Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042924 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 4.8e-41 170.6 81 100.0
CSS0046460 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 3.2e-37 157.9 81 92.6
CSS0003480 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 2.3e-27 125.2 63 92.1
CSS0034310 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 2.3e-27 125.2 63 92.1
CSS0006143 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 2.0e-26 122.1 63 90.5
CSS0021522 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 2.0e-26 122.1 63 90.5
MSTRG.18133 Avicennia marina HOM05D003197 ORTHO05D003769 1.9e-21 105.5 66 78.8
CSS0002671 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 1.9e-21 105.5 66 78.8
CSS0038182 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 1.9e-21 105.5 66 78.8
Oeu008339.1 Olea europaea HOM05D003197 ORTHO05D003769 2.5e-21 105.1 66 77.3
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 4.3e-21 104.4 66 77.3
Rhsim06G0161500 Rhododendron simsii HOM05D003197 ORTHO05D003769 4.3e-21 104.4 66 77.3
Rhsim07G0104500 Rhododendron simsii HOM05D003197 ORTHO05D003769 4.3e-21 104.4 66 77.3
Hund05454 Selenicereus undatus HOM05D003197 ORTHO05D003769 4.3e-21 104.4 66 77.3
Solyc06g009820.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 4.3e-21 104.4 66 75.8
TWI23G1200 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 4.3e-21 104.4 66 77.3
CAN.G1280.13 Capsicum annuum HOM05D003197 ORTHO05D003769 5.6e-21 104.0 66 75.8
Manes.01G223200 Manihot esculenta HOM05D003197 ORTHO05D003769 5.6e-21 104.0 66 75.8
SGA_v2.0_scaffold334G49028 Striga asiatica HOM05D003197 ORTHO05D003769 5.6e-21 104.0 66 77.3
GSVIVG01031185001 Vitis vinifera HOM05D003197 ORTHO05D003769 5.6e-21 104.0 66 75.8
Ca_10314_v3 Cicer arietinum L. HOM05D003197 ORTHO05D003769 7.3e-21 103.6 66 75.8
ClCG10G011140 Citrullus lanatus HOM05D003197 ORTHO05D003769 7.3e-21 103.6 66 75.8
MELO3C017938.2 Cucumis melo HOM05D003197 ORTHO05D003769 7.3e-21 103.6 66 75.8
Lj5A370G55 Lonicera japonica HOM05D003197 ORTHO05D003769 7.3e-21 103.6 66 75.8
TPR.G33977 Trifolium pratense HOM05D003197 ORTHO05D003769 7.3e-21 103.6 66 75.8
Aa31LG1G28820 Aethionema arabicum HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
AT2G47510 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
BcaB02g08764 Brassica carinata HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
BcaC02g12803 Brassica carinata HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
C04p00340 Brassica napus HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
C04p00370 Brassica napus HOM05D003197 ORTHO05D000780 9.5e-21 103.2 66 75.8
BolC4t21676H Brassica oleracea HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
BolC4t21682H Brassica oleracea HOM05D003197 ORTHO05D000780 9.5e-21 103.2 66 75.8
CANSAT80G1297 Cannabis sativa HOM05D003197 ORTHO05D003769 9.5e-21 103.2 50 96.0
Carub.0004s3025 Capsella rubella HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
CARHR142910 Cardamine hirsuta HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
Cfa005865 Carpinus fangiana HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
Ciclev10019838m.g Citrus clementina HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
Haze_04982 Corylus avellana HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
Migut.D00123 Erythranthe guttata HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
Thhalv10001422m.g Eutrema salsugineum HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
Gohir.D07G130500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
Lsat_1_v5_gn_8_164740 Lactuca sativa HOM05D003197 ORTHO05D003769 9.5e-21 103.2 50 96.0
Manes.03G058700 Manihot esculenta HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
Rhsim06G0161700 Rhododendron simsii HOM05D003197 ORTHO05D003769 9.5e-21 103.2 50 96.0
Rhsim13G0008000 Rhododendron simsii HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
Sp4g29450 Schrenkiella parvula HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
Sed0011546 Sechium edule HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 74.2
SGA_v2.0_scaffold2G01379 Striga asiatica HOM05D003197 ORTHO05D003769 9.5e-21 103.2 50 96.0
THA.LOC104802185 Tarenaya hassleriana HOM05D003197 ORTHO05D003769 9.5e-21 103.2 66 75.8
TWI59G0305 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 9.5e-21 103.2 50 96.0
Actinidia21429 Actinidia chinensis HOM05D003197 ORTHO05D003769 1.2e-20 102.8 50 94.0
arahy.Tifrunner.gnm1.ann1.5H6FCE Arachis hypogaea HOM05D003197 ORTHO05D003769 1.2e-20 102.8 66 74.2
arahy.Tifrunner.gnm1.ann1.BU45MS Arachis hypogaea HOM05D003197 ORTHO05D003769 1.2e-20 102.8 66 74.2
Eucgr.H01081 Eucalyptus grandis HOM05D003197 ORTHO05D003769 1.2e-20 102.8 66 74.2
Lalb_Chr02g0146551 Lupinus albus HOM05D003197 ORTHO05D003769 1.2e-20 102.8 50 94.0
Nn3g21574 Nelumbo nucifera HOM05D003197 ORTHO05D003769 1.2e-20 102.8 66 74.2
Nn4g25715 Nelumbo nucifera HOM05D003197 ORTHO05D003769 1.2e-20 102.8 66 74.2
Phvul.007G217600 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 1.2e-20 102.8 66 74.2
GSVIVG01028056001 Vitis vinifera HOM05D003197 ORTHO05D003769 1.2e-20 102.8 66 74.2
Lalb_Chr21g0309351 Lupinus albus HOM05D003197 ORTHO05D003769 1.6e-20 102.4 66 72.7
TAR365G0397 Trochodendron aralioides HOM05D003197 ORTHO05D003769 1.6e-20 102.4 66 74.2
Atru.chr6.1651 Acer truncatum HOM05D003197 ORTHO05D003769 2.1e-20 102.1 50 94.0
BcaB06g29441 Brassica carinata HOM05D003197 ORTHO05D003769 2.1e-20 102.1 66 74.2
A05p00410 Brassica napus HOM05D003197 ORTHO05D003769 2.1e-20 102.1 66 74.2
CiPaw.07G112700 Carya illinoinensis HOM05D003197 ORTHO05D003769 2.1e-20 102.1 50 94.0
COL.COLO4_23299 Corchorus olitorius HOM05D003197 ORTHO05D003769 2.1e-20 102.1 66 74.2
Duzib138G1374 Durio zibethinus HOM05D003197 ORTHO05D003769 2.1e-20 102.1 50 94.0
Gohir.A07G126400 Gossypium hirsutum HOM05D003197 ORTHO05D003769 2.1e-20 102.1 66 74.2
Gorai.001G141300 Gossypium raimondii HOM05D003197 ORTHO05D003769 2.1e-20 102.1 50 94.0
HanXRQChr06g0167721 Helianthus annuus HOM05D003197 ORTHO05D003769 2.1e-20 102.1 50 94.0
Psat6g163680 Pisum sativum HOM05D003197 ORTHO05D003769 2.1e-20 102.1 66 72.7
ATR0796G113 Amborella trichopoda HOM05D003197 ORTHO05D003769 2.8e-20 101.7 66 72.7
AL4G47080 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 2.8e-20 101.7 66 74.2
Carub.0008s1096 Capsella rubella HOM05D003197 ORTHO05D003769 2.8e-20 101.7 66 74.2
Cpa.g.sc151.34 Carica papaya HOM05D003197 ORTHO05D003769 2.8e-20 101.7 66 74.2
AUR62008718 Chenopodium quinoa HOM05D003197 ORTHO05D003769 2.8e-20 101.7 65 75.4
AUR62025515 Chenopodium quinoa HOM05D003197 ORTHO05D003769 2.8e-20 101.7 65 75.4
CsaV3_4G001010 Cucumis sativus L. HOM05D003197 ORTHO05D003769 2.8e-20 101.7 65 75.4
Glyma.02G015700 Glycine max HOM05D003197 ORTHO05D003769 2.8e-20 101.7 50 92.0
HanXRQChr04g0114721 Helianthus annuus HOM05D003197 ORTHO05D003769 2.8e-20 101.7 50 92.0
PGR119G1313 Punica granatum HOM05D003197 ORTHO05D003769 2.8e-20 101.7 66 72.7
Cpa.g.sc27.118 Carica papaya HOM05D003197 ORTHO05D003769 3.6e-20 101.3 66 74.2
Dinv33079 Davidia involucrata HOM05D003197 ORTHO05D003769 3.6e-20 101.3 66 74.2
Glyma.02G015800 Glycine max HOM05D003197 ORTHO05D003769 3.6e-20 101.3 66 72.7
Manes.05G000300 Manihot esculenta HOM05D003197 ORTHO05D003769 3.6e-20 101.3 66 74.2
Sabra02G0157600 Salix brachista HOM05D003197 ORTHO05D003769 3.6e-20 101.3 66 74.2
Duzib211G0223 Durio zibethinus HOM05D003197 ORTHO05D003769 4.7e-20 100.9 66 74.2
ECA236G1793 Erigeron canadensis HOM05D003197 ORTHO05D003769 4.7e-20 100.9 50 92.0
MD00G1140200 Malus domestica HOM05D003197 ORTHO05D003769 4.7e-20 100.9 66 71.2
Prupe.8G265300 Prunus persica HOM05D003197 ORTHO05D003769 4.7e-20 100.9 66 74.2
Hund12826 Selenicereus undatus HOM05D003197 ORTHO05D003769 4.7e-20 100.9 66 74.2
Thecc.01G306500 Theobroma cacao HOM05D003197 ORTHO05D003769 4.7e-20 100.9 50 92.0
TAR636G2764 Trochodendron aralioides HOM05D003197 ORTHO05D003769 4.7e-20 100.9 50 92.0
Lj5g0001576 Lotus japonicus HOM05D003197 ORTHO05D003769 6.2e-20 100.5 66 72.7
CARHR257280 Cardamine hirsuta HOM05D003197 ORTHO05D003769 8.0e-20 100.1 66 72.7
CDE12G0403 Ceratophyllum demersum HOM05D003197 ORTHO05D003769 8.0e-20 100.1 66 71.2
Eucgr.H01083 Eucalyptus grandis HOM05D003197 ORTHO05D003769 8.0e-20 100.1 66 72.7
Gohir.A08G041500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 8.0e-20 100.1 50 94.0
Gohir.D08G051600 Gossypium hirsutum HOM05D003197 ORTHO05D003769 8.0e-20 100.1 50 94.0
AL8G25140 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 1.1e-19 99.8 66 72.7
AT5G50950 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 1.1e-19 99.8 66 72.7
EL10Ac6g15230 Beta vulgaris HOM05D003197 ORTHO05D003769 1.1e-19 99.8 50 90.0
Nitab4.5_0009662g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 1.1e-19 99.8 75 70.7
QL12p027709 Quercus lobata HOM05D003197 ORTHO05D003769 1.1e-19 99.8 66 72.7
SalBow6G6079 Salvia bowleyana HOM05D003197 ORTHO05D003769 1.1e-19 99.8 66 74.2
VMungo0720G0285 Vigna mungo HOM05D003197 ORTHO05D003769 1.1e-19 99.8 66 71.2
BolC4t28767H Brassica oleracea HOM05D003197 ORTHO05D003769 1.4e-19 99.4 66 72.7
CBR_g26174 Chara braunii HOM05D003197 ORTHO05D003769 1.4e-19 99.4 65 70.8
Os03g0337900 Oryza sativa ssp. japonica HOM05D003197 ORTHO05D003769 1.4e-19 99.4 66 71.2
Potri.002G201300 Populus trichocarpa HOM05D003197 ORTHO05D003769 1.4e-19 99.4 66 72.7
unitig_22.g5232 Utricularia gibba HOM05D003197 ORTHO05D003769 1.4e-19 99.4 66 71.2
Gorai.004G051500 Gossypium raimondii HOM05D003197 ORTHO05D003769 1.8e-19 99.0 50 92.0
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.8e-19 99.0 50 88.0
MD03G1292300 Malus domestica HOM05D003197 ORTHO05D003769 1.8e-19 99.0 66 71.2
RcHm_v2.0_Chr6g0294521 Rosa chinensis HOM05D003197 ORTHO05D003769 1.8e-19 99.0 66 74.2
Sc05g0003520 Simmondsia chinensis HOM05D003197 ORTHO05D003769 1.8e-19 99.0 66 72.7
VMungo0720G1283 Vigna mungo HOM05D003197 ORTHO05D003769 1.8e-19 99.0 50 88.0
Cc01_g21120 Coffea canephora HOM05D003197 ORTHO05D003769 2.3e-19 98.6 50 92.0
Phvul.007G217700 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 2.3e-19 98.6 66 69.7
Medtr1g087900 Medicago truncatula HOM05D003197 ORTHO05D003769 3.1e-19 98.2 66 71.2
HPP92_013736 Vanilla planifolia HOM05D003197 ORTHO05D003769 3.1e-19 98.2 65 70.8
Ah.08g213570 Amaranthus hybridus HOM05D003197 ORTHO05D003769 4.0e-19 97.8 50 90.0
Aqoxy2G02869 Aquilegia oxysepala HOM05D003197 ORTHO05D003769 4.0e-19 97.8 66 69.7
Carub.0008s1097 Capsella rubella HOM05D003197 ORTHO05D003769 4.0e-19 97.8 66 69.7
CAN.G862.60 Capsicum annuum HOM05D003197 ORTHO05D003769 4.0e-19 97.8 50 90.0
FvH4_2g26121 Fragaria vesca HOM05D003197 ORTHO05D003769 4.0e-19 97.8 66 72.7
FvH4_2g26140 Fragaria vesca HOM05D003197 ORTHO05D003769 4.0e-19 97.8 50 92.0
FAN24G1606 Fragaria x ananassa HOM05D003197 ORTHO05D003769 4.0e-19 97.8 50 92.0
HanXRQChr06g0177421 Helianthus annuus HOM05D003197 ORTHO05D003769 4.0e-19 97.8 50 88.0
Peaxi162Scf00362g01196 Petunia axillaris HOM05D003197 ORTHO05D003769 4.0e-19 97.8 50 90.0
Solyc09g075450.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 4.0e-19 97.8 50 90.0
Sopen09g030240 Solanum pennellii HOM05D003197 ORTHO05D003769 4.0e-19 97.8 50 90.0
BcaC02g06979 Brassica carinata HOM05D003197 ORTHO05D003769 5.2e-19 97.4 66 71.2
C04p72860 Brassica napus HOM05D003197 ORTHO05D003769 5.2e-19 97.4 66 71.2
Glyma.10G016200 Glycine max HOM05D003197 ORTHO05D003769 5.2e-19 97.4 50 88.0
Hma1.2p1_0494F.1_g165490 Hydrangea macrophylla HOM05D003197 ORTHO05D003769 5.2e-19 97.4 66 72.7
PSO731G0008 Papaver somniferum HOM05D003197 ORTHO05D003769 5.2e-19 97.4 66 68.2
PSO764G0236 Papaver somniferum HOM05D003197 ORTHO05D003769 5.2e-19 97.4 66 68.2
Zm00001eb016240 Zea mays HOM05D003197 ORTHO05D003769 5.2e-19 97.4 66 68.2
Nitab4.5_0007413g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 8.9e-19 96.7 50 90.0
RcHm_v2.0_Chr6g0294511 Rosa chinensis HOM05D003197 ORTHO05D003769 8.9e-19 96.7 66 71.2
Atru.chr5.1084 Acer truncatum HOM05D003197 ORTHO05D003769 1.2e-18 96.3 50 88.0
CDE01G0127 Ceratophyllum demersum HOM05D003197 ORTHO05D003769 1.2e-18 96.3 64 70.3
CiPaw.08G092800 Carya illinoinensis HOM05D003197 ORTHO05D003769 1.5e-18 95.9 66 71.2
Zm00001eb308640 Zea mays HOM05D003295 ORTHO05D003769 2.6e-18 95.1 68 64.7
DCAR_006747 Daucus carota HOM05D003197 ORTHO05D003769 3.4e-18 94.7 52 82.7
Peaxi162Scf00001g00341 Petunia axillaris HOM05D003197 ORTHO05D003769 5.8e-18 94.0 48 89.6
Mapoly0045s0064 Marchantia polymorpha HOM05D003197 ORTHO05D003769 1.7e-17 92.4 50 84.0
BNapus_Darmor_BZH_scaffold_122p00230 Brassica napus HOM05D003197 ORTHO05D003769 6.4e-17 90.5 66 69.7
Lj2g0021265 Lotus japonicus HOM05D003197 ORTHO05D003769 1.4e-16 89.4 48 85.4
SHI31149 Sapria himalayana HOM05D003197 ORTHO05D003769 1.4e-16 89.4 52 78.8
Zm00001eb165980 Zea mays HOM05D003197 ORTHO05D003769 1.4e-16 89.4 48 81.2
Pp3c23_19500 Physcomitrium patens HOM05D003197 ORTHO05D003769 2.4e-16 88.6 65 64.6
Cfa027230 Carpinus fangiana HOM05D003197 ORTHO05D003769 3.2e-16 88.2 65 66.2
Pp3c20_7140 Physcomitrium patens HOM05D003197 ORTHO05D003769 4.1e-16 87.8 65 64.6
AagrBONN_evm.TU.Sc2ySwM_228.3677 Anthoceros agrestis HOM05D003197 ORTHO05D003769 1.6e-15 85.9 66 65.2
AagrBONN_evm.TU.Sc2ySwM_344.987 Anthoceros agrestis HOM05D003197 ORTHO05D003769 6.0e-15 84.0 50 78.0
PRCOL_00002149 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 1.7e-14 82.4 64 59.4
SMO197G0092 Selaginella moellendorffii HOM05D003197 ORTHO05D003769 9.5e-13 76.6 66 57.6
MD01G1075600 Malus domestica HOM05D003197 ORTHO05D003769 2.8e-12 75.1 51 70.6
Cre01.g020223 Chlamydomonas reinhardtii HOM05D003197 ORTHO05D003769 8.1e-12 73.6 51 66.7
Nitab4.5_0000116g0300 Nicotiana tabacum HOM05D003197 ORTHO05D003769 2.6e-10 68.6 35 91.4
Haze_27310 Corylus avellana HOM05D003197 ORTHO05D003769 3.4e-10 68.2 66 53.0
BNapus_Darmor_BZH_scaffold_99p00260 Brassica napus HOM05D003197 ORTHO05D003769 4.4e-10 67.8 33 93.9
PRCOL_00000918 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 5.8e-10 67.4 59 55.9
MCO15G383 Micromonas commoda HOM05D003197 ORTHO05D003769 7.5e-10 67.0 59 55.9
Nitab4.5_0000803g0020 Nicotiana tabacum HOM05D003197 ORTHO05D003769 2.9e-09 65.1 35 88.6
FAN27G3019 Fragaria x ananassa HOM05D003197 ORTHO05D003769 4.1e-08 61.2 35 88.6
Oeu017666.1 Olea europaea HOM05D003197 ORTHO05D003769 4.1e-08 61.2 31 90.3


User provided reference genes

Program Settings