Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 5.7e-52 207.2 99 100.0
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 6.3e-43 177.2 100 87.0
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 2.3e-40 168.7 98 84.7
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 2.8e-38 161.8 95 83.2
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 4.4e-36 154.5 94 79.8
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 9.8e-36 153.3 94 78.7
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 9.8e-36 153.3 149 57.0
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 2.2e-35 152.1 96 76.0
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 2.8e-35 151.8 92 79.3
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 3.7e-35 151.4 96 76.0
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 8.3e-35 150.2 97 74.2
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 8.3e-35 150.2 94 79.8
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 1.4e-34 149.4 95 75.8
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.8e-34 149.1 97 73.2
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 2.4e-34 148.7 93 76.3
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 2.4e-34 148.7 95 74.7
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 2.4e-34 148.7 96 74.0
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 1.2e-33 146.4 92 76.1
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 3.5e-33 144.8 95 73.7
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 4.5e-33 144.4 94 73.4
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 4.5e-33 144.4 94 76.6
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 4.5e-33 144.4 92 75.0
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 4.5e-33 144.4 92 75.0
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 5.9e-33 144.1 94 75.5
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 5.9e-33 144.1 96 71.9
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 7.8e-33 143.7 94 75.5
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 7.8e-33 143.7 96 70.8
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 1.3e-32 142.9 96 70.8
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 1.7e-32 142.5 96 70.8
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 1.7e-32 142.5 96 70.8
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 2.3e-32 142.1 97 70.1
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 2.3e-32 142.1 96 71.9
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 2.9e-32 141.7 94 72.3
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 2.9e-32 141.7 94 72.3
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 2.9e-32 141.7 94 72.3
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 2.9e-32 141.7 94 72.3
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 2.9e-32 141.7 94 72.3
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 3.8e-32 141.4 94 73.4
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 3.8e-32 141.4 96 70.8
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 6.6e-32 140.6 96 69.8
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 6.6e-32 140.6 96 69.8
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 6.6e-32 140.6 96 69.8
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 1.5e-31 139.4 95 71.6
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 1.9e-31 139.0 92 73.9
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 2.5e-31 138.7 96 71.9
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 4.3e-31 137.9 96 70.8
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 4.3e-31 137.9 99 69.7
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 4.3e-31 137.9 96 69.8
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 5.6e-31 137.5 96 69.8
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 7.3e-31 137.1 94 71.3
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 7.3e-31 137.1 94 71.3
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 7.3e-31 137.1 98 72.4
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 1.6e-30 136.0 91 73.6
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 2.1e-30 135.6 93 69.9
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 2.8e-30 135.2 94 73.4
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 6.1e-30 134.0 93 69.9
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 8.0e-30 133.7 94 70.2
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 1.0e-29 133.3 96 67.7
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 1.4e-29 132.9 93 71.0
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 1.8e-29 132.5 102 67.6
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.8e-29 132.5 95 67.4
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 1.8e-29 132.5 96 66.7
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 2.3e-29 132.1 96 66.7
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 2.3e-29 132.1 94 70.2
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 4.0e-29 131.3 92 69.6
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 6.8e-29 130.6 95 65.3
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 6.8e-29 130.6 134 53.0
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 6.8e-29 130.6 96 67.7
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 8.9e-29 130.2 92 68.5
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 1.5e-28 129.4 97 68.0
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 2.6e-28 128.6 95 66.3
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 2.6e-28 128.6 96 67.7
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 5.7e-28 127.5 92 64.1
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 3.7e-27 124.8 96 62.5
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 6.4e-27 124.0 92 65.2
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 6.4e-27 124.0 96 64.6
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 1.8e-26 122.5 92 64.1
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 7.0e-26 120.6 99 66.7
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 2.0e-25 119.0 167 41.9
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 2.0e-25 119.0 96 64.6
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.7e-25 118.6 86 65.1
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 1.0e-24 116.7 90 63.3
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 1.7e-24 115.9 68 76.5
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 5.0e-24 114.4 98 61.2
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 6.6e-24 114.0 103 56.3
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 6.6e-24 114.0 79 72.2
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 1.5e-23 112.8 90 63.3
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 3.3e-23 111.7 97 62.9
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 2.1e-22 109.0 92 59.8
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 3.4e-20 101.7 94 59.6
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 2.2e-19 99.0 96 56.2
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 2.2e-19 99.0 50 82.0
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 6.4e-19 97.4 69 76.8
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 2.4e-18 95.5 49 87.8
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 4.1e-18 94.7 49 81.6
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 1.6e-17 92.8 67 71.6
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 3.5e-17 91.7 54 75.9
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 4.6e-17 91.3 65 69.2
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.3e-16 89.7 49 75.5
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 3.0e-16 88.6 71 57.7
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 1.1e-15 86.7 67 64.2
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 3.6e-14 81.6 63 63.5
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 4.4e-12 74.7 52 75.0
Haze_08759 Corylus avellana HOM05D007428 ORTHO05D009308 6.6e-08 60.8 28 92.9
HanXRQChr17g0533231 Helianthus annuus HOM05D007428 ORTHO05D009308 2.1e-06 55.8 61 59.0
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 3.6e-06 55.1 44 65.9


User provided reference genes

Program Settings