Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042203 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 2.1e-67 259.2 164 100.0
CSS0028945 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 5.9e-62 241.1 164 95.1
Rhsim09G0197900 Rhododendron simsii HOM05D000368 ORTHO05D009348 1.9e-36 156.4 149 74.5
PSO063G1784 Papaver somniferum HOM05D000368 ORTHO05D009348 2.2e-32 142.9 150 71.3
Actinidia31822 Actinidia chinensis HOM05D000368 ORTHO05D009348 2.4e-31 139.4 154 70.8
Sopen03g004560 Solanum pennellii HOM05D000368 ORTHO05D009348 3.2e-31 139.0 149 71.8
PGSC0003DMG402014344 Solanum tuberosum HOM05D000368 ORTHO05D009348 5.4e-31 138.3 149 71.8
Solyc03g025740.4 Solanum lycopersicum HOM05D000368 ORTHO05D009348 7.0e-31 137.9 149 71.1
vmacro09836 Vaccinium macrocarpon HOM05D000368 ORTHO05D000289 7.0e-31 137.9 149 71.1
Manes.14G025600 Manihot esculenta HOM05D000368 ORTHO05D009348 9.2e-31 137.5 151 70.2
MELO3C006911.2 Cucumis melo HOM05D000368 ORTHO05D009348 3.5e-30 135.6 149 71.1
Eucgr.K00263 Eucalyptus grandis HOM05D000368 ORTHO05D009348 6.0e-30 134.8 149 69.1
PSO782G2079 Papaver somniferum HOM05D000368 ORTHO05D009348 2.3e-29 132.9 150 68.7
Ciclev10005579m.g Citrus clementina HOM05D000368 ORTHO05D009348 3.9e-29 132.1 152 67.8
Cc02_g02880 Coffea canephora HOM05D000368 ORTHO05D009348 3.9e-29 132.1 150 58.0
Dinv35216 Davidia involucrata HOM05D000368 ORTHO05D000289 3.9e-29 132.1 154 61.7
CsaV3_3G017130 Cucumis sativus L. HOM05D000368 ORTHO05D009348 5.0e-29 131.7 149 70.5
ECA238G2658 Erigeron canadensis HOM05D000368 ORTHO05D000289 5.0e-29 131.7 149 67.1
Sed0010584 Sechium edule HOM05D000368 ORTHO05D009348 5.0e-29 131.7 150 70.7
DCAR_020244 Daucus carota HOM05D000368 ORTHO05D009348 6.6e-29 131.3 130 67.7
Potri.015G144600 Populus trichocarpa HOM05D000368 ORTHO05D009348 6.6e-29 131.3 149 68.5
TAR629G3168 Trochodendron aralioides HOM05D000368 ORTHO05D009348 1.1e-28 130.6 151 68.2
HanXRQChr07g0207001 Helianthus annuus HOM05D000368 ORTHO05D009348 5.6e-28 128.3 149 67.1
GSVIVG01028962001 Vitis vinifera HOM05D000368 ORTHO05D009348 5.6e-28 128.3 150 67.3
Hma1.2p1_0270F.1_g107970 Hydrangea macrophylla HOM05D000368 ORTHO05D009348 1.6e-27 126.7 129 68.2
Sabra15G0154200 Salix brachista HOM05D000368 ORTHO05D009348 2.1e-27 126.3 149 68.5
Dinv28433 Davidia involucrata HOM05D000368 ORTHO05D009348 3.6e-27 125.6 131 64.9
QL09p014019 Quercus lobata HOM05D000368 ORTHO05D009348 4.7e-27 125.2 150 66.7
Cfa008323 Carpinus fangiana HOM05D000368 ORTHO05D009348 6.2e-27 124.8 151 66.9
Haze_13700 Corylus avellana HOM05D000368 ORTHO05D009348 6.2e-27 124.8 151 66.2
Ah.13g068650 Amaranthus hybridus HOM05D000368 ORTHO05D009348 1.4e-26 123.6 149 55.0
ClCG05G008070 Citrullus lanatus HOM05D000368 ORTHO05D009348 1.8e-26 123.2 151 68.2
EL10Ac3g05631 Beta vulgaris HOM05D000368 ORTHO05D009348 3.1e-26 122.5 149 61.1
Lsat_1_v5_gn_2_132381 Lactuca sativa HOM05D000368 ORTHO05D009348 3.1e-26 122.5 149 63.1
CiPaw.04G071400 Carya illinoinensis HOM05D000368 ORTHO05D009348 4.0e-26 122.1 149 65.1
Prupe.2G295100 Prunus persica HOM05D000368 ORTHO05D009348 4.0e-26 122.1 149 57.0
AT5G52380 Arabidopsis thaliana HOM05D000368 ORTHO05D009348 5.2e-26 121.7 149 63.1
Potri.012G141700 Populus trichocarpa HOM05D000368 ORTHO05D009348 5.2e-26 121.7 149 66.4
Hund11743 Selenicereus undatus HOM05D000368 ORTHO05D009348 5.2e-26 121.7 149 65.1
Aqoxy5G04003 Aquilegia oxysepala HOM05D000368 ORTHO05D009348 1.2e-25 120.6 156 65.4
FAN01G1188 Fragaria x ananassa HOM05D000368 ORTHO05D009348 1.5e-25 120.2 149 53.0
Phvul.007G070700 Phaseolus vulgaris HOM05D000368 ORTHO05D009348 2.0e-25 119.8 149 54.4
Nn1g01474 Nelumbo nucifera HOM05D000368 ORTHO05D009348 4.4e-25 118.6 153 66.7
Atru.BG.181.p Acer truncatum HOM05D000368 ORTHO05D009348 1.7e-24 116.7 100 62.0
Atru.chr1.452 Acer truncatum HOM05D000368 ORTHO05D009348 1.7e-24 116.7 100 62.0
FvH4_7g29542 Fragaria vesca HOM05D000368 ORTHO05D009348 1.7e-24 116.7 149 53.0
FAN06G0492 Fragaria x ananassa HOM05D000368 ORTHO05D009348 1.7e-24 116.7 149 53.0
FAN06G1486 Fragaria x ananassa HOM05D000368 ORTHO05D009348 1.7e-24 116.7 149 53.0
Gohir.D12G258500 Gossypium hirsutum HOM05D000368 ORTHO05D009348 1.7e-24 116.7 154 56.5
Gorai.008G276900 Gossypium raimondii HOM05D000368 ORTHO05D009348 1.7e-24 116.7 154 56.5
AL8G26780 Arabidopsis lyrata HOM05D000368 ORTHO05D009348 2.9e-24 115.9 149 60.4
Sp6g14600 Schrenkiella parvula HOM05D000368 ORTHO05D000289 3.7e-24 115.5 127 59.8
Thecc.03G177600 Theobroma cacao HOM05D000368 ORTHO05D009348 3.7e-24 115.5 153 61.4
Dinv24555 Davidia involucrata HOM05D000368 ORTHO05D009348 4.9e-24 115.2 106 58.5
Nitab4.5_0002117g0050 Nicotiana tabacum HOM05D000368 ORTHO05D009348 1.9e-23 113.2 149 62.4
Aa31LG3G8750 Aethionema arabicum HOM05D000368 ORTHO05D009348 3.2e-23 112.5 149 59.1
Carub.0008s1248 Capsella rubella HOM05D000368 ORTHO05D009348 3.2e-23 112.5 149 61.7
arahy.Tifrunner.gnm1.ann1.HM7G91 Arachis hypogaea HOM05D000368 ORTHO05D009348 4.1e-23 112.1 110 55.5
VMungo0720G3173 Vigna mungo HOM05D000368 ORTHO05D009348 4.1e-23 112.1 102 60.8
TPR.G27005 Trifolium pratense HOM05D000368 ORTHO05D009348 5.4e-23 111.7 149 45.6
A03p15700 Brassica napus HOM05D000368 ORTHO05D000289 9.2e-23 110.9 102 60.8
Thhalv10014379m.g Eutrema salsugineum HOM05D000368 ORTHO05D009348 1.2e-22 110.5 102 58.8
C03p18350 Brassica napus HOM05D000368 ORTHO05D000289 1.6e-22 110.2 102 60.8
arahy.Tifrunner.gnm1.ann1.C4Z81U Arachis hypogaea HOM05D000368 ORTHO05D009348 2.1e-22 109.8 111 54.1
MBI17_g19093_MAGBIO Magnolia biondii HOM05D000368 ORTHO05D009348 2.1e-22 109.8 105 59.0
BolC3t14232H Brassica oleracea HOM05D000368 ORTHO05D000289 2.7e-22 109.4 102 59.8
BraA03t10861Z Brassica rapa HOM05D000368 ORTHO05D000289 2.7e-22 109.4 102 58.8
Lalb_Chr21g0305051 Lupinus albus HOM05D000368 ORTHO05D009348 3.5e-22 109.0 102 57.8
MD07G1269700 Malus domestica HOM05D000368 ORTHO05D009348 3.5e-22 109.0 149 51.0
RcHm_v2.0_Chr1g0377401 Rosa chinensis HOM05D000368 ORTHO05D009348 3.5e-22 109.0 152 51.3
MSTRG.8734 Avicennia marina HOM05D000368 ORTHO05D009348 4.6e-22 108.6 149 62.4
CANSAT21G1838 Cannabis sativa HOM05D000368 ORTHO05D009348 6.0e-22 108.2 149 62.4
Gohir.A12G257200 Gossypium hirsutum HOM05D000368 ORTHO05D009348 7.8e-22 107.8 154 55.2
Sc19g0001470 Simmondsia chinensis HOM05D000368 ORTHO05D009348 1.3e-21 107.1 150 64.0
Ca_10757_v3 Cicer arietinum L. HOM05D000368 ORTHO05D009348 1.7e-21 106.7 149 43.6
Lj5g0009535 Lotus japonicus HOM05D000368 ORTHO05D009348 1.7e-21 106.7 149 61.7
CARHR265330 Cardamine hirsuta HOM05D000368 ORTHO05D009348 3.0e-21 105.9 149 58.4
Cpa.g.sc107.59 Carica papaya HOM05D000368 ORTHO05D009348 3.0e-21 105.9 150 58.7
THA.LOC104811975 Tarenaya hassleriana HOM05D000368 ORTHO05D009348 6.6e-21 104.8 149 53.7
HPP92_018588 Vanilla planifolia HOM05D000368 ORTHO05D009348 6.6e-21 104.8 105 52.4
TWI39G0209 Tripterygium wilfordii HOM05D000368 ORTHO05D009348 8.6e-21 104.4 149 59.7
HPP92_006518 Vanilla planifolia HOM05D000368 ORTHO05D009348 3.3e-20 102.4 105 51.4
PGR142G2510 Punica granatum HOM05D000368 ORTHO05D009348 7.3e-20 101.3 151 59.6
Zm00001eb074410 Zea mays HOM05D000368 ORTHO05D009348 1.2e-19 100.5 102 54.9
SGA_v2.0_scaffold44G16725 Striga asiatica HOM05D000368 ORTHO05D009348 2.1e-19 99.8 148 60.8
Migut.F00336 Erythranthe guttata HOM05D000368 ORTHO05D009348 4.7e-19 98.6 149 59.1
C09p41730 Brassica napus HOM05D000368 ORTHO05D000289 6.8e-18 94.7 101 52.5
BolC9t57061H Brassica oleracea HOM05D000368 ORTHO05D009348 6.8e-18 94.7 101 52.5
Glyma.20G159100 Glycine max HOM05D000368 ORTHO05D009348 1.2e-17 94.0 149 51.7
MD01G1201700 Malus domestica HOM05D000368 ORTHO05D009348 4.4e-17 92.0 149 48.3
FAN10G1519 Fragaria x ananassa HOM05D000368 ORTHO05D009348 1.7e-16 90.1 150 47.3
FAN10G1532 Fragaria x ananassa HOM05D000368 ORTHO05D009348 1.7e-16 90.1 150 47.3
Glyma.10G235200 Glycine max HOM05D000368 ORTHO05D009348 2.2e-16 89.7 149 51.0
Duzib205G0377 Durio zibethinus HOM05D000368 ORTHO05D000289 2.9e-16 89.4 171 42.1
Psat0s3135g0040 Pisum sativum HOM05D000368 ORTHO05D009348 4.9e-16 88.6 102 50.0
Os04g0555800 Oryza sativa ssp. japonica HOM05D000368 ORTHO05D009348 8.4e-16 87.8 102 52.0
Actinidia03122 Actinidia chinensis HOM05D000368 ORTHO05D009348 2.3e-13 79.7 97 52.6
ATR0680G368 Amborella trichopoda HOM05D000368 ORTHO05D009348 3.0e-13 79.3 106 47.2
AUR62015971 Chenopodium quinoa HOM05D000368 ORTHO05D009348 3.9e-13 79.0 103 64.1
Pp3c16_20170 Physcomitrium patens HOM05D000368 ORTHO05D009348 1.5e-09 67.0 70 48.6
Mapoly0006s0064 Marchantia polymorpha HOM05D000368 ORTHO05D009348 4.4e-09 65.5 51 52.9
SEGI_15321 Sequoiadendron giganteum HOM05D000368 ORTHO05D009348 5.8e-09 65.1 103 40.8
AagrBONN_evm.TU.Sc2ySwM_117.528 Anthoceros agrestis HOM05D000368 ORTHO05D009348 1.7e-08 63.5 39 64.1
Nitab4.5_0001842g0090 Nicotiana tabacum HOM05D000368 ORTHO05D009348 6.4e-08 61.6 94 43.6
BraA10t43080Z Brassica rapa HOM05D000368 ORTHO05D009348 1.4e-07 60.5 39 64.1
A10p09970 Brassica napus HOM05D000368 ORTHO05D009348 4.6e-06 55.5 29 75.9


User provided reference genes

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