Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 2.6e-169 598.6 298 100.0
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 1.2e-140 503.4 269 92.6
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.5e-140 503.1 269 92.9
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 3.9e-136 488.4 269 88.5
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 2.8e-134 482.3 269 88.5
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 1.1e-133 480.3 269 87.0
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 2.3e-133 479.2 269 87.0
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 1.2e-132 476.9 269 85.1
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 1.2e-132 476.9 269 86.6
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 5.8e-132 474.6 269 87.4
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 5.8e-132 474.6 269 85.5
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 4.9e-131 471.5 269 85.9
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 8.3e-131 470.7 269 82.2
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 8.3e-131 470.7 269 84.0
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 1.9e-130 469.5 269 84.0
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 1.9e-130 469.5 269 84.4
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 2.4e-130 469.2 269 85.1
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.2e-130 468.8 271 86.7
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 5.4e-130 468.0 269 83.6
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 7.1e-130 467.6 269 83.6
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 7.1e-130 467.6 269 83.6
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 7.1e-130 467.6 269 83.6
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 1.2e-129 466.8 269 83.3
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.2e-129 466.8 269 82.9
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.7e-129 465.7 269 83.3
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.5e-129 465.3 269 82.9
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 6.0e-129 464.5 269 84.0
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 6.0e-129 464.5 269 84.0
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.7e-128 463.0 269 82.5
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 1.5e-127 459.9 269 81.0
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 1.9e-127 459.5 269 81.0
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.9e-127 459.5 269 82.9
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 2.5e-127 459.1 269 82.5
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 3.3e-127 458.8 269 80.7
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 7.3e-127 457.6 269 81.4
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 9.5e-127 457.2 269 82.9
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 9.5e-127 457.2 269 80.7
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 1.2e-126 456.8 269 81.4
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.2e-126 456.8 269 82.2
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 2.1e-126 456.1 269 82.2
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 4.7e-126 454.9 269 81.4
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 6.2e-126 454.5 269 81.0
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 1.4e-125 453.4 269 79.9
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 1.8e-125 453.0 305 76.7
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 2.3e-125 452.6 269 81.4
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 2.3e-125 452.6 269 80.3
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 3.1e-125 452.2 273 81.0
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 4.0e-125 451.8 269 82.9
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 5.2e-125 451.4 269 79.9
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 8.9e-125 450.7 279 81.7
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 1.5e-124 449.9 269 80.7
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 2.0e-124 449.5 269 80.7
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 2.0e-124 449.5 269 79.2
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 3.4e-124 448.7 280 77.1
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 7.6e-124 447.6 269 77.7
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 9.9e-124 447.2 269 79.2
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.7e-123 446.4 253 87.0
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 3.7e-123 445.3 269 77.7
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 3.7e-123 445.3 269 79.9
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 4.9e-123 444.9 269 80.3
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 1.4e-122 443.4 269 79.2
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 1.9e-122 443.0 269 79.6
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 1.9e-122 443.0 269 79.2
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.4e-122 442.6 275 80.0
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 3.2e-122 442.2 269 79.2
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 3.2e-122 442.2 269 80.7
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 4.1e-122 441.8 269 77.3
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 4.1e-122 441.8 269 79.9
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 5.4e-122 441.4 269 79.2
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.3e-120 436.0 264 79.2
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 2.3e-120 436.0 269 77.7
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 6.6e-120 434.5 253 83.4
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 2.5e-119 432.6 269 77.0
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 2.5e-119 432.6 270 78.1
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 5.6e-119 431.4 270 78.9
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 5.6e-119 431.4 269 78.1
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 2.1e-118 429.5 270 77.4
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 3.6e-118 428.7 269 77.7
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 1.4e-117 426.8 328 66.5
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.8e-117 426.4 270 76.3
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 3.1e-117 425.6 256 82.8
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 5.2e-117 424.9 270 76.7
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 6.8e-117 424.5 270 76.3
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.2e-116 423.7 270 75.6
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.2e-116 423.7 266 78.2
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.5e-116 423.3 273 76.9
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 2.0e-116 422.9 269 77.3
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 2.0e-116 422.9 253 81.0
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 2.6e-116 422.5 269 76.6
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 3.4e-116 422.2 300 72.3
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 7.6e-116 421.0 273 76.2
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 9.9e-116 420.6 272 77.9
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 1.7e-115 419.9 273 76.2
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 2.9e-115 419.1 273 75.8
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 2.9e-115 419.1 269 79.2
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 4.9e-115 418.3 270 75.6
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 4.9e-115 418.3 273 75.8
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 1.4e-114 416.8 270 75.6
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 1.9e-114 416.4 273 75.8
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.4e-114 416.0 269 77.3
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 9.3e-114 414.1 273 75.5
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 2.1e-113 412.9 273 75.1
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 2.1e-113 412.9 273 75.5
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 2.1e-113 412.9 273 75.1
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 2.1e-113 412.9 273 74.4
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 2.7e-113 412.5 273 75.1
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 2.7e-113 412.5 269 75.8
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 3.5e-113 412.1 273 75.5
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 3.5e-113 412.1 253 79.8
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 1.0e-112 410.6 273 75.1
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 1.0e-112 410.6 269 76.6
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.1e-111 407.1 273 74.4
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 1.1e-111 407.1 253 77.9
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 1.5e-111 406.8 270 74.4
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 1.9e-111 406.4 247 80.6
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 9.6e-111 404.1 314 65.6
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 1.3e-110 403.7 240 80.0
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 3.6e-110 402.1 282 71.3
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 4.8e-110 401.7 270 74.4
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 5.3e-109 398.3 269 74.3
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 6.9e-109 397.9 269 71.0
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 6.9e-109 397.9 269 71.0
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 2.9e-107 392.5 259 74.9
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 4.9e-107 391.7 293 68.6
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.4e-106 390.2 266 73.3
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.4e-106 390.2 269 71.4
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 5.4e-106 388.3 271 73.4
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 5.4e-106 388.3 271 73.4
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 1.2e-105 387.1 276 71.4
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 1.6e-105 386.7 250 76.8
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.3e-102 377.1 258 79.1
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 1.3e-102 377.1 218 83.9
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 6.2e-102 374.8 259 72.6
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 6.9e-101 371.3 213 85.9
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 2.6e-100 369.4 269 71.4
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 4.5e-100 368.6 270 70.4
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 5.8e-100 368.2 213 83.1
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 4.2e-98 362.1 263 70.7
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 1.2e-97 360.5 223 78.9
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 6.0e-97 358.2 270 64.4
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 3.7e-94 349.0 269 65.4
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 4.8e-94 348.6 328 57.9
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 6.7e-88 328.2 280 59.3
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 7.6e-84 314.7 241 68.5
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 9.7e-79 297.7 273 58.6
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 1.8e-77 293.5 273 59.3
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 4.5e-76 288.9 226 65.0
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 1.0e-72 277.7 213 62.4
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 1.7e-54 217.2 172 63.4
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 2.8e-54 216.5 172 61.0
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 3.7e-54 216.1 175 65.7
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.1e-53 214.5 271 49.8
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.4e-53 214.2 320 44.7
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 2.2e-51 206.8 119 81.5
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.1e-49 200.3 198 61.1
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 8.8e-48 194.9 269 45.0
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 6.3e-46 188.7 122 76.2
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.0e-43 181.4 179 58.1
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 9.8e-31 138.3 83 75.9
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.3e-27 127.9 292 36.3
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.5e-26 124.4 119 55.5
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 4.3e-26 122.9 269 35.3
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 1.4e-24 117.9 220 33.2
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 2.4e-21 107.1 93 58.1
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 8.6e-19 98.6 162 38.3
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.5e-18 97.1 53 83.0
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.3e-18 96.3 55 78.2
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.3e-16 90.5 74 67.6
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.8e-09 67.0 37 81.1
SEGI_16571 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.5e-07 61.2 48 64.6


User provided reference genes

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