Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 1.9e-162 575.9 300 100.0
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 2.3e-136 489.2 292 90.1
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 9.6e-127 457.2 285 86.7
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 2.6e-124 449.1 293 82.9
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 3.2e-122 442.2 293 82.6
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 3.9e-120 435.3 294 81.0
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 9.0e-117 424.1 283 78.8
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 1.2e-116 423.7 293 78.8
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 2.0e-116 422.9 293 77.5
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 3.4e-116 422.2 292 77.1
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 2.2e-115 419.5 293 76.8
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 2.9e-115 419.1 277 82.7
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 8.4e-115 417.5 293 76.1
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.9e-114 416.4 293 76.1
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.9e-114 416.4 293 76.1
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 5.5e-114 414.8 293 75.8
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 7.1e-114 414.5 293 75.1
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 1.6e-113 413.3 293 75.4
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.1e-113 412.9 293 77.5
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 2.1e-113 412.9 293 76.1
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 2.7e-113 412.5 293 76.5
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 4.6e-113 411.8 293 76.8
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 4.6e-113 411.8 293 76.1
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 6.0e-113 411.4 293 76.1
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 7.9e-113 411.0 293 75.1
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 1.0e-112 410.6 294 76.2
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 1.8e-112 409.8 293 74.7
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 2.3e-112 409.5 293 75.4
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.3e-112 409.5 293 75.4
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 2.3e-112 409.5 294 75.5
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 2.3e-112 409.5 293 74.4
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 5.1e-112 408.3 293 75.1
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 6.7e-112 407.9 293 75.1
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 6.7e-112 407.9 293 75.8
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 1.9e-111 406.4 293 73.7
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 1.9e-111 406.4 293 75.4
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 2.5e-111 406.0 293 75.4
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 5.7e-111 404.8 293 74.1
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 9.6e-111 404.1 293 74.7
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 2.8e-110 402.5 293 74.7
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 3.7e-110 402.1 292 74.7
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 3.7e-110 402.1 291 74.2
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 6.3e-110 401.4 294 74.1
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 6.3e-110 401.4 293 73.4
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 8.2e-110 401.0 292 74.0
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 4.1e-109 398.7 292 75.3
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 5.3e-109 398.3 293 73.4
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 6.9e-109 397.9 293 74.1
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 6.9e-109 397.9 293 72.7
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 1.2e-108 397.1 291 74.6
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 1.2e-108 397.1 293 72.7
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 1.5e-108 396.7 293 73.4
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 3.4e-108 395.6 293 74.1
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 4.5e-108 395.2 293 72.4
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 1.0e-107 394.0 293 72.7
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 1.0e-107 394.0 293 73.4
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 1.7e-107 393.3 292 72.6
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 2.2e-107 392.9 293 72.4
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 2.9e-107 392.5 293 73.0
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 3.8e-107 392.1 293 73.4
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 1.1e-106 390.6 257 82.1
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 7.2e-106 387.9 294 71.4
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 2.1e-105 386.3 277 76.2
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 6.1e-105 384.8 293 71.7
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 7.9e-105 384.4 327 66.7
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 1.3e-104 383.6 293 71.3
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 8.7e-104 380.9 293 71.3
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 1.9e-103 379.8 293 70.0
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 7.4e-103 377.9 292 69.5
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 1.6e-102 376.7 293 72.0
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 6.3e-102 374.8 293 69.6
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 6.3e-102 374.8 293 69.6
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 6.3e-102 374.8 293 69.6
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.1e-101 374.0 293 71.7
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 1.4e-101 373.6 293 69.6
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 1.4e-101 373.6 293 69.6
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 4.1e-101 372.1 293 71.3
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 5.3e-101 371.7 292 68.5
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 1.0e-99 367.5 293 68.3
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 1.3e-99 367.1 293 68.6
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 3.8e-99 365.5 293 67.9
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 6.5e-99 364.8 292 68.8
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 6.5e-99 364.8 325 64.6
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 1.1e-98 364.0 293 68.6
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 1.1e-98 364.0 292 67.8
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 5.5e-98 361.7 294 67.0
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 7.9e-97 357.8 293 66.9
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 7.9e-97 357.8 293 66.6
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 1.0e-96 357.5 293 65.9
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 1.0e-96 357.5 293 65.9
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 2.3e-96 356.3 293 65.9
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 6.7e-96 354.8 293 67.6
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 3.3e-95 352.4 292 66.4
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 9.7e-95 350.9 292 65.8
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 1.7e-94 350.1 291 64.9
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 2.2e-94 349.7 293 65.2
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 2.2e-94 349.7 293 64.5
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 2.8e-94 349.4 293 65.9
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 3.7e-94 349.0 277 68.6
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 1.4e-93 347.1 289 67.1
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 1.5e-92 343.6 277 71.1
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 3.4e-92 342.4 294 64.3
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 4.5e-92 342.0 294 64.3
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 5.9e-92 341.7 405 52.3
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 1.2e-89 334.0 258 72.1
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 6.3e-86 321.6 292 64.7
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 5.0e-83 312.0 260 65.4
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 2.7e-73 279.6 230 68.7
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 8.8e-72 274.6 293 54.3
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 3.1e-69 266.2 197 73.1
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 2.2e-67 260.0 290 52.1
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 5.0e-67 258.8 253 59.3
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 6.5e-67 258.5 282 56.0
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 8.0e-65 251.5 291 49.8
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 1.5e-55 220.7 186 68.8
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 2.9e-54 216.5 322 45.0
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 5.0e-43 179.1 124 74.2
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 8.6e-43 178.3 142 69.0
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.1e-40 171.4 148 64.9
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 1.1e-37 161.4 117 75.2
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 3.5e-36 156.4 253 45.8
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 8.1e-33 145.2 116 68.1
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 2.0e-31 140.6 307 34.2
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 6.4e-30 135.6 156 56.4
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 5.2e-24 115.9 108 50.0
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 3.4e-23 113.2 307 27.7
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 4.4e-23 112.8 73 82.2
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.9e-22 110.2 61 88.5
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 1.9e-21 107.5 59 91.5
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 1.9e-21 107.5 326 27.0
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 7.1e-21 105.5 83 66.3
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 2.7e-20 103.6 71 78.9
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 2.4e-16 90.5 65 66.2
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.4e-16 90.5 75 64.0
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 6.9e-16 89.0 54 77.8
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 1.7e-14 84.3 183 32.8
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 3.9e-11 73.2 163 36.8
Zm00001eb086350 Zea mays HOM05D008576 ORTHO05D000385 2.4e-08 63.9 50 72.0
Zm00001eb239900 Zea mays HOM05D004632 ORTHO05D005556 9.0e-08 62.0 50 70.0
Dinv40325 Davidia involucrata HOM05D004632 ORTHO05D005556 2.2e-06 57.4 37 81.1
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 2.9e-06 57.0 248 24.2


User provided reference genes

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