Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042696 Camellia sinensis var. sinensis HOM05D005735 ORTHO05D006547 3.3e-62 241.5 119 100.0
Eucgr.B02718 Eucalyptus grandis HOM05D005735 ORTHO05D006547 4.9e-58 227.6 118 93.2
Actinidia29177 Actinidia chinensis HOM05D005735 ORTHO05D006547 4.2e-57 224.6 118 91.5
GSVIVG01034092001 Vitis vinifera HOM05D005735 ORTHO05D006547 5.4e-57 224.2 118 90.7
CsaV3_4G025430 Cucumis sativus L. HOM05D005735 ORTHO05D006547 7.1e-57 223.8 118 89.8
Lj3g0007667 Lotus japonicus HOM05D005735 ORTHO05D006547 7.1e-57 223.8 118 89.8
Dinv35555 Davidia involucrata HOM05D005735 ORTHO05D006547 1.2e-56 223.0 118 91.5
MELO3C003165.2 Cucumis melo HOM05D005735 ORTHO05D006547 2.1e-56 222.2 118 89.0
Dinv37132 Davidia involucrata HOM05D005735 ORTHO05D006547 2.1e-56 222.2 118 89.0
Actinidia13829 Actinidia chinensis HOM05D005735 ORTHO05D006547 3.5e-56 221.5 118 90.7
ECA236G4371 Erigeron canadensis HOM05D005735 ORTHO05D006547 4.6e-56 221.1 118 89.0
MD04G1136300 Malus domestica HOM05D005735 ORTHO05D006547 4.6e-56 221.1 118 88.1
PGR031G0186 Punica granatum HOM05D005735 ORTHO05D006547 4.6e-56 221.1 118 89.0
arahy.Tifrunner.gnm1.ann1.879M1U Arachis hypogaea HOM05D005735 ORTHO05D006547 6.0e-56 220.7 118 88.1
arahy.Tifrunner.gnm1.ann1.ECZP7J Arachis hypogaea HOM05D005735 ORTHO05D006547 6.0e-56 220.7 118 88.1
CSS0004316 Camellia sinensis var. sinensis HOM05D005735 ORTHO05D006547 7.8e-56 220.3 118 89.8
Cfa017317 Carpinus fangiana HOM05D005735 ORTHO05D006547 7.8e-56 220.3 118 89.0
Glyma.03G069600 Glycine max HOM05D005735 ORTHO05D006547 7.8e-56 220.3 118 88.1
PGSC0003DMG400008888 Solanum tuberosum HOM05D005735 ORTHO05D006547 7.8e-56 220.3 119 88.2
HanXRQChr06g0177411 Helianthus annuus HOM05D005735 ORTHO05D006547 1.0e-55 219.9 118 88.1
Solyc09g011300.3 Solanum lycopersicum HOM05D005735 ORTHO05D006547 1.0e-55 219.9 118 88.1
Hma1.2p1_0766F.1_g215130 Hydrangea macrophylla HOM05D005735 ORTHO05D006547 1.3e-55 219.5 118 88.1
CAN.G229.30 Capsicum annuum HOM05D005735 ORTHO05D006547 1.7e-55 219.2 118 88.1
Nitab4.5_0000362g0060 Nicotiana tabacum HOM05D005735 ORTHO05D006547 1.7e-55 219.2 118 89.0
QL07p028744 Quercus lobata HOM05D005735 ORTHO05D006547 1.7e-55 219.2 118 89.0
Phvul.010G015300 Phaseolus vulgaris HOM05D005735 ORTHO05D006547 2.3e-55 218.8 118 87.3
RcHm_v2.0_Chr3g0465081 Rosa chinensis HOM05D005735 ORTHO05D006547 2.3e-55 218.8 118 87.3
TWI77G0204 Tripterygium wilfordii HOM05D005735 ORTHO05D006547 2.3e-55 218.8 117 88.9
Glyma.01G099700 Glycine max HOM05D005735 ORTHO05D006547 3.0e-55 218.4 118 87.3
Nn2g13495 Nelumbo nucifera HOM05D005735 ORTHO05D006547 3.0e-55 218.4 118 87.3
CiPaw.09G199400 Carya illinoinensis HOM05D005735 ORTHO05D006547 3.9e-55 218.0 118 88.1
Haze_20854 Corylus avellana HOM05D005735 ORTHO05D006547 3.9e-55 218.0 118 88.1
Haze_20857 Corylus avellana HOM05D005735 ORTHO05D006547 3.9e-55 218.0 118 88.1
Psat7g240200 Pisum sativum HOM05D005735 ORTHO05D006547 3.9e-55 218.0 118 86.4
TAR636G0229 Trochodendron aralioides HOM05D005735 ORTHO05D006547 3.9e-55 218.0 118 89.8
Gohir.D09G149000 Gossypium hirsutum HOM05D005735 ORTHO05D006547 5.1e-55 217.6 118 87.3
Gorai.006G170200 Gossypium raimondii HOM05D005735 ORTHO05D006547 5.1e-55 217.6 118 87.3
MD12G1150800 Malus domestica HOM05D005735 ORTHO05D006547 5.1e-55 217.6 118 87.3
Potri.006G091000 Populus trichocarpa HOM05D005735 ORTHO05D006547 5.1e-55 217.6 118 88.1
COL.COLO4_14723 Corchorus olitorius HOM05D005735 ORTHO05D006547 6.6e-55 217.2 118 86.4
FvH4_6g12970 Fragaria vesca HOM05D005735 ORTHO05D006547 6.6e-55 217.2 118 87.3
Gohir.A09G153300 Gossypium hirsutum HOM05D005735 ORTHO05D006547 6.6e-55 217.2 118 86.4
SGA_v2.0_scaffold75G24970 Striga asiatica HOM05D005735 ORTHO05D006547 6.6e-55 217.2 118 86.4
Ca_20080_v3 Cicer arietinum L. HOM05D005735 ORTHO05D006547 8.7e-55 216.9 116 87.1
Sopen09g006020 Solanum pennellii HOM05D005735 ORTHO05D006547 8.7e-55 216.9 118 86.4
TPR.G17885 Trifolium pratense HOM05D005735 ORTHO05D006547 8.7e-55 216.9 118 86.4
CiPaw.10G148500 Carya illinoinensis HOM05D005735 ORTHO05D006547 1.1e-54 216.5 118 86.4
Duzib093G1348 Durio zibethinus HOM05D005735 ORTHO05D006547 1.1e-54 216.5 118 87.3
Sed0015161 Sechium edule HOM05D005735 ORTHO05D006547 1.1e-54 216.5 118 86.4
Lalb_Chr22g0358651 Lupinus albus HOM05D005735 ORTHO05D006547 1.5e-54 216.1 118 87.3
Lalb_Chr24g0401021 Lupinus albus HOM05D005735 ORTHO05D006547 1.5e-54 216.1 118 87.3
Manes.09G096300 Manihot esculenta HOM05D005735 ORTHO05D006547 1.5e-54 216.1 118 86.4
Prupe.6G262400 Prunus persica HOM05D005735 ORTHO05D006547 1.9e-54 215.7 118 85.6
Ciclev10012178m.g Citrus clementina HOM05D005735 ORTHO05D006547 2.5e-54 215.3 118 85.6
Lsat_1_v5_gn_8_84641 Lactuca sativa HOM05D005735 ORTHO05D006547 2.5e-54 215.3 118 85.6
MBI14_g09010_MAGBIO Magnolia biondii HOM05D005735 ORTHO05D006547 3.3e-54 214.9 118 88.1
Peaxi162Scf00318g00510 Petunia axillaris HOM05D005735 ORTHO05D006547 3.3e-54 214.9 116 87.9
THA.LOC104805616 Tarenaya hassleriana HOM05D005735 ORTHO05D006547 3.3e-54 214.9 118 85.6
Thecc.05G031800 Theobroma cacao HOM05D005735 ORTHO05D006547 3.3e-54 214.9 118 85.6
Medtr4g020090 Medicago truncatula HOM05D005735 ORTHO05D006547 4.3e-54 214.5 118 85.6
Migut.J00281 Erythranthe guttata HOM05D005735 ORTHO05D006547 5.6e-54 214.2 118 85.6
FAN02G2999 Fragaria x ananassa HOM05D005735 ORTHO05D006547 5.6e-54 214.2 116 87.1
Rhsim04G0162200 Rhododendron simsii HOM05D005735 ORTHO05D006547 5.6e-54 214.2 118 87.3
HanXRQChr04g0124581 Helianthus annuus HOM05D005735 ORTHO05D006547 7.3e-54 213.8 118 85.6
Aqoxy2G02353 Aquilegia oxysepala HOM05D005735 ORTHO05D006547 1.3e-53 213.0 118 86.4
Cpa.g.sc56.31 Carica papaya HOM05D005735 ORTHO05D006547 1.3e-53 213.0 118 87.3
Atru.chr8.2067 Acer truncatum HOM05D005735 ORTHO05D006547 1.6e-53 212.6 118 86.4
PSO339G4903 Papaver somniferum HOM05D005735 ORTHO05D006547 1.6e-53 212.6 118 88.1
vmacro08634 Vaccinium macrocarpon HOM05D005735 ORTHO05D006547 1.6e-53 212.6 118 86.4
Cc06_g02200 Coffea canephora HOM05D005735 ORTHO05D006547 2.1e-53 212.2 118 86.4
AT3G53900 Arabidopsis thaliana HOM05D005735 ORTHO05D006547 3.6e-53 211.5 118 81.4
CARHR163810 Cardamine hirsuta HOM05D005735 ORTHO05D006547 3.6e-53 211.5 118 82.2
Carub.0005s2048 Capsella rubella HOM05D005735 ORTHO05D006547 4.8e-53 211.1 118 82.2
Duzib128G0016 Durio zibethinus HOM05D005735 ORTHO05D006547 4.8e-53 211.1 116 87.1
Lj2A88G66 Lonicera japonica HOM05D005735 ORTHO05D006547 4.8e-53 211.1 118 88.1
Sc01g0004650 Simmondsia chinensis HOM05D005735 ORTHO05D006547 4.8e-53 211.1 118 83.1
PSO513G0055 Papaver somniferum HOM05D005735 ORTHO05D006547 6.2e-53 210.7 118 87.3
Oeu001404.1 Olea europaea HOM05D005735 ORTHO05D006547 8.1e-53 210.3 116 85.3
VMungo0331G1562 Vigna mungo HOM05D005735 ORTHO05D006547 8.1e-53 210.3 118 83.1
FAN05G2836 Fragaria x ananassa HOM05D005735 ORTHO05D006547 1.1e-52 209.9 124 83.1
AL5G34880 Arabidopsis lyrata HOM05D005735 ORTHO05D006547 1.4e-52 209.5 118 80.5
Hund16974 Selenicereus undatus HOM05D005735 ORTHO05D006547 1.8e-52 209.1 118 82.2
CANSAT35G1842 Cannabis sativa HOM05D005735 ORTHO05D006547 2.4e-52 208.8 118 83.1
Aa31sc27G110 Aethionema arabicum HOM05D005735 ORTHO05D006547 4.0e-52 208.0 118 79.7
Thhalv10010595m.g Eutrema salsugineum HOM05D005735 ORTHO05D006547 4.0e-52 208.0 118 81.4
EL10Ac1g00952 Beta vulgaris HOM05D005735 ORTHO05D006547 5.3e-52 207.6 118 81.4
A09p46850 Brassica napus HOM05D005735 ORTHO05D006547 1.2e-51 206.5 118 80.5
DCAR_028771 Daucus carota HOM05D005735 ORTHO05D006547 1.2e-51 206.5 118 81.4
BraA09t40153Z Brassica rapa HOM05D005735 ORTHO05D006547 1.5e-51 206.1 118 80.5
Zm00001eb289550 Zea mays HOM05D005735 ORTHO05D006547 1.5e-51 206.1 117 82.9
Os05g0455700 Oryza sativa ssp. japonica HOM05D005735 ORTHO05D006547 2.0e-51 205.7 117 82.1
BcaB02g07762 Brassica carinata HOM05D005735 ORTHO05D006547 2.6e-51 205.3 118 79.7
BcaC08g44651 Brassica carinata HOM05D005735 ORTHO05D006547 2.6e-51 205.3 118 79.7
A07p21840 Brassica napus HOM05D005735 ORTHO05D006547 2.6e-51 205.3 118 79.7
C06p21670 Brassica napus HOM05D005735 ORTHO05D006547 2.6e-51 205.3 118 79.7
BolC6t37356H Brassica oleracea HOM05D005735 ORTHO05D006547 2.6e-51 205.3 118 79.7
BraA07t29866Z Brassica rapa HOM05D005735 ORTHO05D006547 2.6e-51 205.3 118 79.7
BcaB01g00229 Brassica carinata HOM05D005735 ORTHO05D006547 3.4e-51 204.9 118 79.7
ATR0559G328 Amborella trichopoda HOM05D005735 ORTHO05D006547 7.6e-51 203.8 118 79.7
Sp5g08500 Schrenkiella parvula HOM05D005735 ORTHO05D006547 1.3e-50 203.0 118 80.5
BcaC07g39745 Brassica carinata HOM05D000012 ORTHO05D002345 1.7e-50 202.6 118 79.7
C08p29170 Brassica napus HOM05D005735 ORTHO05D006547 1.7e-50 202.6 118 79.7
BolC8t50518H Brassica oleracea HOM05D005735 ORTHO05D006547 1.7e-50 202.6 118 79.7
HPP92_027961 Vanilla planifolia HOM05D005735 ORTHO05D006547 2.9e-50 201.8 117 82.1
AUR62004273 Chenopodium quinoa HOM05D005735 ORTHO05D006547 3.8e-50 201.4 118 78.8
CDE04G2966 Ceratophyllum demersum HOM05D005735 ORTHO05D006547 1.2e-48 196.4 118 81.4
AUR62033384 Chenopodium quinoa HOM05D005735 ORTHO05D006547 3.9e-47 191.4 129 71.3
Nn2g13496 Nelumbo nucifera HOM05D005735 ORTHO05D006547 6.6e-47 190.7 102 88.2
Migut.J00280 Erythranthe guttata HOM05D005735 ORTHO05D006547 1.1e-46 189.9 116 77.6
Mapoly0035s0109 Marchantia polymorpha HOM05D005735 ORTHO05D006547 2.8e-45 185.3 118 74.6
AagrBONN_evm.TU.Sc2ySwM_228.3184 Anthoceros agrestis HOM05D005735 ORTHO05D006547 3.6e-45 184.9 117 72.6
SMO147G0009 Selaginella moellendorffii HOM05D005735 ORTHO05D006547 1.8e-44 182.6 116 69.8
Pp3c9_24300 Physcomitrium patens HOM05D005735 ORTHO05D006547 9.9e-43 176.8 118 71.2
Sabra06G0068800 Salix brachista HOM05D005735 ORTHO05D006547 1.9e-41 172.6 123 69.9
ClCG04G007800 Citrullus lanatus HOM05D005735 ORTHO05D006547 6.0e-40 167.5 121 71.9
CSS0015426 Camellia sinensis var. sinensis HOM05D005735 ORTHO05D006547 1.0e-39 166.8 91 86.8
CBR_g17719 Chara braunii HOM05D005735 ORTHO05D006547 1.9e-38 162.5 118 59.3
Zm00001eb412190 Zea mays HOM05D005735 ORTHO05D006547 9.6e-38 160.2 116 63.8
FAN14G2901 Fragaria x ananassa HOM05D005735 ORTHO05D006547 8.1e-37 157.1 87 86.2
MCO15G321 Micromonas commoda HOM05D005735 ORTHO05D006547 1.8e-36 156.0 118 59.3
Nitab4.5_0006535g0030 Nicotiana tabacum HOM05D005735 ORTHO05D006547 1.8e-36 156.0 118 69.5
Hund27335 Selenicereus undatus HOM05D005735 ORTHO05D006547 4.0e-36 154.8 261 38.3
unitig_578.g15880 Utricularia gibba HOM05D005735 ORTHO05D006547 4.0e-36 154.8 87 83.9
CANSAT35G0868 Cannabis sativa HOM05D005735 ORTHO05D006547 1.5e-35 152.9 87 81.6
Ah.05g175740 Amaranthus hybridus HOM05D005735 ORTHO05D006547 2.0e-35 152.5 118 63.6
PRCOL_00001881 Prasinoderma coloniale HOM05D005735 ORTHO05D006547 1.3e-31 139.8 109 56.9
DCAR_012131 Daucus carota HOM05D005735 ORTHO05D006547 4.3e-30 134.8 73 82.2
Cre11.g467778 Chlamydomonas reinhardtii HOM05D005735 ORTHO05D006547 7.4e-30 134.0 119 52.9
Lsat_1_v5_gn_9_19861 Lactuca sativa HOM05D005735 ORTHO05D006547 1.9e-25 119.4 71 80.3
Solyc03g063860.1 Solanum lycopersicum HOM05D005735 ORTHO05D006547 1.3e-23 113.2 117 56.4
MSTRG.5635 Avicennia marina HOM05D005735 ORTHO05D006547 8.2e-21 104.0 87 66.7
BraA09t38956Z Brassica rapa HOM05D011067 ORTHO05D028343 6.1e-16 87.8 74 54.1
BraA05t19030Z Brassica rapa HOM05D011067 ORTHO05D028343 1.8e-15 86.3 74 52.7
FAN09G1978 Fragaria x ananassa HOM05D005735 ORTHO05D006547 1.4e-12 76.6 45 82.2
BcaC05g28138 Brassica carinata HOM05D011067 ORTHO05D014965 7.2e-09 64.3 49 57.1
A03p21220 Brassica napus HOM05D011067 ORTHO05D014965 9.4e-09 63.9 54 53.7
C01p21930 Brassica napus HOM05D011067 ORTHO05D014965 9.4e-09 63.9 54 53.7
BcaC03g14360 Brassica carinata HOM05D011067 ORTHO05D014965 2.7e-08 62.4 54 53.7
BolC3t18757H Brassica oleracea HOM05D011067 ORTHO05D028343 4.7e-08 61.6 59 49.2
C03p64990 Brassica napus HOM05D011067 ORTHO05D014965 7.9e-08 60.8 54 50.0
BolC9t54418H Brassica oleracea HOM05D011067 ORTHO05D028343 1.8e-07 59.7 59 50.8
BcaC04g22813 Brassica carinata HOM05D011067 ORTHO05D014965 3.0e-07 58.9 54 51.9
C09p15120 Brassica napus HOM05D011067 ORTHO05D014965 3.0e-07 58.9 54 51.9


User provided reference genes

Program Settings