Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 0.0e+00 1987.2 1798 100.0
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.5e-166 592.0 1806 38.5
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 4.4e-150 537.3 1774 39.2
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 4.2e-145 520.8 1814 34.6
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 4.7e-136 490.7 1803 34.0
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 6.3e-133 480.3 1937 32.8
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 8.6e-122 443.4 1893 36.6
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.6e-120 439.1 1667 30.1
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 4.3e-113 414.5 775 41.7
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 9.5e-113 413.3 903 43.4
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.5e-110 406.0 1877 32.9
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 2.3e-106 392.1 1861 36.8
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 6.6e-106 390.6 1854 31.2
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 3.2e-100 371.7 1792 28.9
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 1.2e-99 369.8 622 47.4
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 5.1e-98 364.4 1883 33.2
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 8.7e-98 363.6 530 48.7
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 4.7e-96 357.8 1892 37.3
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 1.4e-95 356.3 511 52.8
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 2.9e-93 348.6 1902 30.4
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 2.9e-93 348.6 527 46.3
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 5.4e-92 344.4 1933 30.9
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 6.0e-91 340.9 518 48.1
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 7.3e-89 334.0 1877 31.3
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 9.6e-89 333.6 1935 30.3
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 1.1e-87 330.1 1536 30.3
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 1.5e-86 326.2 508 53.3
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 9.9e-86 323.6 1922 29.4
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 1.7e-85 322.8 1836 30.4
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 3.2e-84 318.5 1989 29.7
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 5.4e-84 317.8 473 52.2
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 9.3e-84 317.0 1887 31.1
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 2.1e-83 315.8 1886 31.2
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 7.9e-83 313.9 1877 29.8
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 2.3e-82 312.4 518 43.6
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 6.7e-82 310.8 1734 30.9
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 6.7e-82 310.8 1939 30.0
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 1.9e-81 309.3 1934 31.4
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 6.2e-80 304.3 515 48.2
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 6.9e-79 300.8 2009 31.5
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 1.5e-78 299.7 518 42.9
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 5.8e-78 297.7 1936 30.4
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 1.3e-77 296.6 518 44.6
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 1.7e-77 296.2 366 56.3
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.2e-75 290.0 1938 27.2
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.0e-74 287.0 623 44.8
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 6.7e-74 284.3 1870 30.2
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 1.5e-73 283.1 576 45.1
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 4.3e-73 281.6 1915 27.3
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 8.2e-72 277.3 1938 29.1
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 4.5e-70 271.6 1893 28.7
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 2.2e-69 269.2 777 40.5
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 2.9e-69 268.9 555 38.2
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 4.9e-69 268.1 616 38.5
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 6.5e-69 267.7 581 45.6
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.5e-68 265.8 581 45.8
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 1.6e-67 263.1 365 48.5
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 4.6e-67 261.5 542 40.6
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.8e-66 259.6 651 35.2
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 5.1e-66 258.1 553 49.2
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.3e-65 255.0 542 38.9
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 5.7e-65 254.6 512 44.5
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 6.9e-63 247.7 555 37.8
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.2e-62 246.9 557 42.9
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 1.2e-62 246.9 515 44.3
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 2.0e-62 246.1 518 38.6
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.4e-62 245.4 645 34.3
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 7.7e-62 244.2 517 43.5
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.5e-60 238.0 380 44.7
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.1e-59 236.1 553 37.1
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 3.3e-57 228.8 315 50.2
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 4.3e-57 228.4 527 41.9
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 1.7e-56 226.5 617 35.3
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.8e-55 223.0 615 33.8
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 2.4e-55 222.6 549 39.2
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 2.6e-54 219.2 555 37.1
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.2e-53 216.1 555 36.8
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.2e-53 216.1 555 36.8
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.9e-53 215.7 553 35.4
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 5.0e-53 214.9 520 52.9
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 4.2e-52 211.8 1949 28.3
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 9.4e-52 210.7 1878 25.2
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 1.6e-51 209.9 702 32.6
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 7.9e-51 207.6 1936 30.6
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 1.8e-50 206.5 328 45.4
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 2.3e-50 206.1 302 44.4
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 3.9e-50 205.3 812 29.2
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 5.1e-50 204.9 366 41.3
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 2.8e-48 199.1 515 39.2
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 2.8e-48 199.1 366 42.3
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 1.1e-47 197.2 540 41.1
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 1.7e-45 189.9 255 50.2
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 6.1e-43 181.4 1874 30.4
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 6.7e-42 177.9 1880 28.9
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.0e-41 176.4 341 41.6
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 1.4e-39 170.2 272 44.5
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.8e-39 169.9 239 49.4
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 1.2e-38 167.2 1878 27.5
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.5e-38 165.2 204 60.3
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 4.5e-38 165.2 715 28.0
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 1.0e-37 164.1 238 48.3
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 1.0e-37 164.1 372 36.6
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 2.9e-37 162.5 240 47.9
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.1e-36 160.6 220 45.5
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 6.1e-35 154.8 307 40.4
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 3.7e-32 145.6 754 26.0
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 1.4e-31 143.7 396 35.6
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 7.0e-31 141.4 522 30.8
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 2.7e-30 139.4 760 26.3
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 5.9e-30 138.3 234 45.7
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.7e-29 136.7 212 44.3
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.8e-29 135.6 166 59.6
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 7.2e-28 131.3 456 36.8
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 8.0e-27 127.9 378 34.9
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 6.8e-26 124.8 485 31.3
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 1.5e-25 123.6 298 33.6
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 7.5e-25 121.3 170 47.6
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 3.7e-24 119.0 216 38.4
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 6.3e-24 118.2 174 43.1
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 6.3e-24 118.2 174 43.1
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 6.3e-24 118.2 232 45.7
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 4.1e-23 115.5 356 34.6
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 5.4e-23 115.2 238 39.5
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 5.4e-23 115.2 160 44.4
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 5.9e-22 111.7 186 47.3
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 2.3e-21 109.8 143 50.3
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 2.3e-21 109.8 143 50.3
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 2.3e-21 109.8 143 50.3
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.9e-20 106.7 206 39.3
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 1.2e-19 104.0 206 41.3
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 2.8e-19 102.8 177 46.3
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 8.0e-19 101.3 147 42.9
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.4e-18 100.5 496 28.2
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 4.0e-18 99.0 175 44.0
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 6.8e-18 98.2 118 57.6
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 8.9e-18 97.8 352 26.7
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 1.2e-17 97.4 173 46.2
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 3.4e-17 95.9 151 48.3
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.2e-16 93.2 202 35.6
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.7e-16 92.4 202 35.6
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 7.0e-15 88.2 165 40.6
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 4.5e-14 85.5 89 61.8
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 4.3e-12 79.0 206 32.0
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 4.3e-12 79.0 216 31.0
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 5.6e-12 78.6 179 39.7
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.6e-11 77.0 193 32.6
Oeu016857.1 Olea europaea HOM05D003806 ORTHO05D004346 1.4e-10 73.9 53 69.8
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 6.8e-10 71.6 473 38.9
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.2e-09 70.9 239 30.5
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 1.5e-09 70.5 87 50.6
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 2.6e-09 69.7 206 33.5
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 4.4e-09 68.9 281 29.5
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.8e-09 68.6 197 29.9
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 7.5e-09 68.2 52 71.2
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.7e-08 67.0 69 55.1
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 3.7e-08 65.9 327 27.2
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 5.4e-07 62.0 70 58.6
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 9.2e-07 61.2 209 32.1
CDE06G0101 Ceratophyllum demersum HOM05D042561 ORTHO05D004346 9.2e-07 61.2 145 33.8
Cc04_g04110 Coffea canephora HOM05D003806 ORTHO05D004346 2.0e-06 60.1 55 67.3
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 2.7e-06 59.7 595 23.2
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 3.5e-06 59.3 183 32.2


User provided reference genes

Program Settings