Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042789 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D015842 8.4e-52 206.8 111 100.0
Actinidia08843 Actinidia chinensis HOM05D000068 ORTHO05D000084 4.8e-31 137.9 109 68.8
Dinv38497 Davidia involucrata HOM05D000068 ORTHO05D000084 2.1e-26 122.5 106 67.0
Lj5C101T9 Lonicera japonica HOM05D000068 ORTHO05D000084 2.4e-22 109.0 104 63.5
ECA247G1694 Erigeron canadensis HOM05D000068 ORTHO05D000084 6.7e-17 90.9 103 49.5
GSVIVG01007586001 Vitis vinifera HOM05D000068 ORTHO05D000084 5.7e-16 87.8 77 62.3
Duzib168G0683 Durio zibethinus HOM05D000068 ORTHO05D000084 7.4e-16 87.4 77 62.3
Atru.chr7.947 Acer truncatum HOM05D000068 ORTHO05D000084 1.4e-14 83.2 77 62.3
Cc04_g10800 Coffea canephora HOM05D000068 ORTHO05D000084 1.4e-14 83.2 98 54.1
Aqoxy5G03642 Aquilegia oxysepala HOM05D000068 ORTHO05D011548 1.8e-14 82.8 108 49.1
Potri.006G074400 Populus trichocarpa HOM05D000068 ORTHO05D000084 1.5e-13 79.7 93 50.5
Lsat_1_v5_gn_4_78421 Lactuca sativa HOM05D000068 ORTHO05D000084 4.5e-13 78.2 77 50.6
Dinv14750 Davidia involucrata HOM05D000068 ORTHO05D000084 5.9e-13 77.8 101 44.6
Potri.006G074101 Populus trichocarpa HOM05D000068 ORTHO05D000084 1.3e-12 76.6 109 45.0
Sabra06G0055400 Salix brachista HOM05D000068 ORTHO05D000084 2.9e-12 75.5 77 55.8
HanXRQChr09g0272491 Helianthus annuus HOM05D000068 ORTHO05D000084 3.8e-12 75.1 91 46.2
Hma1.2p1_0079F.1_g041200 Hydrangea macrophylla HOM05D000068 ORTHO05D000084 1.4e-11 73.2 78 50.0
HanXRQChr02g0035351 Helianthus annuus HOM05D000068 ORTHO05D000084 5.5e-11 71.2 77 48.1
Potri.018G141400 Populus trichocarpa HOM05D000068 ORTHO05D000084 2.1e-10 69.3 102 47.1
Eucgr.C02210 Eucalyptus grandis HOM05D000068 ORTHO05D000084 6.1e-10 67.8 60 63.3
Aqoxy3G01298 Aquilegia oxysepala HOM05D000068 ORTHO05D000084 1.8e-09 66.2 79 49.4
GSVIVG01014625001 Vitis vinifera HOM05D000068 ORTHO05D000084 3.0e-09 65.5 79 40.5
ATR0824G189 Amborella trichopoda HOM05D000068 ORTHO05D015842 3.9e-09 65.1 73 49.3
Lj6A816T59 Lonicera japonica HOM05D000068 ORTHO05D000084 1.1e-08 63.5 77 45.5
Cfa009256 Carpinus fangiana HOM05D000068 ORTHO05D000084 5.7e-08 61.2 75 42.7
SalBow2G3624 Salvia bowleyana HOM05D000068 ORTHO05D000084 7.4e-08 60.8 79 41.8
PGSC0003DMG400010774 Solanum tuberosum HOM05D000068 ORTHO05D000084 9.7e-08 60.5 83 39.8
MBI06_g04129_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D000084 1.3e-07 60.1 77 42.9
Solyc07g018130.2 Solanum lycopersicum HOM05D000068 ORTHO05D000084 1.3e-07 60.1 79 38.0
ECA238G2224 Erigeron canadensis HOM05D000068 ORTHO05D000084 1.7e-07 59.7 81 39.5
FvH4_7g09951 Fragaria vesca HOM05D000068 ORTHO05D015842 1.7e-07 59.7 76 43.4
FAN24G0378 Fragaria x ananassa HOM05D049261 ORTHO05D015842 1.7e-07 59.7 70 47.1
Nitab4.5_0000041g0040 Nicotiana tabacum HOM05D000068 ORTHO05D000084 1.7e-07 59.7 80 38.8
Peaxi162Scf00128g00552 Petunia axillaris HOM05D000068 ORTHO05D000084 1.7e-07 59.7 82 40.2
Sed0024482 Sechium edule HOM05D000068 ORTHO05D000084 1.7e-07 59.7 74 43.2
ECA232G4511 Erigeron canadensis HOM05D000068 ORTHO05D000084 2.2e-07 59.3 98 36.7
TWI38G1718 Tripterygium wilfordii HOM05D000068 ORTHO05D000084 2.2e-07 59.3 80 41.2
Actinidia36051 Actinidia chinensis HOM05D000068 ORTHO05D000084 2.8e-07 58.9 82 43.9
Cc05_g13260 Coffea canephora HOM05D000068 ORTHO05D000084 2.8e-07 58.9 79 40.5
FvH4_4g25260 Fragaria vesca HOM05D000068 ORTHO05D000084 2.8e-07 58.9 79 40.5
FAN12G1319 Fragaria x ananassa HOM05D000068 ORTHO05D000084 2.8e-07 58.9 79 40.5
FAN17G2790 Fragaria x ananassa HOM05D000068 ORTHO05D000084 2.8e-07 58.9 79 40.5
MD16G1105600 Malus domestica HOM05D000068 ORTHO05D000084 2.8e-07 58.9 79 40.5
PGSC0003DMG400005483 Solanum tuberosum HOM05D000068 ORTHO05D000084 2.8e-07 58.9 79 38.0
CANSAT01G0625 Cannabis sativa HOM05D000068 ORTHO05D000084 3.7e-07 58.5 73 43.8
Sopen05g008830 Solanum pennellii HOM05D000002 ORTHO05D000001 3.7e-07 58.5 83 38.6
PSO675G6742 Papaver somniferum HOM05D000068 ORTHO05D000084 4.8e-07 58.2 80 37.5
Haze_09615 Corylus avellana HOM05D000068 ORTHO05D000084 6.3e-07 57.8 75 41.3
MELO3C018106.2 Cucumis melo HOM05D000068 ORTHO05D000084 6.3e-07 57.8 75 40.0
DCAR_008268 Daucus carota HOM05D000068 ORTHO05D000084 8.2e-07 57.4 77 40.3
Thhalv10011187m.g Eutrema salsugineum HOM05D000068 ORTHO05D000084 8.2e-07 57.4 101 39.6
FAN06G1198 Fragaria x ananassa HOM05D000001 ORTHO05D009896 8.2e-07 57.4 107 39.3
Lsat_1_v5_gn_1_28620 Lactuca sativa HOM05D000068 ORTHO05D000084 8.2e-07 57.4 76 47.4
Lalb_Chr19g0134761 Lupinus albus HOM05D000068 ORTHO05D000084 8.2e-07 57.4 74 43.2
FAN06G0426 Fragaria x ananassa HOM05D000068 ORTHO05D015842 1.1e-06 57.0 107 39.3
Lsat_1_v5_gn_2_90660 Lactuca sativa HOM05D000068 ORTHO05D000084 1.1e-06 57.0 81 40.7
HanXRQChr07g0199271 Helianthus annuus HOM05D000068 ORTHO05D000084 1.4e-06 56.6 84 39.3
Lj3g0020583 Lotus japonicus HOM05D000068 ORTHO05D000084 1.4e-06 56.6 74 41.9
Glyma.12G135300 Glycine max HOM05D000068 ORTHO05D000084 1.8e-06 56.2 74 39.2
Gohir.A05G362500 Gossypium hirsutum HOM05D000068 ORTHO05D000084 1.8e-06 56.2 81 39.5
CSS0036338 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D000084 2.4e-06 55.8 81 39.5
Duzib147G0037 Durio zibethinus HOM05D000068 ORTHO05D000084 2.4e-06 55.8 81 42.0
Prupe.4G204300 Prunus persica HOM05D000068 ORTHO05D000084 2.4e-06 55.8 77 39.0
Sed0001109 Sechium edule HOM05D000068 ORTHO05D000084 2.4e-06 55.8 75 37.3
VMungo1383G1462 Vigna mungo HOM05D000068 ORTHO05D000084 2.4e-06 55.8 80 40.0
CsaV3_5G030760 Cucumis sativus L. HOM05D000068 ORTHO05D000084 3.1e-06 55.5 80 41.2
Duzib251G0791 Durio zibethinus HOM05D000068 ORTHO05D000084 3.1e-06 55.5 73 39.7
Peaxi162Scf00231g00916 Petunia axillaris HOM05D000068 ORTHO05D000084 3.1e-06 55.5 79 38.0
Peaxi162Scf01086g00139 Petunia axillaris HOM05D000068 ORTHO05D000084 3.1e-06 55.5 73 42.5
RcHm_v2.0_Chr4g0432501 Rosa chinensis HOM05D000068 ORTHO05D000084 3.1e-06 55.5 79 39.2
TPR.G29231 Trifolium pratense HOM05D000068 ORTHO05D000084 3.1e-06 55.5 81 40.7
Aqoxy5G03646 Aquilegia oxysepala HOM05D000068 ORTHO05D000084 4.1e-06 55.1 77 37.7
arahy.Tifrunner.gnm1.ann1.ZNTD33 Arachis hypogaea HOM05D000068 ORTHO05D000084 4.1e-06 55.1 91 34.1
Cpa.g.sc14.71 Carica papaya HOM05D000068 ORTHO05D000084 4.1e-06 55.1 81 43.2
COL.COLO4_37004 Corchorus olitorius HOM05D000068 ORTHO05D000084 4.1e-06 55.1 82 39.0
CsaV3_3G023110 Cucumis sativus L. HOM05D000068 ORTHO05D000084 4.1e-06 55.1 75 37.3
Duzib268G1280 Durio zibethinus HOM05D000068 ORTHO05D000084 4.1e-06 55.1 73 42.5
Migut.H01855 Erythranthe guttata HOM05D000068 ORTHO05D000084 4.1e-06 55.1 79 39.2
FAN16G0260 Fragaria x ananassa HOM05D000068 ORTHO05D000084 4.1e-06 55.1 79 36.7
FAN25G0393 Fragaria x ananassa HOM05D000068 ORTHO05D000084 4.1e-06 55.1 79 36.7
Glyma.18G012700 Glycine max HOM05D000068 ORTHO05D000084 4.1e-06 55.1 80 41.2
PGSC0003DMG400001400 Solanum tuberosum HOM05D000068 ORTHO05D000084 4.1e-06 55.1 95 35.8
Thecc.07G052200 Theobroma cacao HOM05D000068 ORTHO05D000084 4.1e-06 55.1 73 42.5
ClCG05G026090 Citrullus lanatus HOM05D000068 ORTHO05D000084 5.3e-06 54.7 73 38.4
COL.COLO4_23523 Corchorus olitorius HOM05D000068 ORTHO05D000084 5.3e-06 54.7 73 38.4
Prupe.1G241000 Prunus persica HOM05D000068 ORTHO05D000084 5.3e-06 54.7 81 37.0
Aa31sc1744G20 Aethionema arabicum HOM05D000068 ORTHO05D000084 6.9e-06 54.3 83 42.2
arahy.Tifrunner.gnm1.ann1.ILJA33 Arachis hypogaea HOM05D000068 ORTHO05D000084 6.9e-06 54.3 80 36.2
arahy.Tifrunner.gnm1.ann1.NH6DY5 Arachis hypogaea HOM05D000068 ORTHO05D000084 6.9e-06 54.3 74 41.9
Eucgr.I01889 Eucalyptus grandis HOM05D000068 ORTHO05D000084 6.9e-06 54.3 83 41.0
Potri.011G133800 Populus trichocarpa HOM05D000068 ORTHO05D000084 6.9e-06 54.3 79 36.7
Ciclev10010256m.g Citrus clementina HOM05D000068 ORTHO05D000084 9.1e-06 53.9 80 38.8
Hma1.2p1_0375F.1_g138930 Hydrangea macrophylla HOM05D000068 ORTHO05D000084 9.1e-06 53.9 88 40.9
SalBow8G1630 Salvia bowleyana HOM05D000068 ORTHO05D000084 9.1e-06 53.9 73 39.7
TWI36G0338 Tripterygium wilfordii HOM05D000068 ORTHO05D000084 9.1e-06 53.9 79 38.0


User provided reference genes

Program Settings