Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042680 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 2.1e-120 435.6 209 100.0
RhsimUnG0250600 Rhododendron simsii HOM05D006187 ORTHO05D007621 2.9e-106 388.7 209 88.0
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 2.1e-104 382.5 209 85.6
DCAR_022562 Daucus carota HOM05D006187 ORTHO05D007621 2.7e-104 382.1 209 85.2
CAN.G337.132 Capsicum annuum HOM05D006187 ORTHO05D007621 8.8e-103 377.1 209 84.7
Nn1g03532 Nelumbo nucifera HOM05D006187 ORTHO05D007621 2.6e-102 375.6 209 84.2
COL.COLO4_09662 Corchorus olitorius HOM05D006187 ORTHO05D007621 3.3e-102 375.2 209 85.2
Oeu005532.1 Olea europaea HOM05D006187 ORTHO05D007621 4.4e-102 374.8 209 84.7
CSS0049447 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 5.7e-102 374.4 209 85.2
Peaxi162Scf00964g00021 Petunia axillaris HOM05D006187 ORTHO05D007621 5.7e-102 374.4 209 85.2
Dinv40753 Davidia involucrata HOM05D006187 ORTHO05D007621 2.8e-101 372.1 209 84.7
Haze_09689 Corylus avellana HOM05D006187 ORTHO05D007621 3.7e-101 371.7 209 84.2
MSTRG.26280 Avicennia marina HOM05D006187 ORTHO05D007621 4.8e-101 371.3 209 83.7
Cfa020345 Carpinus fangiana HOM05D006187 ORTHO05D007621 1.1e-100 370.2 209 83.3
Cc05_g13690 Coffea canephora HOM05D006187 ORTHO05D007621 1.1e-100 370.2 209 84.2
ECA246G0646 Erigeron canadensis HOM05D006187 ORTHO05D007621 1.4e-100 369.8 209 83.7
PGSC0003DMG400022319 Solanum tuberosum HOM05D006187 ORTHO05D007621 2.4e-100 369.0 209 83.3
Thecc.07G036900 Theobroma cacao HOM05D006187 ORTHO05D007621 2.4e-100 369.0 209 83.7
RcHm_v2.0_Chr5g0039431 Rosa chinensis HOM05D006187 ORTHO05D007621 5.3e-100 367.9 209 83.7
CiPaw.11G189300 Carya illinoinensis HOM05D006187 ORTHO05D007621 7.0e-100 367.5 209 85.2
Solyc07g064590.3 Solanum lycopersicum HOM05D006187 ORTHO05D007621 9.1e-100 367.1 209 82.3
Lalb_Chr10g0106971 Lupinus albus HOM05D006187 ORTHO05D007621 1.2e-99 366.7 209 82.3
THA.LOC104816937 Tarenaya hassleriana HOM05D006187 ORTHO05D007621 1.2e-99 366.7 209 82.8
Ciclev10009486m.g Citrus clementina HOM05D006187 ORTHO05D007621 2.6e-99 365.5 209 83.3
Manes.15G071900 Manihot esculenta HOM05D006187 ORTHO05D007621 3.5e-99 365.2 209 83.7
Sopen07g032780 Solanum pennellii HOM05D006187 ORTHO05D007621 3.5e-99 365.2 209 81.8
Gohir.D01G066500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 4.5e-99 364.8 209 82.8
TAR626G1058 Trochodendron aralioides HOM05D006187 ORTHO05D007621 7.7e-99 364.0 209 82.3
Sed0017183 Sechium edule HOM05D006187 ORTHO05D007621 1.7e-98 362.8 209 80.9
Prupe.4G212700 Prunus persica HOM05D006187 ORTHO05D007621 2.9e-98 362.1 209 82.8
HPP92_016292 Vanilla planifolia HOM05D006187 ORTHO05D007621 3.8e-98 361.7 208 80.8
PGR083G2749 Punica granatum HOM05D006187 ORTHO05D007621 5.0e-98 361.3 209 82.8
Gorai.002G088500 Gossypium raimondii HOM05D006187 ORTHO05D007621 6.5e-98 360.9 209 81.8
Duzib170G0579 Durio zibethinus HOM05D006187 ORTHO05D007621 8.5e-98 360.5 209 81.8
Gohir.A01G079500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 8.5e-98 360.5 209 81.8
Potri.001G435500 Populus trichocarpa HOM05D006187 ORTHO05D007621 1.5e-97 359.8 209 81.3
VMungo0647G0583 Vigna mungo HOM05D006187 ORTHO05D007621 1.9e-97 359.4 209 82.3
FvH4_3g22670 Fragaria vesca HOM05D006187 ORTHO05D007621 3.2e-97 358.6 209 81.3
GSVIVG01037647001 Vitis vinifera HOM05D006187 ORTHO05D007621 5.5e-97 357.8 209 81.3
TWI39G1048 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 1.2e-96 356.7 209 79.4
unitig_746.g26546 Utricularia gibba HOM05D006187 ORTHO05D007621 1.2e-96 356.7 209 80.4
arahy.Tifrunner.gnm1.ann1.KHU2SV Arachis hypogaea HOM05D006187 ORTHO05D007621 1.6e-96 356.3 209 80.9
arahy.Tifrunner.gnm1.ann1.YIAG1Z Arachis hypogaea HOM05D006187 ORTHO05D007621 1.6e-96 356.3 209 80.9
PSO210G0259 Papaver somniferum HOM05D006187 ORTHO05D007621 1.6e-96 356.3 209 78.5
Aa31LG10G3660 Aethionema arabicum HOM05D006187 ORTHO05D007621 2.7e-96 355.5 209 81.3
Potri.011G139500 Populus trichocarpa HOM05D006187 ORTHO05D007621 2.7e-96 355.5 209 81.8
Phvul.008G266900 Phaseolus vulgaris HOM05D006187 ORTHO05D007621 4.7e-96 354.8 209 81.3
Ah.06g186030 Amaranthus hybridus HOM05D006187 ORTHO05D007621 6.1e-96 354.4 209 78.9
A06p02950 Brassica napus HOM05D006187 ORTHO05D007621 6.1e-96 354.4 209 80.4
CARHR040720 Cardamine hirsuta HOM05D006187 ORTHO05D007621 6.1e-96 354.4 209 80.9
Eucgr.F00764 Eucalyptus grandis HOM05D006187 ORTHO05D007621 6.1e-96 354.4 209 81.8
MD11G1218600 Malus domestica HOM05D006187 ORTHO05D007621 6.1e-96 354.4 209 81.3
Aqoxy1G03401 Aquilegia oxysepala HOM05D006187 ORTHO05D007621 8.0e-96 354.0 209 79.9
SalBow5G2755 Salvia bowleyana HOM05D006187 ORTHO05D007621 8.0e-96 354.0 225 77.3
PSO832G1277 Papaver somniferum HOM05D006187 ORTHO05D007621 1.4e-95 353.2 209 77.5
CANSAT11G0252 Cannabis sativa HOM05D006187 ORTHO05D007621 1.8e-95 352.8 209 80.4
Migut.K00331 Erythranthe guttata HOM05D006187 ORTHO05D007621 1.8e-95 352.8 208 79.3
AL1G58340 Arabidopsis lyrata HOM05D006187 ORTHO05D007621 2.3e-95 352.4 209 79.9
C06p05930 Brassica napus HOM05D006187 ORTHO05D007621 2.3e-95 352.4 209 80.4
AT1G50670 Arabidopsis thaliana HOM05D006187 ORTHO05D007621 8.8e-95 350.5 209 79.4
CiPaw.12G129700 Carya illinoinensis HOM05D006187 ORTHO05D007621 8.8e-95 350.5 209 80.9
BcaB07g33507 Brassica carinata HOM05D006187 ORTHO05D007621 1.2e-94 350.1 209 79.9
TPR.G1184 Trifolium pratense HOM05D006187 ORTHO05D007621 1.2e-94 350.1 209 79.4
Psat2g010920 Pisum sativum HOM05D006187 ORTHO05D007621 1.5e-94 349.7 209 78.5
BcaC08g43245 Brassica carinata HOM05D006187 ORTHO05D007621 3.3e-94 348.6 209 79.9
BraA06t23501Z Brassica rapa HOM05D006187 ORTHO05D007621 4.4e-94 348.2 210 80.0
AUR62020447 Chenopodium quinoa HOM05D006187 ORTHO05D007621 4.4e-94 348.2 209 78.9
CsaV3_7G021800 Cucumis sativus L. HOM05D006187 ORTHO05D007621 4.4e-94 348.2 209 78.5
FAN16G3112 Fragaria x ananassa HOM05D006187 ORTHO05D007621 4.4e-94 348.2 221 76.9
Thhalv10011780m.g Eutrema salsugineum HOM05D006187 ORTHO05D007621 5.7e-94 347.8 209 79.9
LjContig00272g0005891 Lotus japonicus HOM05D006187 ORTHO05D007621 5.7e-94 347.8 209 78.0
ATR0794G016 Amborella trichopoda HOM05D006187 ORTHO05D007621 9.7e-94 347.1 209 78.5
Sp1g37520 Schrenkiella parvula HOM05D006187 ORTHO05D007621 1.3e-93 346.7 209 78.5
Carub.0001s3971 Capsella rubella HOM05D006187 ORTHO05D007621 1.7e-93 346.3 209 78.5
SGA_v2.0_scaffold347G49550 Striga asiatica HOM05D006187 ORTHO05D007621 2.2e-93 345.9 209 78.5
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 2.8e-93 345.5 215 79.1
CDE05G0514 Ceratophyllum demersum HOM05D006187 ORTHO05D007621 4.8e-93 344.7 209 78.0
Ca_06320_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 4.8e-93 344.7 209 78.5
Ca_30809_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 4.8e-93 344.7 209 78.5
AUR62015764 Chenopodium quinoa HOM05D006187 ORTHO05D007621 6.3e-93 344.4 209 78.0
FAN11G0395 Fragaria x ananassa HOM05D006187 ORTHO05D007621 3.1e-92 342.0 230 73.9
Sc16g0006050 Simmondsia chinensis HOM05D006187 ORTHO05D007621 5.3e-92 341.3 209 78.5
Oeu062696.2 Olea europaea HOM05D006187 ORTHO05D007621 7.0e-92 340.9 243 70.0
Zm00001eb207490 Zea mays HOM05D006187 ORTHO05D007621 7.0e-92 340.9 209 77.0
FAN25G1478 Fragaria x ananassa HOM05D006187 ORTHO05D007621 1.2e-91 340.1 230 73.5
EL10Ac4g07806 Beta vulgaris HOM05D006187 ORTHO05D007621 1.6e-91 339.7 209 77.0
FAN21G2137 Fragaria x ananassa HOM05D006187 ORTHO05D007621 7.7e-91 337.4 240 70.8
Lalb_Chr17g0348481 Lupinus albus HOM05D006187 ORTHO05D007621 2.2e-90 335.9 190 83.7
Lsat_1_v5_gn_5_3960 Lactuca sativa HOM05D006187 ORTHO05D007621 8.5e-90 334.0 191 84.3
HanXRQChr08g0233871 Helianthus annuus HOM05D006187 ORTHO05D007621 1.9e-89 332.8 187 84.5
TWI38G1854 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 1.6e-88 329.7 187 82.4
HanXRQChr05g0159371 Helianthus annuus HOM05D006187 ORTHO05D007621 1.0e-87 327.0 187 84.0
MELO3C013167.2 Cucumis melo HOM05D006187 ORTHO05D007621 4.0e-87 325.1 189 81.0
Medtr5g092720 Medicago truncatula HOM05D006187 ORTHO05D007621 5.7e-86 321.2 190 79.5
SEGI_20110 Sequoiadendron giganteum HOM05D006187 ORTHO05D007621 1.3e-85 320.1 206 72.3
ClCG09G010800 Citrullus lanatus HOM05D006187 ORTHO05D007621 1.7e-85 319.7 209 73.7
Pp3c26_11120 Physcomitrium patens HOM05D006187 ORTHO05D007621 1.4e-84 316.6 206 71.8
Mapoly0105s0022 Marchantia polymorpha HOM05D006187 ORTHO05D007621 2.4e-84 315.8 209 70.3
SMO201G0052 Selaginella moellendorffii HOM05D006187 ORTHO05D007621 7.0e-84 314.3 208 69.7
Glyma.02G291000 Glycine max HOM05D006187 ORTHO05D007621 2.0e-83 312.8 193 76.7
Glyma.14G023700 Glycine max HOM05D006187 ORTHO05D007621 7.7e-83 310.8 185 79.5
Sabra11G0125500 Salix brachista HOM05D006187 ORTHO05D007621 7.7e-83 310.8 288 57.3
vmacro09715 Vaccinium macrocarpon HOM05D006187 ORTHO05D007621 4.2e-81 305.1 165 87.3
Nitab4.5_0011129g0020 Nicotiana tabacum HOM05D006187 ORTHO05D007621 9.8e-78 293.9 209 71.8
AagrBONN_evm.TU.Sc2ySwM_344.4367 Anthoceros agrestis HOM05D004720 ORTHO05D007621 2.4e-76 289.3 205 65.9
QL08p010320 Quercus lobata HOM05D006187 ORTHO05D007621 5.9e-75 284.6 191 74.3
Lj1A872G52 Lonicera japonica HOM05D006187 ORTHO05D007621 2.9e-74 282.3 151 87.4
BolC6t35706H Brassica oleracea HOM05D006187 ORTHO05D007621 8.0e-72 274.2 165 79.4
SHI26611 Sapria himalayana HOM05D006187 ORTHO05D007621 5.0e-66 255.0 185 66.5
Hma1.2p1_0673F.1_g201350 Hydrangea macrophylla HOM05D006187 ORTHO05D007621 9.5e-65 250.8 209 63.6
Cre09.g409050 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 1.2e-62 243.8 204 58.3
MCO07G461 Micromonas commoda HOM05D006187 ORTHO05D007621 1.3e-61 240.4 211 56.4
CBR_g54108 Chara braunii HOM05D006187 ORTHO05D007621 1.7e-61 240.0 167 67.1
PSO675G5262 Papaver somniferum HOM05D006187 ORTHO05D007621 2.4e-60 236.1 210 54.8
HPP92_016312 Vanilla planifolia HOM05D006187 ORTHO05D007621 7.3e-57 224.6 135 77.8
PRCOL_00006206 Prasinoderma coloniale HOM05D006187 ORTHO05D007621 7.8e-51 204.5 206 50.0
Cpa.g.sc97.3 Carica papaya HOM05D006187 ORTHO05D007621 4.4e-46 188.7 149 63.8
PSO541G4439 Papaver somniferum HOM05D006187 ORTHO05D007621 1.9e-44 183.3 206 45.6
Haze_26155 Corylus avellana HOM05D006187 ORTHO05D007621 3.8e-37 159.1 208 38.5
MBI18_g14476_MAGBIO Magnolia biondii HOM05D006187 ORTHO05D007621 1.9e-36 156.8 149 57.7
Cre06.g274700 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 7.1e-36 154.8 136 52.2
Prupe.4G233700 Prunus persica HOM05D006187 ORTHO05D007621 1.9e-33 146.7 126 59.5
Nitab4.5_0001913g0160 Nicotiana tabacum HOM05D006187 ORTHO05D007621 4.3e-33 145.6 79 87.3
Cfa025770 Carpinus fangiana HOM05D006187 ORTHO05D007621 1.4e-31 140.6 226 37.6
PSO675G9324 Papaver somniferum HOM05D006187 ORTHO05D007621 2.6e-30 136.3 135 49.6
Os02g0164800 Oryza sativa ssp. japonica HOM05D006187 ORTHO05D007621 4.2e-28 129.0 84 71.4
HPP92_016311 Vanilla planifolia HOM05D006187 ORTHO05D007621 2.1e-27 126.7 74 78.4
AUR62015776 Chenopodium quinoa HOM05D006187 ORTHO05D007621 6.7e-18 95.1 83 61.4
QL08p010315 Quercus lobata HOM05D006187 ORTHO05D007621 1.3e-13 80.9 43 81.4


User provided reference genes

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