Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042990 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.3e-35 152.5 78 100.0
CSS0042870 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 2.7e-28 128.3 67 100.0
CSS0007150 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 4.7e-17 90.9 67 79.1
CSS0047950 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 4.7e-17 90.9 67 79.1
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 8.6e-11 70.1 50 78.0
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 1.5e-10 69.3 50 78.0
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 1.9e-10 68.9 50 76.0
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 1.9e-10 68.9 50 76.0
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 5.6e-10 67.4 50 76.0
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 7.3e-10 67.0 50 72.0
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 7.3e-10 67.0 50 76.0
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 7.3e-10 67.0 50 74.0
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 9.5e-10 66.6 50 74.0
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 9.5e-10 66.6 50 74.0
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.2e-09 66.2 50 70.0
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.2e-09 66.2 50 70.0
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 1.2e-09 66.2 50 74.0
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 1.2e-09 66.2 50 72.0
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 1.2e-09 66.2 50 72.0
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 1.2e-09 66.2 50 72.0
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 1.2e-09 66.2 50 72.0
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 1.2e-09 66.2 50 72.0
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 1.2e-09 66.2 50 72.0
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 1.6e-09 65.9 50 70.0
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.6e-09 65.9 50 72.0
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.6e-09 65.9 50 72.0
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 1.6e-09 65.9 50 70.0
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 1.6e-09 65.9 50 72.0
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 1.6e-09 65.9 50 74.0
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 2.1e-09 65.5 50 74.0
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 2.1e-09 65.5 50 70.0
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 2.1e-09 65.5 50 70.0
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 2.1e-09 65.5 50 74.0
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 2.1e-09 65.5 50 68.0
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 2.8e-09 65.1 50 74.0
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 2.8e-09 65.1 50 72.0
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.8e-09 65.1 50 72.0
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.8e-09 65.1 50 72.0
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.8e-09 65.1 50 72.0
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.8e-09 65.1 50 72.0
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 2.8e-09 65.1 50 74.0
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 3.6e-09 64.7 50 70.0
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 4.7e-09 64.3 50 70.0
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 4.7e-09 64.3 50 68.0
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 4.7e-09 64.3 50 68.0
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 4.7e-09 64.3 50 74.0
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 6.2e-09 63.9 50 66.0
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 6.2e-09 63.9 50 68.0
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 6.2e-09 63.9 48 70.8
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 6.2e-09 63.9 50 70.0
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 8.0e-09 63.5 50 68.0
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 8.0e-09 63.5 50 70.0
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 8.0e-09 63.5 50 70.0
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 8.0e-09 63.5 50 70.0
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 8.0e-09 63.5 50 70.0
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 1.0e-08 63.2 50 68.0
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 1.0e-08 63.2 50 72.0
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 1.0e-08 63.2 50 72.0
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 1.0e-08 63.2 50 70.0
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 1.0e-08 63.2 50 70.0
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.0e-08 63.2 50 70.0
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 1.4e-08 62.8 50 68.0
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.4e-08 62.8 50 70.0
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 1.4e-08 62.8 50 72.0
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 1.4e-08 62.8 50 72.0
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 1.4e-08 62.8 50 70.0
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 1.8e-08 62.4 50 68.0
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.8e-08 62.4 50 70.0
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 1.8e-08 62.4 50 70.0
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 2.3e-08 62.0 50 70.0
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 2.3e-08 62.0 50 68.0
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 2.3e-08 62.0 50 70.0
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 3.1e-08 61.6 50 70.0
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 3.1e-08 61.6 50 70.0
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 3.1e-08 61.6 50 66.0
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 3.1e-08 61.6 50 68.0
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 3.1e-08 61.6 50 68.0
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 3.1e-08 61.6 50 68.0
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 4.0e-08 61.2 50 68.0
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 4.0e-08 61.2 50 68.0
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 4.0e-08 61.2 50 68.0
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 4.0e-08 61.2 50 68.0
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 4.0e-08 61.2 50 68.0
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 4.0e-08 61.2 50 68.0
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 4.0e-08 61.2 50 68.0
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 4.0e-08 61.2 50 70.0
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 4.0e-08 61.2 50 70.0
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 4.0e-08 61.2 50 66.0
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 4.0e-08 61.2 50 70.0
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 5.2e-08 60.8 50 66.0
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 5.2e-08 60.8 50 68.0
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 5.2e-08 60.8 50 68.0
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 5.2e-08 60.8 50 68.0
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 5.2e-08 60.8 50 68.0
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 5.2e-08 60.8 50 68.0
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 5.2e-08 60.8 50 66.0
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 5.2e-08 60.8 50 68.0
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 5.2e-08 60.8 50 66.0
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 5.2e-08 60.8 50 68.0
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 6.8e-08 60.5 50 68.0
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 6.8e-08 60.5 50 64.0
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 6.8e-08 60.5 50 68.0
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 6.8e-08 60.5 50 66.0
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 6.8e-08 60.5 50 68.0
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 6.8e-08 60.5 50 66.0
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 6.8e-08 60.5 50 66.0
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 6.8e-08 60.5 50 68.0
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 6.8e-08 60.5 50 68.0
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 8.9e-08 60.1 50 66.0
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 8.9e-08 60.1 50 68.0
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 1.2e-07 59.7 50 68.0
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 1.2e-07 59.7 50 66.0
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 1.2e-07 59.7 50 66.0
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 1.2e-07 59.7 50 68.0
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 1.5e-07 59.3 50 66.0
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 1.5e-07 59.3 50 64.0
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 1.5e-07 59.3 50 66.0
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 2.0e-07 58.9 50 64.0
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 2.0e-07 58.9 50 64.0
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 2.0e-07 58.9 50 62.0
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 2.0e-07 58.9 50 70.0
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 2.6e-07 58.5 50 66.0
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 3.4e-07 58.2 50 66.0
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 3.4e-07 58.2 50 66.0
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 3.4e-07 58.2 50 66.0
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 3.4e-07 58.2 50 66.0
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 3.4e-07 58.2 50 66.0
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 3.4e-07 58.2 50 64.0
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 4.4e-07 57.8 50 62.0
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 4.4e-07 57.8 50 64.0
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 4.4e-07 57.8 50 64.0
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 4.4e-07 57.8 50 64.0
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 5.8e-07 57.4 50 60.0
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 5.8e-07 57.4 50 64.0
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 7.5e-07 57.0 50 64.0
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 7.5e-07 57.0 50 64.0
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 1.7e-06 55.8 50 60.0
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 1.7e-06 55.8 50 66.0
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 1.7e-06 55.8 50 62.0
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 1.7e-06 55.8 50 64.0
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 2.2e-06 55.5 50 58.0
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 2.2e-06 55.5 50 64.0
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 3.7e-06 54.7 50 62.0
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 4.9e-06 54.3 50 62.0
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 4.9e-06 54.3 50 58.0
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 8.3e-06 53.5 50 62.0


User provided reference genes

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