Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 1.2e-160 569.7 281 100.0
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 4.7e-160 567.8 281 99.6
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 7.2e-108 394.4 277 74.0
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 3.6e-99 365.5 274 70.1
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 2.0e-94 349.7 274 67.2
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 2.9e-93 345.9 276 65.6
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 3.2e-92 342.4 276 64.9
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 2.6e-89 332.8 275 65.8
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 8.8e-82 307.8 272 63.2
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 5.7e-81 305.1 271 61.3
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 7.5e-81 304.7 271 61.3
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 2.2e-80 303.1 274 61.7
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 3.5e-78 295.8 272 59.2
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 4.5e-78 295.4 275 60.4
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 3.8e-77 292.4 258 61.6
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 1.1e-76 290.8 274 58.8
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 2.1e-75 286.6 273 59.3
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 2.7e-75 286.2 272 58.8
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 3.6e-75 285.8 282 57.1
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 2.3e-74 283.1 274 59.9
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 2.0e-73 280.0 276 57.2
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 2.6e-73 279.6 290 60.3
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 1.3e-72 277.3 276 56.9
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.3e-72 277.3 209 63.6
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 2.2e-72 276.6 274 54.7
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 4.1e-71 272.3 274 55.8
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 5.4e-71 271.9 278 57.6
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 7.0e-71 271.6 275 59.3
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 7.0e-71 271.6 276 56.9
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 1.2e-70 270.8 181 72.4
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 1.6e-70 270.4 273 54.6
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 2.0e-70 270.0 271 56.8
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 2.7e-70 269.6 271 53.9
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 4.5e-70 268.9 278 57.9
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 5.9e-70 268.5 280 55.7
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 1.0e-69 267.7 183 74.9
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 2.9e-69 266.2 271 56.1
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 3.8e-69 265.8 274 57.3
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 5.0e-69 265.4 268 55.6
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 5.0e-69 265.4 277 55.2
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 8.6e-69 264.6 271 56.1
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.5e-68 263.8 272 55.1
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 9.5e-68 261.2 213 64.3
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 1.0e-66 257.7 272 51.8
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 1.8e-66 256.9 280 53.2
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 2.0e-65 253.4 272 54.4
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 2.6e-65 253.1 275 52.7
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 5.7e-65 251.9 174 69.5
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 4.9e-64 248.8 280 53.2
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 8.3e-64 248.1 179 69.8
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 8.3e-64 248.1 189 67.2
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 1.1e-63 247.7 206 62.6
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 1.8e-63 246.9 188 66.5
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 4.5e-62 242.3 250 56.4
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 4.5e-62 242.3 250 56.4
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 5.9e-62 241.9 226 57.5
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 1.0e-61 241.1 190 64.7
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 2.9e-61 239.6 171 69.0
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 3.8e-61 239.2 275 51.3
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 1.9e-60 236.9 180 66.7
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 2.5e-60 236.5 274 51.1
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 7.3e-60 235.0 283 49.1
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.2e-59 234.2 235 56.2
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 1.6e-59 233.8 278 50.7
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 1.6e-59 233.8 204 60.3
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 2.1e-59 233.4 274 50.0
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 2.8e-59 233.0 173 68.2
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 3.6e-59 232.6 154 72.7
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 3.6e-59 232.6 185 65.9
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 8.0e-59 231.5 194 63.4
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 8.0e-59 231.5 208 58.7
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 1.0e-58 231.1 273 50.9
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.4e-58 230.7 155 72.3
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.8e-58 230.3 185 64.9
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 3.0e-58 229.6 154 73.4
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 4.0e-58 229.2 185 62.7
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 6.8e-58 228.4 171 67.8
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 1.5e-57 227.3 275 50.5
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 1.5e-57 227.3 191 61.3
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 3.4e-57 226.1 273 49.8
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 5.7e-57 225.3 190 59.5
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 9.8e-57 224.6 219 56.6
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 1.3e-56 224.2 272 48.9
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 1.3e-56 224.2 135 76.3
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 1.7e-56 223.8 273 48.7
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 2.2e-56 223.4 273 48.4
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 2.2e-56 223.4 270 48.9
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 2.9e-56 223.0 273 48.0
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 2.7e-54 216.5 151 69.5
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 6.0e-54 215.3 274 48.9
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 1.7e-53 213.8 169 63.9
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 2.3e-53 213.4 206 54.9
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 6.6e-53 211.8 206 54.4
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 9.5e-52 208.0 230 52.2
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.1e-50 204.5 346 39.6
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 4.4e-49 199.1 222 51.8
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 4.4e-49 199.1 271 47.2
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 1.1e-47 194.5 185 53.0
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 6.2e-43 178.7 223 50.2
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 2.4e-39 166.8 231 47.2
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 3.2e-39 166.4 185 48.6
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 2.7e-38 163.3 146 54.1
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 7.8e-38 161.8 138 56.5
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 6.6e-37 158.7 195 43.6
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 1.2e-33 147.9 132 53.0
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.2e-33 147.9 137 49.6
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.0e-29 134.8 137 46.7
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 6.9e-26 122.1 104 62.5
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 3.8e-24 116.3 149 52.3
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.1e-23 114.8 133 38.3
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 2.0e-17 94.0 50 80.0
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 5.8e-17 92.4 139 36.0
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 3.8e-16 89.7 125 36.8
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 3.2e-15 86.7 50 72.0
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.0e-09 67.4 35 80.0
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 2.0e-09 67.4 34 79.4


User provided reference genes

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