Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042378 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 0.0e+00 2758.8 1475 100.0
CSS0023493 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 0.0e+00 1925.2 1524 72.8
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 0.0e+00 1831.2 1492 69.4
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 0.0e+00 1807.0 1518 66.5
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 0.0e+00 1751.5 1504 67.6
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 0.0e+00 1632.1 1589 62.0
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 0.0e+00 1471.4 1554 57.0
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 0.0e+00 1449.1 1531 57.8
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 0.0e+00 1432.9 1510 61.5
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 0.0e+00 1411.4 1553 58.1
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 0.0e+00 1393.6 1559 55.0
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 0.0e+00 1371.3 1452 57.6
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 0.0e+00 1349.3 1320 59.5
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 0.0e+00 1336.6 1599 54.8
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 0.0e+00 1335.9 1523 56.8
Actinidia12488 Actinidia chinensis HOM05D003463 ORTHO05D004206 0.0e+00 1320.1 1109 71.7
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 0.0e+00 1310.8 1607 51.2
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 0.0e+00 1303.9 1482 54.7
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 0.0e+00 1302.7 1582 54.4
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 0.0e+00 1302.0 1297 58.5
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 0.0e+00 1301.6 1354 56.7
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 0.0e+00 1300.8 1302 58.5
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 0.0e+00 1297.7 1607 53.3
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 0.0e+00 1293.9 1481 54.8
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 0.0e+00 1293.9 1483 54.3
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 0.0e+00 1290.4 1534 53.1
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 0.0e+00 1283.1 1376 58.3
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 0.0e+00 1276.9 1626 53.9
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 0.0e+00 1265.0 1302 57.6
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 0.0e+00 1251.5 1537 50.9
TWI36G1584 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 0.0e+00 1241.5 1539 52.3
DCAR_021199 Daucus carota HOM05D003463 ORTHO05D004206 0.0e+00 1236.5 1694 48.1
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 0.0e+00 1231.9 1661 52.8
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 0.0e+00 1225.3 1599 52.0
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 0.0e+00 1223.8 1657 52.1
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 0.0e+00 1216.8 1619 49.6
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 0.0e+00 1209.1 1508 52.3
Solyc07g052940.4 Solanum lycopersicum HOM05D003463 ORTHO05D004206 0.0e+00 1209.1 1590 50.2
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 0.0e+00 1208.0 1656 52.1
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 0.0e+00 1205.3 1539 52.7
Sopen07g026490 Solanum pennellii HOM05D003463 ORTHO05D004206 0.0e+00 1204.1 1595 49.8
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 0.0e+00 1202.6 1522 54.0
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 0.0e+00 1198.0 1656 51.3
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 0.0e+00 1196.8 1370 52.5
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 0.0e+00 1194.5 1481 53.5
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 0.0e+00 1190.6 1573 48.5
Sc21g0001820 Simmondsia chinensis HOM05D003463 ORTHO05D004206 0.0e+00 1190.6 1524 48.0
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 0.0e+00 1188.3 1562 51.0
Hund08062 Selenicereus undatus HOM05D003463 ORTHO05D004206 0.0e+00 1187.6 1545 49.6
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 0.0e+00 1186.0 1539 52.0
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 0.0e+00 1182.2 1527 50.6
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 0.0e+00 1181.0 1585 47.8
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 0.0e+00 1180.6 1536 50.2
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 0.0e+00 1178.7 1538 49.2
Glyma.13G305000 Glycine max HOM05D003463 ORTHO05D004206 0.0e+00 1178.7 1555 49.3
MELO3C018791.2 Cucumis melo HOM05D003463 ORTHO05D004206 0.0e+00 1176.0 1521 51.5
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 0.0e+00 1176.0 1353 52.4
CsaV3_7G003880 Cucumis sativus L. HOM05D003463 ORTHO05D004206 0.0e+00 1174.5 1520 51.6
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 0.0e+00 1173.7 1753 48.8
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 0.0e+00 1170.2 1335 54.1
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 0.0e+00 1167.5 1550 49.7
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 0.0e+00 1167.5 1579 50.3
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 0.0e+00 1165.6 1547 48.5
Glyma.12G196800 Glycine max HOM05D003463 ORTHO05D004206 0.0e+00 1159.1 1538 50.3
Eucgr.A01739 Eucalyptus grandis HOM05D003463 ORTHO05D004206 0.0e+00 1157.1 1577 48.8
Sed0018482 Sechium edule HOM05D003463 ORTHO05D004206 0.0e+00 1152.5 1515 49.4
TAR627G1072 Trochodendron aralioides HOM05D003463 ORTHO05D004206 0.0e+00 1152.1 1029 58.7
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 0.0e+00 1149.4 1580 46.8
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 0.0e+00 1148.7 1523 51.7
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 0.0e+00 1143.6 1611 48.4
EL10Ac9g22340 Beta vulgaris HOM05D003463 ORTHO05D004206 0.0e+00 1142.1 1529 51.5
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 0.0e+00 1142.1 1533 45.9
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 0.0e+00 1135.6 1513 49.0
DCAR_009696 Daucus carota HOM05D003463 ORTHO05D004206 0.0e+00 1135.2 1493 47.2
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 0.0e+00 1121.7 1491 51.5
Sed0025509 Sechium edule HOM05D003463 ORTHO05D004206 0.0e+00 1117.1 1530 50.5
Lj3g0021154 Lotus japonicus HOM05D003463 ORTHO05D004206 0.0e+00 1105.1 1545 48.3
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 0.0e+00 1103.2 1579 46.5
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 0.0e+00 1100.1 1506 49.5
SGA_v2.0_scaffold34G13880 Striga asiatica HOM05D003463 ORTHO05D004206 0.0e+00 1095.9 1538 45.3
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 0.0e+00 1089.7 1679 44.5
Cpa.g.sc8.254 Carica papaya HOM05D003463 ORTHO05D004206 0.0e+00 1078.5 1570 48.3
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 2.9e-309 1065.8 1579 46.0
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 3.2e-308 1062.4 1513 49.9
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 2.7e-307 1059.3 1337 47.4
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 6.3e-304 1048.1 1501 44.6
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 1.2e-302 1043.9 1573 45.9
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 1.9e-300 1036.6 1573 45.4
Thhalv10024183m.g Eutrema salsugineum HOM05D003463 ORTHO05D004206 4.2e-300 1035.4 1579 44.5
Sp7g13400 Schrenkiella parvula HOM05D003463 ORTHO05D004206 7.9e-299 1031.2 1573 42.6
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 9.1e-295 1017.7 1608 46.2
Aa31LG8G8660 Aethionema arabicum HOM05D003463 ORTHO05D004206 5.0e-293 1011.9 1571 44.0
BcaB02g07835 Brassica carinata HOM05D003463 ORTHO05D004206 8.5e-293 1011.1 1559 42.1
AL7G40500 Arabidopsis lyrata HOM05D003463 ORTHO05D004206 1.2e-291 1007.3 1303 45.3
A05p17060 Brassica napus HOM05D003463 ORTHO05D004206 1.8e-290 1003.4 1558 41.8
BraA05t20607Z Brassica rapa HOM05D003463 ORTHO05D004206 1.8e-290 1003.4 1558 41.8
Ah.01g005040 Amaranthus hybridus HOM05D003463 ORTHO05D004206 7.4e-289 998.0 1541 44.6
BcaC08g44245 Brassica carinata HOM05D003463 ORTHO05D004206 2.8e-288 996.1 1557 41.6
C06p16490 Brassica napus HOM05D003463 ORTHO05D004206 6.3e-288 995.0 1557 41.6
BolC6t36852H Brassica oleracea HOM05D003463 ORTHO05D004206 6.3e-288 995.0 1557 41.6
BcaNung00300 Brassica carinata HOM05D003463 ORTHO05D004206 6.5e-285 984.9 1484 42.8
BraA01t02149Z Brassica rapa HOM05D003463 ORTHO05D004206 6.5e-285 984.9 1563 41.8
A01p22340 Brassica napus HOM05D003463 ORTHO05D004206 5.5e-284 981.9 1561 41.7
CARHR221910 Cardamine hirsuta HOM05D003463 ORTHO05D004206 9.4e-284 981.1 1566 41.6
C01p27890 Brassica napus HOM05D003463 ORTHO05D004206 5.7e-281 971.8 1532 42.3
BolC1t02722H Brassica oleracea HOM05D003463 ORTHO05D004206 2.8e-280 969.5 1532 42.2
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 1.4e-279 967.2 931 55.2
BcaC09g50202 Brassica carinata HOM05D003463 ORTHO05D004206 1.5e-276 957.2 1538 41.5
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 9.4e-276 954.5 935 53.6
AT4G15180 Arabidopsis thaliana HOM05D003463 ORTHO05D004206 3.2e-268 929.5 1564 41.2
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 1.0e-229 801.6 654 64.2
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 3.9e-229 799.7 959 47.5
Zm00001eb413080 Zea mays HOM05D003463 ORTHO05D004206 4.3e-220 769.6 948 45.3
Zm00001eb171790 Zea mays HOM05D003463 ORTHO05D004206 1.6e-211 741.1 952 44.3
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 2.4e-202 710.7 932 44.0
ATR0804G005 Amborella trichopoda HOM05D003463 ORTHO05D004206 1.5e-201 708.0 1374 39.0
unitig_8.g4614 Utricularia gibba HOM05D003463 ORTHO05D004206 2.1e-166 591.3 691 47.2
SHI10284 Sapria himalayana HOM05D003463 ORTHO05D004206 1.3e-147 528.9 1212 38.9
HPP92_004145 Vanilla planifolia HOM05D003463 ORTHO05D004206 7.0e-146 523.1 1533 34.4
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 1.2e-145 522.3 347 76.4
Actinidia27019 Actinidia chinensis HOM05D003463 ORTHO05D004206 6.1e-142 510.0 342 75.7
Actinidia27020 Actinidia chinensis HOM05D003463 ORTHO05D026297 1.6e-97 362.5 500 65.8
SEGI_02831 Sequoiadendron giganteum HOM05D003463 ORTHO05D004206 7.3e-95 353.6 1135 27.7
TPR.G33076 Trifolium pratense HOM05D003463 ORTHO05D004206 6.5e-75 287.3 920 37.1
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.4e-69 269.6 349 44.7
Lj1C750T6 Lonicera japonica HOM05D003463 ORTHO05D004206 3.2e-50 205.3 139 75.5
Mapoly0021s0105 Marchantia polymorpha HOM05D003463 ORTHO05D004206 5.5e-50 204.5 1107 24.0
unitig_8.g4613 Utricularia gibba HOM05D003463 ORTHO05D004206 3.3e-47 195.3 166 59.0
SHI10282 Sapria himalayana HOM05D003463 ORTHO05D004206 2.5e-42 179.1 245 42.4
SMO365G0046 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 3.0e-40 172.2 575 24.9
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 2.7e-36 159.1 152 56.6
Zm00001eb053980 Zea mays HOM05D003463 ORTHO05D004206 5.9e-36 157.9 169 47.9
Pp3c7_5929 Physcomitrium patens HOM05D003463 ORTHO05D004206 1.3e-35 156.8 641 25.3
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 2.9e-35 155.6 134 61.2
Zm00001eb427860 Zea mays HOM05D003463 ORTHO05D004206 2.9e-35 155.6 169 47.3
Pp3c7_5920 Physcomitrium patens HOM05D003463 ORTHO05D004206 3.2e-34 152.1 758 24.4
SMO135G0001 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 7.2e-34 151.0 491 25.3
Lj1P750T17 Lonicera japonica HOM05D003463 ORTHO05D004206 1.2e-33 150.2 185 55.1
Lj1A750T32 Lonicera japonica HOM05D003463 ORTHO05D004206 2.3e-32 146.0 379 32.2
Aa31LG9G1440 Aethionema arabicum HOM05D003463 ORTHO05D000047 4.4e-31 141.7 190 44.7
Pp3c11_18840 Physcomitrium patens HOM05D003463 ORTHO05D004206 6.3e-30 137.9 544 24.6
SHI10283 Sapria himalayana HOM05D003463 ORTHO05D004206 1.2e-25 123.6 121 50.4
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 9.8e-23 114.0 143 46.2
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 9.8e-23 114.0 143 46.2
AagrBONN_evm.TU.Sc2ySwM_117.2770 Anthoceros agrestis HOM05D003463 ORTHO05D004206 3.3e-18 99.0 535 23.7
GSVIVG01026194001 Vitis vinifera HOM05D003463 ORTHO05D004206 9.5e-18 97.4 112 49.1
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 3.6e-17 95.5 139 44.6
Psat3g206120 Pisum sativum HOM05D003463 ORTHO05D004206 1.8e-16 93.2 114 42.1
SHI35802 Sapria himalayana HOM05D000049 ORTHO05D000027 4.9e-14 85.1 103 48.5
CBR_g54148 Chara braunii HOM05D003463 ORTHO05D004206 4.1e-13 82.0 129 33.3
unitig_8.g4612 Utricularia gibba HOM05D003463 ORTHO05D026297 1.6e-12 80.1 126 46.0
Medtr5g037343 Medicago truncatula HOM05D003463 ORTHO05D004206 1.5e-10 73.6 151 31.1
Psat7g124560 Pisum sativum HOM05D003463 ORTHO05D030491 9.5e-10 70.9 92 47.8
Lj1A751G18 Lonicera japonica HOM05D014456 ORTHO05D011476 1.2e-09 70.5 82 56.1
SHI51163 Sapria himalayana HOM05D000049 ORTHO05D000027 2.8e-09 69.3 101 46.5
SHI05209 Sapria himalayana HOM05D000624 ORTHO05D004206 6.2e-09 68.2 65 52.3
TAR627G0797 Trochodendron aralioides HOM05D003463 ORTHO05D026297 4.0e-08 65.5 123 41.5
Nn1g00832 Nelumbo nucifera HOM05D003463 ORTHO05D026297 3.4e-07 62.4 80 48.8
Zm00001eb419290 Zea mays HOM05D003463 ORTHO05D004206 5.8e-07 61.6 52 53.8


User provided reference genes

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