Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 9.2e-50 199.9 100 100.0
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 3.9e-32 141.4 80 88.8
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 3.4e-28 128.3 77 81.8
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 4.4e-28 127.9 81 79.0
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 4.3e-23 111.3 71 74.6
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 1.7e-19 99.4 76 69.7
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 1.2e-17 93.2 67 70.1
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 9.6e-15 83.6 49 77.6
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 9.6e-15 83.6 49 77.6
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 1.6e-14 82.8 44 88.6
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 2.8e-14 82.0 45 86.7
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.7e-14 81.6 55 72.7
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 1.1e-13 80.1 43 88.4
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 1.4e-13 79.7 45 84.4
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.4e-13 79.7 45 84.4
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 1.4e-13 79.7 45 84.4
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.8e-13 79.3 45 84.4
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 2.4e-13 79.0 44 84.1
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 2.4e-13 79.0 44 84.1
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 2.4e-13 79.0 45 82.2
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 3.1e-13 78.6 44 84.1
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 3.1e-13 78.6 45 82.2
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 5.3e-13 77.8 45 80.0
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 5.3e-13 77.8 43 86.0
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 6.9e-13 77.4 44 81.8
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 6.9e-13 77.4 42 85.7
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 1.5e-12 76.3 44 79.5
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 2.0e-12 75.9 43 83.7
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 2.0e-12 75.9 43 83.7
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 2.0e-12 75.9 43 83.7
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 2.0e-12 75.9 43 83.7
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 2.0e-12 75.9 43 83.7
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 2.6e-12 75.5 44 79.5
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.4e-12 75.1 41 85.4
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 4.5e-12 74.7 39 89.7
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 4.5e-12 74.7 45 77.8
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 5.8e-12 74.3 40 85.0
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 5.8e-12 74.3 42 83.3
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 5.8e-12 74.3 42 83.3
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 5.8e-12 74.3 41 85.4
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 5.8e-12 74.3 41 85.4
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 5.8e-12 74.3 42 83.3
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 7.6e-12 73.9 41 85.4
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 1.3e-11 73.2 42 81.0
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 2.2e-11 72.4 43 76.7
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 2.2e-11 72.4 40 85.0
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 2.2e-11 72.4 45 75.6
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 2.9e-11 72.0 43 79.1
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 2.9e-11 72.0 40 85.0
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 3.8e-11 71.6 43 76.7
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 4.9e-11 71.2 40 77.5
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 4.9e-11 71.2 43 79.1
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 6.5e-11 70.9 46 71.7
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 6.5e-11 70.9 46 71.7
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 6.5e-11 70.9 41 80.5
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 8.4e-11 70.5 40 82.5
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 1.9e-10 69.3 43 74.4
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 5.5e-10 67.8 38 81.6
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 9.3e-10 67.0 38 84.2
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 9.3e-10 67.0 38 84.2
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 9.3e-10 67.0 38 84.2
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 1.6e-09 66.2 39 76.9
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 4.6e-09 64.7 36 86.1
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 4.6e-09 64.7 43 62.8
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 4.6e-09 64.7 38 76.3
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.6e-09 64.7 32 93.8
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 6.0e-09 64.3 37 78.4
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 6.0e-09 64.3 37 78.4
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 6.0e-09 64.3 35 85.7
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 6.0e-09 64.3 35 85.7
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 1.0e-08 63.5 35 85.7
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 1.3e-08 63.2 37 75.7
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 1.3e-08 63.2 35 80.0
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 3.0e-08 62.0 34 85.3
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 5.1e-08 61.2 35 82.9
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 5.1e-08 61.2 35 82.9
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 8.7e-08 60.5 33 84.8
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 1.1e-07 60.1 35 80.0
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 2.5e-07 58.9 35 74.3
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 2.5e-07 58.9 35 80.0
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 7.4e-07 57.4 42 64.3
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 9.6e-07 57.0 33 81.8
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 9.6e-07 57.0 32 81.2
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 9.6e-07 57.0 32 84.4
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 9.6e-07 57.0 32 81.2
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 1.3e-06 56.6 33 78.8
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 2.1e-06 55.8 33 81.8
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 2.1e-06 55.8 32 81.2
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 2.1e-06 55.8 32 81.2
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 2.1e-06 55.8 32 81.2
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 2.1e-06 55.8 32 81.2
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 2.1e-06 55.8 32 78.1
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 2.8e-06 55.5 32 81.2
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 3.7e-06 55.1 33 72.7
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 3.7e-06 55.1 33 72.7
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 4.8e-06 54.7 33 72.7
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 4.8e-06 54.7 32 81.2
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 6.2e-06 54.3 33 72.7
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 6.2e-06 54.3 33 72.7
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 6.2e-06 54.3 33 72.7
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 6.2e-06 54.3 33 72.7
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 6.2e-06 54.3 33 72.7
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 6.2e-06 54.3 33 72.7
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 6.2e-06 54.3 33 78.8
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 6.2e-06 54.3 32 81.2
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 6.2e-06 54.3 33 75.8
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 8.2e-06 53.9 32 81.2
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 8.2e-06 53.9 32 78.1
Mapoly0014s0097 Marchantia polymorpha HOM05D000247 ORTHO05D003114 8.2e-06 53.9 77 36.4


User provided reference genes

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