Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 7.2e-119 430.6 224 100.0
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 7.2e-119 430.6 224 100.0
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 8.0e-94 347.4 226 80.1
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 9.2e-90 334.0 225 77.8
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 2.7e-89 332.4 243 73.7
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.6e-86 322.0 226 74.8
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 5.2e-85 318.2 227 74.9
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.2e-84 317.0 226 73.9
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 1.3e-83 313.5 230 73.9
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 3.2e-82 308.9 227 74.0
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 1.0e-80 303.9 225 76.0
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.0e-80 303.9 226 73.5
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 2.3e-80 302.8 223 70.9
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 6.6e-80 301.2 226 71.7
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.6e-78 296.6 223 69.1
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 2.8e-78 295.8 230 70.0
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 2.8e-78 295.8 223 68.6
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 1.8e-77 293.1 232 68.1
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 6.8e-77 291.2 227 70.0
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 8.9e-77 290.8 226 66.8
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 2.0e-76 289.7 225 70.7
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 3.7e-75 285.4 220 68.2
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.1e-74 283.9 223 68.6
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 4.1e-74 282.0 233 69.5
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 9.2e-74 280.8 227 67.8
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 9.2e-74 280.8 228 66.7
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 1.3e-72 276.9 227 68.7
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 1.3e-72 276.9 227 68.7
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.1e-71 273.9 242 62.8
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 1.5e-71 273.5 240 66.7
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 2.5e-71 272.7 231 65.8
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 3.3e-71 272.3 224 67.4
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 3.6e-70 268.9 224 65.6
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 3.6e-70 268.9 230 63.0
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 3.6e-70 268.9 236 63.6
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 4.7e-70 268.5 229 65.9
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 1.1e-69 267.3 233 62.2
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 2.3e-69 266.2 207 67.6
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 3.1e-69 265.8 230 62.6
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 4.0e-69 265.4 210 69.5
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 5.2e-69 265.0 223 63.7
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 2.2e-67 259.6 235 63.0
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 6.4e-67 258.1 227 64.3
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 8.3e-67 257.7 228 64.0
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 8.3e-67 257.7 235 63.4
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 1.1e-66 257.3 213 63.8
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 1.2e-65 253.8 228 63.2
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 1.6e-65 253.4 228 62.3
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 2.1e-65 253.1 235 59.1
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 7.8e-65 251.1 254 59.1
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 1.0e-64 250.8 234 59.8
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 5.1e-64 248.4 228 60.1
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 5.1e-64 248.4 229 64.2
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 8.6e-64 247.7 229 63.3
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 1.1e-63 247.3 231 59.7
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 1.5e-63 246.9 232 59.9
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 1.9e-63 246.5 237 60.3
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 2.5e-63 246.1 227 59.9
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 4.3e-63 245.4 225 60.4
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 5.6e-63 245.0 234 59.8
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 2.8e-62 242.7 224 59.8
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 3.6e-62 242.3 241 56.8
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 4.7e-62 241.9 225 59.6
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 6.2e-62 241.5 240 56.7
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 8.1e-62 241.1 239 56.9
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 1.4e-61 240.4 210 64.8
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 1.8e-61 240.0 217 60.8
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.8e-61 240.0 237 57.8
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 3.1e-61 239.2 156 76.9
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.2e-61 238.4 246 55.3
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 6.8e-61 238.0 202 64.4
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 8.9e-61 237.7 227 60.4
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 2.0e-60 236.5 232 58.2
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 4.4e-60 235.3 201 63.2
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 5.8e-60 235.0 228 61.4
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 5.8e-60 235.0 240 56.2
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 7.6e-60 234.6 202 63.9
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 7.6e-60 234.6 180 70.0
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 9.9e-60 234.2 230 57.8
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 2.9e-59 232.6 187 64.2
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 4.9e-59 231.9 227 56.4
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 6.4e-59 231.5 228 59.6
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 8.4e-59 231.1 230 56.5
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 8.4e-59 231.1 230 56.1
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 1.9e-58 229.9 225 56.9
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 4.1e-58 228.8 228 55.3
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 4.1e-58 228.8 232 58.6
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 4.1e-58 228.8 225 56.4
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 1.2e-57 227.3 210 58.6
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 2.7e-57 226.1 210 62.9
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 3.5e-57 225.7 230 57.4
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 4.6e-57 225.3 152 74.3
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 7.8e-57 224.6 227 56.4
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 1.0e-56 224.2 229 55.9
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 1.3e-56 223.8 229 55.9
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 1.7e-56 223.4 224 57.6
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 3.9e-56 222.2 229 53.7
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 5.1e-56 221.9 229 56.3
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 6.6e-56 221.5 252 51.2
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 1.1e-55 220.7 224 55.4
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 2.5e-55 219.5 240 52.1
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 2.5e-55 219.5 224 58.0
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 5.6e-55 218.4 227 55.5
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 5.6e-55 218.4 227 55.5
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 8.1e-54 214.5 225 54.2
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 1.8e-53 213.4 238 53.4
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 1.8e-53 213.4 224 56.2
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 4.0e-53 212.2 224 53.6
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 1.2e-52 210.7 242 52.1
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 1.2e-52 210.7 224 54.0
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 5.8e-52 208.4 224 52.2
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 7.6e-52 208.0 227 51.1
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 7.6e-52 208.0 230 53.9
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 9.9e-52 207.6 151 68.9
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 3.8e-51 205.7 225 53.3
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 1.1e-50 204.1 214 52.3
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 1.4e-50 203.8 226 53.1
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.9e-50 203.4 227 52.4
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 4.2e-50 202.2 241 50.2
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 4.2e-50 202.2 132 77.3
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 9.3e-50 201.1 241 49.8
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 2.1e-49 199.9 202 56.4
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 6.0e-49 198.4 246 48.8
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 6.0e-49 198.4 203 57.1
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 7.8e-49 198.0 230 48.7
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 2.3e-48 196.4 145 69.0
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 3.0e-48 196.1 233 48.1
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 6.2e-46 188.3 258 45.3
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 4.0e-45 185.7 209 52.6
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 1.5e-44 183.7 142 70.4
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 1.7e-43 180.3 246 44.7
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 6.4e-43 178.3 144 65.3
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 8.4e-43 177.9 226 46.9
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 1.4e-42 177.2 257 44.7
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 9.3e-42 174.5 163 54.6
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.1e-37 161.0 215 44.7
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 3.2e-34 149.4 128 58.6
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 5.5e-34 148.7 232 44.0
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 7.1e-34 148.3 220 41.4
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 2.3e-32 143.3 169 50.9
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 1.3e-24 117.5 73 79.5
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 1.9e-23 113.6 223 35.4
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 2.1e-22 110.2 156 46.8
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 7.6e-20 101.7 195 39.0
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 1.7e-19 100.5 64 75.0
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 5.0e-19 99.0 70 62.9
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 3.0e-16 89.7 91 52.7
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 3.0e-16 89.7 62 67.7
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 3.3e-15 86.3 56 67.9
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 3.3e-15 86.3 82 54.9
Hund30245 Selenicereus undatus HOM05D004719 ORTHO05D005519 6.5e-11 72.0 96 49.0
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.2e-09 67.8 48 66.7
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 4.6e-09 65.9 113 39.8
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 2.3e-08 63.5 150 34.0
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 3.9e-08 62.8 65 47.7
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 5.1e-08 62.4 68 41.2
MCO03G325 Micromonas commoda HOM05D004719 ORTHO05D005519 4.4e-07 59.3 207 27.5
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 9.7e-07 58.2 37 64.9


User provided reference genes

Program Settings