Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.3e-47 191.8 91 100.0
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.5e-27 125.9 77 81.8
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.3e-26 122.9 77 80.5
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.7e-26 122.5 77 79.2
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 4.9e-26 120.9 82 73.2
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 6.5e-26 120.6 75 80.0
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.4e-25 119.4 77 75.3
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.4e-25 119.4 77 77.9
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.9e-25 119.0 77 76.6
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 2.5e-25 118.6 75 77.3
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 3.2e-25 118.2 75 77.3
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 4.2e-25 117.9 75 77.3
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 4.2e-25 117.9 75 77.3
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 4.2e-25 117.9 75 77.3
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 5.5e-25 117.5 75 74.7
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 7.1e-25 117.1 75 78.7
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 7.1e-25 117.1 75 77.3
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 9.3e-25 116.7 76 73.7
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 1.6e-24 115.9 75 77.3
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 2.1e-24 115.5 75 76.0
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.1e-24 115.5 75 76.0
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 2.7e-24 115.2 75 76.0
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 2.7e-24 115.2 75 76.0
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.7e-24 115.2 75 73.3
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 3.5e-24 114.8 75 74.7
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 4.6e-24 114.4 75 74.7
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 4.6e-24 114.4 75 72.0
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 6.0e-24 114.0 75 73.3
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 6.0e-24 114.0 75 73.3
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 6.0e-24 114.0 75 74.7
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 6.0e-24 114.0 75 73.3
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 6.0e-24 114.0 75 73.3
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 6.0e-24 114.0 75 73.3
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 6.0e-24 114.0 75 73.3
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 6.0e-24 114.0 75 74.7
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 7.9e-24 113.6 75 73.3
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.9e-24 113.6 75 73.3
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.9e-24 113.6 75 73.3
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.9e-24 113.6 75 73.3
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.9e-24 113.6 75 73.3
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 7.9e-24 113.6 75 73.3
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 7.9e-24 113.6 75 74.7
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 7.9e-24 113.6 75 74.7
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.0e-23 113.2 77 71.4
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.0e-23 113.2 75 76.0
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.0e-23 113.2 75 74.7
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 1.3e-23 112.8 75 74.7
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 1.3e-23 112.8 75 73.3
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.8e-23 112.5 75 73.3
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 1.8e-23 112.5 75 74.7
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.8e-23 112.5 75 74.7
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 2.3e-23 112.1 75 73.3
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.0e-23 111.7 75 72.0
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.0e-23 111.7 75 72.0
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 3.0e-23 111.7 75 72.0
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 3.9e-23 111.3 75 72.0
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 3.9e-23 111.3 75 73.3
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 3.9e-23 111.3 75 72.0
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 5.1e-23 110.9 75 70.7
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 5.1e-23 110.9 75 73.3
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 5.1e-23 110.9 75 72.0
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 6.7e-23 110.5 75 73.3
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 6.7e-23 110.5 75 73.3
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 6.7e-23 110.5 75 73.3
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 6.7e-23 110.5 75 73.3
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 8.7e-23 110.2 75 73.3
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 8.7e-23 110.2 75 70.7
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 8.7e-23 110.2 75 72.0
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 8.7e-23 110.2 75 72.0
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 8.7e-23 110.2 75 72.0
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 1.1e-22 109.8 75 70.7
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.1e-22 109.8 75 72.0
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.1e-22 109.8 75 69.3
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.5e-22 109.4 95 61.1
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.5e-22 109.4 75 70.7
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 1.5e-22 109.4 75 72.0
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.9e-22 109.0 75 70.7
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.9e-22 109.0 75 70.7
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 2.5e-22 108.6 75 72.0
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 2.5e-22 108.6 75 70.7
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 3.3e-22 108.2 75 68.0
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.3e-22 108.2 75 72.0
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 4.3e-22 107.8 75 69.3
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 5.7e-22 107.5 75 70.7
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 5.7e-22 107.5 75 68.0
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 7.4e-22 107.1 75 66.7
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 9.7e-22 106.7 75 72.0
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 9.7e-22 106.7 75 70.7
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 1.3e-21 106.3 75 66.7
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 1.3e-21 106.3 77 67.5
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.6e-21 105.9 75 68.0
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 2.2e-21 105.5 75 66.7
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.8e-21 105.1 75 70.7
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 4.8e-21 104.4 75 69.3
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 8.2e-21 103.6 75 65.3
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.1e-20 103.2 75 68.0
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-20 102.8 75 66.7
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-20 102.8 75 66.7
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 1.8e-20 102.4 75 69.3
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 2.4e-20 102.1 75 65.3
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.1e-20 101.3 115 53.0
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 5.3e-20 100.9 75 68.0
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 6.9e-20 100.5 78 69.2
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 9.0e-20 100.1 70 72.9
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.2e-19 99.8 75 66.7
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.5e-19 99.4 75 66.7
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 2.6e-19 98.6 75 62.7
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 3.4e-19 98.2 75 68.0
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 7.6e-19 97.1 75 66.7
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 7.6e-19 97.1 75 66.7
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.7e-18 95.9 77 63.6
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.9e-18 95.1 80 63.8
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 2.9e-18 95.1 74 63.5
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 2.9e-18 95.1 75 64.0
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 4.2e-17 91.3 60 78.3
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.5e-17 90.9 53 81.1
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 9.3e-17 90.1 76 61.8
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 3.6e-16 88.2 75 61.3
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 1.0e-15 86.7 64 67.2
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.4e-15 86.3 77 57.1
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.8e-15 85.9 75 58.7
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 2.3e-15 85.5 62 67.7
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 4.3e-14 81.3 78 57.7
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 4.3e-14 81.3 78 57.7
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 4.3e-14 81.3 77 55.8
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 5.7e-14 80.9 74 56.8
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 3.4e-11 71.6 55 65.5
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 5.9e-11 70.9 107 43.0
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 5.9e-11 70.9 77 50.6
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.0e-10 70.1 69 55.1
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.3e-10 69.7 63 60.3
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 2.9e-10 68.6 75 56.0
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.5e-09 65.5 55 61.8
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.5e-09 65.5 37 78.4
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 7.2e-09 63.9 65 53.8


User provided reference genes

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