Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 4.7e-265 917.9 716 100.0
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 1.5e-263 912.9 716 99.6
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 1.6e-167 594.0 550 71.1
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 3.1e-155 553.1 536 61.8
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 3.7e-153 546.2 554 65.3
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 1.6e-151 540.8 535 63.7
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 1.9e-149 533.9 542 63.1
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 2.5e-149 533.5 445 77.1
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 5.2e-147 525.8 546 64.1
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 1.2e-146 524.6 462 59.7
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 2.2e-145 520.4 542 59.8
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 1.5e-141 507.7 537 63.1
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 2.5e-141 506.9 539 58.8
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 2.1e-140 503.8 539 63.6
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 8.1e-140 501.9 549 58.5
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 8.1e-140 501.9 537 64.6
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 8.1e-140 501.9 521 61.2
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 1.4e-139 501.1 539 63.5
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 2.6e-138 496.9 509 64.4
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 7.6e-138 495.4 531 58.4
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 1.3e-137 494.6 533 62.7
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 1.3e-137 494.6 536 60.6
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.6e-135 487.6 557 57.5
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.1e-135 487.3 551 58.6
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.1e-135 487.3 551 58.6
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 5.1e-134 482.6 561 55.6
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 7.4e-133 478.8 530 59.6
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 9.6e-133 478.4 548 59.9
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 1.3e-132 478.0 529 59.2
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 2.1e-132 477.2 529 58.8
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 4.8e-132 476.1 533 49.7
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 4.0e-131 473.0 520 61.7
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 1.2e-130 471.5 457 65.9
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 1.5e-130 471.1 532 60.5
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 3.2e-128 463.4 530 61.7
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 5.5e-128 462.6 520 59.8
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 4.6e-127 459.5 470 62.3
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 6.0e-127 459.1 532 56.4
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 7.9e-127 458.8 522 59.6
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 5.1e-126 456.1 448 64.5
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 3.3e-125 453.4 510 55.9
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 4.3e-125 453.0 435 66.9
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 5.6e-125 452.6 451 62.5
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 7.4e-125 452.2 534 55.6
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 2.8e-124 450.3 535 47.1
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 1.4e-123 448.0 512 56.2
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 9.0e-123 445.3 536 55.0
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 2.2e-121 440.7 366 72.7
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 7.1e-120 435.6 527 58.8
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 2.7e-119 433.7 520 52.5
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 2.7e-119 433.7 537 56.8
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 3.5e-119 433.3 537 56.1
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 3.5e-119 433.3 537 45.3
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 4.6e-119 433.0 406 66.7
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 2.3e-118 430.6 529 45.9
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 6.7e-118 429.1 521 56.0
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 1.1e-117 428.3 535 54.8
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 1.9e-117 427.6 520 54.8
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 4.3e-117 426.4 533 56.7
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 4.3e-117 426.4 448 59.2
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 5.7e-117 426.0 585 52.6
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 5.7e-117 426.0 450 59.3
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 9.6e-117 425.2 451 59.9
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 9.6e-117 425.2 510 58.2
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 3.7e-116 423.3 460 60.9
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 1.1e-115 421.8 492 56.3
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 1.4e-115 421.4 472 59.5
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 4.1e-115 419.9 520 55.4
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 5.3e-115 419.5 472 58.9
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 6.9e-115 419.1 364 65.9
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 2.6e-114 417.2 526 54.8
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 2.6e-114 417.2 439 59.7
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 7.6e-114 415.6 540 50.0
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 2.2e-113 414.1 522 55.7
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 2.9e-113 413.7 518 54.4
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 1.1e-112 411.8 581 51.8
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 1.4e-112 411.4 447 60.0
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 9.3e-112 408.7 339 78.5
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 2.1e-111 407.5 523 54.7
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 7.9e-111 405.6 521 49.5
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 5.1e-110 402.9 468 55.3
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 7.4e-109 399.1 459 59.5
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 1.6e-108 397.9 512 48.4
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 1.6e-108 397.9 526 51.9
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 8.2e-108 395.6 329 72.9
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 1.4e-107 394.8 512 53.7
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 3.4e-106 390.2 487 53.4
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 7.7e-106 389.0 357 69.2
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 2.2e-105 387.5 455 57.8
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 6.5e-105 386.0 308 77.6
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 3.2e-104 383.6 338 69.2
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 7.2e-104 382.5 440 61.6
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 6.1e-103 379.4 444 58.1
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 6.1e-103 379.4 330 69.4
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 1.1e-101 375.2 366 67.8
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 1.1e-101 375.2 366 67.8
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 1.1e-99 368.6 366 67.8
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 1.4e-99 368.2 366 67.5
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 1.4e-99 368.2 366 67.2
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 1.6e-95 354.8 386 58.5
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 9.1e-91 339.0 374 59.9
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 1.6e-74 285.0 198 67.2
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 2.4e-67 261.2 371 41.5
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 6.4e-60 236.5 541 34.0
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 9.2e-59 232.6 147 74.1
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.3e-57 228.8 196 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 4.3e-48 197.2 378 47.4
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 1.8e-46 191.8 398 40.5
Mapoly0038s0061 Marchantia polymorpha HOM05D006844 ORTHO05D008504 4.4e-37 160.6 388 44.8
EL10Ac2g03526 Beta vulgaris HOM05D006844 ORTHO05D008504 1.1e-24 119.4 197 65.5
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 6.9e-22 110.2 145 36.6
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 2.6e-21 108.2 61 77.0
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 5.8e-21 107.1 142 42.3
vmacro05905 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 9.0e-06 56.6 33 78.8


User provided reference genes

Program Settings