Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 8.8e-113 410.2 196 100.0
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 3.1e-86 322.0 163 93.9
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 3.6e-82 308.5 163 88.3
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 6.8e-81 304.3 163 87.1
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.7e-79 299.7 147 95.9
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 1.1e-78 297.0 163 85.3
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 3.2e-78 295.4 163 85.3
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 7.0e-78 294.3 163 82.2
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 9.2e-78 293.9 163 83.4
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 1.2e-77 293.5 163 82.2
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 2.0e-77 292.7 163 82.8
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 2.7e-77 292.4 163 82.2
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 4.6e-77 291.6 163 81.6
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 1.7e-76 289.7 158 83.5
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 9.5e-75 283.9 158 83.5
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 1.6e-74 283.1 163 81.0
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 1.1e-73 280.4 162 80.9
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 2.6e-72 275.8 163 77.9
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 7.5e-72 274.2 162 77.2
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 1.3e-71 273.5 163 75.5
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 1.7e-71 273.1 163 76.1
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 2.2e-71 272.7 163 74.8
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 2.9e-71 272.3 162 76.5
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 6.4e-71 271.2 163 75.5
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 6.4e-71 271.2 158 77.2
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 6.4e-71 271.2 158 77.8
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 8.3e-71 270.8 163 77.3
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 1.4e-70 270.0 163 74.8
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 1.9e-70 269.6 163 74.8
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.9e-70 269.6 163 77.3
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 2.4e-70 269.2 163 74.8
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 4.1e-70 268.5 163 76.1
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 5.4e-70 268.1 163 76.7
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 5.4e-70 268.1 163 76.7
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 7.0e-70 267.7 163 75.5
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 1.2e-69 266.9 162 77.2
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 2.1e-69 266.2 163 73.6
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 2.7e-69 265.8 163 75.5
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 2.7e-69 265.8 163 74.8
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 2.7e-69 265.8 158 77.2
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 2.7e-69 265.8 163 75.5
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 4.6e-69 265.0 163 76.1
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 4.6e-69 265.0 163 74.8
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 7.8e-69 264.2 163 71.2
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 7.8e-69 264.2 163 71.2
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 1.0e-68 263.8 163 74.2
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 1.0e-68 263.8 163 74.8
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 2.3e-68 262.7 163 70.6
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 3.0e-68 262.3 163 73.6
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 3.0e-68 262.3 163 73.0
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 5.0e-68 261.5 163 73.6
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 5.0e-68 261.5 163 73.6
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 6.6e-68 261.2 163 73.0
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 6.6e-68 261.2 163 73.0
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 8.6e-68 260.8 161 74.5
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 8.6e-68 260.8 163 73.6
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 1.1e-67 260.4 163 74.2
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 1.1e-67 260.4 163 73.0
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 1.5e-67 260.0 163 69.9
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 1.5e-67 260.0 158 72.8
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 3.3e-67 258.8 188 67.0
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.3e-67 258.8 163 73.6
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 3.3e-67 258.8 163 73.6
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 4.3e-67 258.5 163 69.9
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 5.6e-67 258.1 163 73.0
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 7.3e-67 257.7 153 74.5
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 1.2e-66 256.9 158 72.8
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 1.6e-66 256.5 163 71.2
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 2.1e-66 256.1 163 71.8
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 2.1e-66 256.1 163 72.4
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 2.1e-66 256.1 164 75.0
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 2.1e-66 256.1 164 75.6
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 2.8e-66 255.8 163 72.4
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 6.2e-66 254.6 159 74.2
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 1.1e-65 253.8 158 71.5
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 1.8e-65 253.1 158 71.5
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 2.3e-65 252.7 163 71.2
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 2.3e-65 252.7 164 73.8
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 4.0e-65 251.9 163 72.4
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 8.9e-65 250.8 158 70.9
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 1.2e-64 250.4 159 70.4
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 1.2e-64 250.4 163 73.6
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 2.0e-64 249.6 163 68.7
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 2.0e-64 249.6 163 68.7
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 4.4e-64 248.4 162 71.0
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 5.8e-64 248.1 164 72.6
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 5.8e-64 248.1 158 70.3
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 5.8e-64 248.1 166 72.3
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 7.5e-64 247.7 162 71.6
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 7.5e-64 247.7 158 69.6
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 7.5e-64 247.7 158 69.6
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 7.5e-64 247.7 158 69.6
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 7.5e-64 247.7 158 69.6
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 1.3e-63 246.9 158 70.3
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 1.3e-63 246.9 158 70.3
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 1.3e-63 246.9 158 70.3
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 1.3e-63 246.9 158 70.3
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 2.2e-63 246.1 192 59.9
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 2.9e-63 245.7 158 69.0
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 3.7e-63 245.4 158 69.0
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 3.7e-63 245.4 158 69.0
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 3.7e-63 245.4 158 68.4
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 4.9e-63 245.0 158 69.6
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 6.4e-63 244.6 158 69.0
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 5.1e-60 235.0 159 69.8
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 1.9e-59 233.0 166 66.9
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 1.4e-57 226.9 171 61.4
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 3.1e-57 225.7 171 62.0
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 5.8e-56 221.5 138 75.4
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.1e-51 207.2 160 60.0
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.6e-50 203.4 158 58.2
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 4.0e-49 198.7 164 55.5
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 3.8e-39 165.6 159 50.9
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 3.2e-38 162.5 164 47.0
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 1.1e-35 154.1 165 47.3
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 2.5e-35 152.9 158 46.8
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 2.1e-29 133.3 189 41.3
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 6.3e-18 95.1 61 62.3
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 2.6e-16 89.7 152 30.3
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 1.2e-13 80.9 153 29.4
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 1.6e-13 80.5 86 48.8
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 1.4e-12 77.4 79 48.1
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 1.2e-08 64.3 42 64.3
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 1.5e-08 63.9 43 62.8
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 5.9e-08 62.0 45 71.1
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 3.8e-07 59.3 201 23.4


User provided reference genes

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