Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042974 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 0.0e+00 1181.8 590 100.0
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 2.6e-293 1011.5 584 88.0
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 1.2e-287 992.6 572 88.3
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 4.4e-277 957.6 584 83.0
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 7.6e-277 956.8 584 83.2
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 8.1e-271 936.8 567 83.1
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 6.3e-255 884.0 567 78.3
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 2.4e-254 882.1 564 78.5
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 2.6e-253 878.6 564 78.4
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 3.2e-251 871.7 574 76.8
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 2.7e-250 868.6 564 77.3
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 1.8e-249 865.9 514 86.8
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 2.3e-249 865.5 564 76.6
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 3.9e-249 864.8 564 78.7
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 5.1e-249 864.4 562 79.0
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 5.7e-248 860.9 570 75.6
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 1.6e-247 859.4 566 77.7
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 2.8e-247 858.6 564 75.9
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 3.7e-247 858.2 564 77.8
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 8.2e-247 857.1 564 75.7
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.1e-246 856.7 564 75.9
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 1.8e-246 855.9 568 76.8
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 3.1e-246 855.1 562 75.8
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 4.1e-246 854.7 567 77.6
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 4.1e-246 854.7 563 76.6
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 2.0e-245 852.4 563 76.9
Nitab4.5_0001070g0110 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.0e-244 850.1 583 73.8
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 1.7e-244 849.4 562 75.4
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 9.4e-243 843.6 566 76.9
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 4.6e-242 841.3 563 75.1
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 1.4e-241 839.7 561 74.9
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 2.5e-240 835.5 567 76.2
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 4.3e-240 834.7 566 76.5
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 4.3e-240 834.7 567 74.1
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 9.7e-240 833.6 566 76.3
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 1.4e-238 829.7 567 74.8
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.4e-238 828.9 566 75.6
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 2.0e-237 825.9 561 74.9
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 2.0e-237 825.9 561 74.5
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 2.6e-237 825.5 563 75.1
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 2.6e-237 825.5 560 74.8
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 1.7e-236 822.8 567 73.5
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 2.2e-236 822.4 567 73.4
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 2.9e-236 822.0 569 72.8
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 6.5e-236 820.8 564 75.0
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 1.1e-235 820.1 561 72.9
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 1.9e-235 819.3 562 73.0
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 1.9e-235 819.3 567 74.8
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 2.5e-235 818.9 568 72.7
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 3.2e-235 818.5 568 73.2
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 7.9e-234 813.9 562 72.8
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 3.9e-233 811.6 561 72.7
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 2.6e-232 808.9 567 72.5
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 2.2e-231 805.8 567 72.1
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 2.8e-231 805.4 562 72.4
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 2.8e-231 805.4 566 72.1
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 3.7e-231 805.1 561 73.4
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 5.3e-230 801.2 568 72.7
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 1.2e-229 800.0 557 74.5
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 2.6e-229 798.9 568 72.4
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 1.3e-228 796.6 570 71.6
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 2.2e-228 795.8 566 71.9
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 5.0e-228 794.7 572 71.3
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 5.0e-228 794.7 564 72.2
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 2.5e-227 792.3 562 70.8
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 3.2e-227 792.0 562 70.8
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 7.2e-227 790.8 562 71.2
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 2.1e-226 789.3 562 70.8
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 2.7e-226 788.9 562 70.6
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 1.0e-225 786.9 567 72.7
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 4.0e-225 785.0 560 71.4
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 6.7e-225 784.3 569 69.2
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 6.7e-225 784.3 562 71.5
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 8.8e-225 783.9 569 69.4
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 5.7e-224 781.2 569 70.8
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 1.3e-223 780.0 562 70.6
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 4.8e-223 778.1 567 72.1
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 1.4e-222 776.5 574 70.4
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 2.4e-222 775.8 559 71.4
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 4.1e-222 775.0 573 68.8
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 2.5e-219 765.8 563 69.3
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 1.6e-218 763.1 562 68.9
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 2.1e-218 762.7 562 69.0
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 1.8e-217 759.6 563 68.6
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 2.3e-217 759.2 562 68.7
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 4.0e-217 758.4 509 76.6
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 5.2e-217 758.1 563 70.2
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 4.4e-216 755.0 612 64.4
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.7e-215 753.1 658 63.2
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 3.1e-214 748.8 508 74.4
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.2e-213 746.9 566 70.0
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 3.2e-211 738.8 567 65.8
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 3.2e-211 738.8 567 65.8
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 9.5e-211 737.3 567 68.6
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 1.6e-210 736.5 562 67.3
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.4e-206 723.4 514 73.9
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 2.0e-205 719.5 562 66.4
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 5.9e-205 718.0 562 65.7
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 2.3e-204 716.1 568 66.2
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 2.0e-192 676.4 566 63.4
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 3.5e-189 665.6 568 63.0
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 2.3e-188 662.9 560 60.9
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 8.4e-175 617.8 568 58.3
Sc15g0007430 Simmondsia chinensis HOM05D003504 ORTHO05D004006 3.8e-167 592.4 426 71.8
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 2.1e-162 576.6 574 53.3
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 1.5e-160 570.5 572 54.7
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.8e-154 549.7 580 51.2
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.1e-153 546.2 587 49.6
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 4.5e-152 542.3 595 49.9
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 4.2e-150 535.8 589 49.4
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 1.2e-149 534.3 557 53.1
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 6.7e-148 528.5 564 48.6
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.5e-147 527.3 571 48.5
Ca_24186_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 1.9e-147 526.9 431 65.4
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 2.3e-140 503.4 552 48.7
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 1.8e-137 493.8 339 77.3
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 2.0e-128 463.8 337 72.4
Zm00001eb391790 Zea mays HOM05D003504 ORTHO05D004006 7.0e-113 412.1 482 49.0
Lj6C705G6 Lonicera japonica HOM05D003504 ORTHO05D004006 9.7e-107 391.7 337 61.1
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 1.0e-92 345.1 359 52.1
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 1.5e-70 271.6 227 63.9
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 2.1e-64 251.1 547 33.3
RcHm_v2.0_Chr5g0024291 Rosa chinensis HOM05D003504 ORTHO05D004006 8.1e-61 239.2 156 75.0
Ca_24185_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 5.2e-60 236.5 151 74.2
Zm00001eb110210 Zea mays HOM05D003504 ORTHO05D004006 8.4e-50 202.6 130 76.9
Zm00001eb113250 Zea mays HOM05D003504 ORTHO05D004006 2.5e-38 164.5 110 70.9
Zm00001eb145990 Zea mays HOM05D003504 ORTHO05D004006 1.7e-34 151.8 134 62.7
Zm00001eb389000 Zea mays HOM05D001423 ORTHO05D004006 1.2e-32 145.6 186 48.4
Zm00001eb265700 Zea mays HOM05D003504 ORTHO05D004006 2.7e-32 144.4 191 48.7
Psat0s1032g0040 Pisum sativum HOM05D003504 ORTHO05D004006 1.8e-31 141.7 92 72.8
Cpa.g.sc34.44 Carica papaya HOM05D003504 ORTHO05D004006 1.6e-29 135.2 133 63.2
SHI02263 Sapria himalayana HOM05D003504 ORTHO05D004006 6.3e-21 106.7 100 59.0
SHI02262 Sapria himalayana HOM05D003504 ORTHO05D004006 1.2e-19 102.4 84 59.5
CBR_g22316 Chara braunii HOM05D003504 ORTHO05D004006 1.7e-18 98.6 134 40.3
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 7.9e-16 89.7 77 62.3
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 2.3e-15 88.2 57 75.4
Zm00001eb412430 Zea mays HOM05D003504 ORTHO05D004006 3.0e-15 87.8 88 58.0
ClCG03G013860 Citrullus lanatus HOM05D003504 ORTHO05D004006 2.4e-12 78.2 74 55.4
Cpa.g.sc3151.1 Carica papaya HOM05D003504 ORTHO05D004006 5.3e-12 77.0 96 51.0
Zm00001eb292470 Zea mays HOM05D001423 ORTHO05D000709 4.5e-11 73.9 176 38.1
SEGI_08102 Sequoiadendron giganteum HOM05D017310 ORTHO05D004006 2.9e-10 71.2 79 48.1
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 2.9e-10 71.2 78 50.0
Zm00001eb016900 Zea mays HOM05D009386 ORTHO05D011419 5.0e-10 70.5 63 55.6
SHI02261 Sapria himalayana HOM05D003504 ORTHO05D004006 5.5e-09 67.0 84 39.3
SHI02260 Sapria himalayana HOM05D003504 ORTHO05D004006 2.1e-08 65.1 47 59.6
SEGI_26038 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 3.6e-08 64.3 55 58.2
SEGI_22890 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 8.8e-07 59.7 55 54.5


User provided reference genes

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