Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.4e-124 446.8 218 100.0
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.0e-109 400.2 230 86.1
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.5e-100 369.0 230 79.6
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 2.0e-89 332.8 227 71.4
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.2e-88 329.3 227 72.2
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.7e-88 328.6 192 83.9
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 1.3e-85 320.1 227 70.0
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 1.4e-82 310.1 227 65.2
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 2.2e-80 302.8 229 64.2
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.4e-79 300.1 230 63.0
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 4.1e-79 298.5 230 63.9
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.4e-79 298.1 220 71.4
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 7.8e-78 294.3 226 62.4
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 2.3e-77 292.7 230 62.6
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 3.9e-77 292.0 227 63.0
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 3.9e-77 292.0 229 64.6
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 5.1e-77 291.6 230 63.0
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 6.6e-77 291.2 230 63.0
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 1.1e-76 290.4 230 63.9
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.9e-76 289.7 230 62.6
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 2.5e-76 289.3 226 62.8
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.5e-76 289.3 230 62.6
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 3.3e-76 288.9 226 62.8
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 1.6e-75 286.6 232 61.6
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 2.1e-75 286.2 223 63.2
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 2.8e-75 285.8 224 62.5
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 3.6e-75 285.4 226 60.6
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 4.7e-75 285.0 218 61.9
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 8.1e-75 284.3 230 62.6
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 1.1e-74 283.9 230 60.0
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 6.9e-74 281.2 226 62.4
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 3.4e-73 278.9 230 59.1
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 7.6e-73 277.7 226 61.5
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 7.6e-73 277.7 227 58.6
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 1.7e-72 276.6 230 60.0
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 3.8e-72 275.4 216 60.6
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 3.8e-72 275.4 230 58.7
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 3.8e-72 275.4 230 58.3
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 3.8e-72 275.4 222 60.8
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 1.4e-71 273.5 225 58.2
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 3.2e-71 272.3 226 59.3
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.6e-70 270.0 231 58.4
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 2.7e-70 269.2 222 59.9
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 3.5e-70 268.9 231 61.5
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 6.0e-70 268.1 226 57.5
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 7.8e-70 267.7 226 57.1
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.0e-69 267.3 226 59.3
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 1.0e-69 267.3 226 58.0
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.3e-69 266.9 223 57.8
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 3.0e-69 265.8 230 59.6
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 3.9e-69 265.4 226 59.3
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 3.9e-69 265.4 222 59.0
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.1e-69 265.0 228 57.0
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 6.6e-69 264.6 226 59.3
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-68 263.8 227 60.4
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 1.1e-68 263.8 230 59.1
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 1.5e-68 263.5 223 57.8
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 1.5e-68 263.5 227 59.9
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 1.5e-68 263.5 226 56.6
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.5e-68 262.7 228 57.5
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 5.6e-68 261.5 227 59.9
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 5.6e-68 261.5 225 55.1
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 7.3e-68 261.2 228 57.5
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.3e-68 261.2 227 59.9
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.3e-67 260.4 227 59.9
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 1.1e-66 257.3 222 56.8
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 1.1e-66 257.3 230 57.8
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 1.1e-66 257.3 226 56.2
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 4.5e-65 251.9 228 55.7
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 9.9e-65 250.8 224 58.0
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 9.3e-63 244.2 200 59.5
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 4.6e-62 241.9 200 58.5
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 1.3e-61 240.4 222 53.2
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 8.7e-61 237.7 225 53.3
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 2.5e-60 236.1 223 52.9
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 2.5e-60 236.1 222 54.1
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 2.5e-60 236.1 228 53.5
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 3.3e-60 235.7 230 51.7
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 5.6e-60 235.0 204 57.8
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 7.4e-60 234.6 223 52.0
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 2.8e-59 232.6 223 52.0
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 4.8e-59 231.9 225 52.9
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 6.2e-59 231.5 225 52.9
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 6.2e-59 231.5 226 51.8
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 8.1e-59 231.1 225 51.6
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.1e-58 229.2 214 59.3
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 6.9e-58 228.0 219 53.0
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 2.6e-57 226.1 225 51.6
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 3.4e-57 225.7 225 51.1
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 4.5e-57 225.3 225 51.6
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 9.9e-57 224.2 223 51.1
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 2.9e-56 222.6 227 52.4
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.8e-56 222.2 218 58.7
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.1e-55 220.7 226 50.4
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.5e-55 218.4 218 58.3
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 9.3e-55 217.6 220 50.9
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 2.5e-52 209.5 144 67.4
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 4.3e-52 208.8 223 48.9
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 4.3e-52 208.8 246 45.1
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 5.6e-52 208.4 225 48.9
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 3.7e-51 205.7 224 49.1
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 5.3e-50 201.8 235 45.1
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.2e-49 200.7 219 46.1
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.3e-48 197.2 235 44.7
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 2.9e-48 196.1 220 46.4
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 3.2e-47 192.6 240 43.8
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.1e-43 179.9 248 41.9
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.1e-42 177.6 248 41.9
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.1e-42 177.6 225 42.7
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 6.9e-42 174.9 225 44.4
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 1.5e-41 173.7 261 39.5
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.7e-40 170.2 242 41.3
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.9e-40 169.5 223 41.7
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.9e-40 169.5 219 38.8
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.1e-39 167.5 227 39.6
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 1.1e-39 167.5 238 38.7
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.2e-39 166.0 232 40.5
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.2e-39 165.6 220 39.1
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 7.9e-38 161.4 227 39.6
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 3.0e-37 159.5 228 38.2
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.9e-37 159.1 190 45.3
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 8.7e-37 157.9 258 36.0
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 1.1e-36 157.5 257 35.0
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 7.4e-36 154.8 258 36.0
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 9.7e-36 154.5 230 40.9
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 1.3e-35 154.1 211 40.8
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 1.6e-35 153.7 257 36.2
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 4.1e-34 149.1 176 43.2
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 1.2e-33 147.5 146 50.0
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 5.9e-33 145.2 171 45.0
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 5.9e-33 145.2 171 45.0
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 1.1e-31 141.0 160 46.2
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 1.1e-31 141.0 151 46.4
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 1.4e-31 140.6 134 50.7
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.2e-30 137.5 142 50.0
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.6e-30 137.1 226 33.6
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 4.6e-30 135.6 187 38.5
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 6.1e-30 135.2 223 38.1
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.9e-30 134.8 142 48.6
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.4e-29 134.0 206 35.0
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 2.6e-28 129.8 224 36.2
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 2.6e-28 129.8 142 47.2
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 7.4e-28 128.3 246 35.0
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 2.8e-27 126.3 208 38.0
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 6.3e-27 125.2 157 38.9
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.8e-26 123.6 146 42.5
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 5.3e-26 122.1 162 39.5
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 3.4e-25 119.4 205 35.1
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 2.2e-24 116.7 154 39.6
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 5.0e-24 115.5 154 37.7
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.4e-21 107.5 140 42.9
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 1.1e-20 104.4 175 36.0
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 3.3e-20 102.8 99 48.5
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 1.7e-19 100.5 102 48.0
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 6.3e-19 98.6 115 46.1
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.2e-17 94.4 215 28.4
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.5e-15 85.5 144 37.5
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.1e-14 83.6 86 55.8
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.7e-14 83.2 95 42.1
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 6.7e-13 78.6 181 26.5
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.7e-11 73.9 65 55.4
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.8e-11 73.2 79 48.1


User provided reference genes

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