5_gn_5_165621 Lactuca sativa HOM05D005132 ORTHO05D005823 1.8e-13 78.6 43 74.4
Sabra16G0079100 Salix brachista HOM05D005132 ORTHO05D005823 1.8e-13 78.6 43 74.4
Sabra16G0081700 Salix brachista HOM05D005132 ORTHO05D005823 1.8e-13 78.6 43 74.4
PSO339G3236 Papaver somniferum HOM05D005132 ORTHO05D005823 2.3e-13 78.2 43 72.1
PSO801G0294 Papaver somniferum HOM05D005132 ORTHO05D005823 2.3e-13 78.2 43 72.1
VMungo0720G1157 Vigna mungo HOM05D005132 ORTHO05D005823 2.3e-13 78.2 43 76.7
Zm00001eb147050 Zea mays HOM05D005132 ORTHO05D005823 2.3e-13 78.2 44 77.3
ClCG04G010170 Citrullus lanatus HOM05D005132 ORTHO05D005823 3.1e-13 77.8 44 72.7
MELO3C024558.2 Cucumis melo HOM05D005132 ORTHO05D005823 3.1e-13 77.8 44 72.7
CsaV3_6G040790 Cucumis sativus L. HOM05D005132 ORTHO05D005823 3.1e-13 77.8 44 72.7
Sabra06G0161500 Salix brachista HOM05D005132 ORTHO05D005823 3.1e-13 77.8 43 74.4
Zm00001eb366800 Zea mays HOM05D005132 ORTHO05D005823 3.1e-13 77.8 44 75.0
Eucgr.A02640 Eucalyptus grandis HOM05D005132 ORTHO05D005823 4.0e-13 77.4 43 74.4
Gohir.A04G048400 Gossypium hirsutum HOM05D005132 ORTHO05D005823 5.2e-13 77.0 43 72.1
ATR0820G210 Amborella trichopoda HOM05D005132 ORTHO05D005823 6.8e-13 76.6 43 76.7
Potri.016G076400 Populus trichocarpa HOM05D005132 ORTHO05D005823 6.8e-13 76.6 43 72.1
Hund19900 Selenicereus undatus HOM05D005132 ORTHO05D005823 1.2e-12 75.9 42 73.8
Os01g0862300 Oryza sativa ssp. japonica HOM05D005132 ORTHO05D005823 2.0e-12 75.1 44 75.0
Potri.006G209600 Populus trichocarpa HOM05D005132 ORTHO05D005823 2.0e-12 75.1 43 74.4
AagrBONN_evm.TU.Sc2ySwM_362.2636 Anthoceros agrestis HOM05D005132 ORTHO05D005823 4.4e-12 73.9 43 67.4
Mapoly0051s0019 Marchantia polymorpha HOM05D005132 ORTHO05D005823 5.8e-12 73.6 43 69.8
HPP92_001972 Vanilla planifolia HOM05D005132 ORTHO05D005823 1.7e-11 72.0 43 72.1
SMO347G0437 Selaginella moellendorffii HOM05D005132 ORTHO05D005823 6.4e-11 70.1 43 67.4
SHI23818 Sapria himalayana HOM05D005132 ORTHO05D005823 1.4e-10 68.9 43 62.8
SEGI_36568 Sequoiadendron giganteum HOM05D005132 ORTHO05D005823 9.2e-10 66.2 43 65.1
Pp3c4_27410 Physcomitrium patens HOM05D005132 ORTHO05D005823 1.2e-06 55.8 41 53.7
CBR_g20439 Chara braunii HOM05D005132 ORTHO05D005823 2.8e-06 54.7 44 50.0
vmacro02917 Vaccinium macrocarpon HOM05D002814 ORTHO05D003303 8.1e-06 53.1 43 51.2


User provided reference genes

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