Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042014 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 2.8e-94 348.6 177 100.0
CSS0026054 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 1.8e-88 329.3 171 97.7
Dinv12666 Davidia involucrata HOM05D003904 ORTHO05D004378 4.4e-55 218.4 168 71.4
Dinv19185 Davidia involucrata HOM05D003904 ORTHO05D004378 8.3e-54 214.2 152 75.7
Actinidia23715 Actinidia chinensis HOM05D003904 ORTHO05D004378 1.9e-53 213.0 153 79.1
CSS0000113 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 7.1e-53 211.1 153 75.8
Actinidia09474 Actinidia chinensis HOM05D003904 ORTHO05D004378 3.5e-52 208.8 151 77.5
Actinidia31468 Actinidia chinensis HOM05D003904 ORTHO05D004378 5.2e-48 194.9 162 67.9
Lj2C1127G11 Lonicera japonica HOM05D003904 ORTHO05D004378 9.3e-45 184.1 152 68.4
Manes.12G046500 Manihot esculenta HOM05D003904 ORTHO05D004378 2.7e-44 182.6 155 65.8
GSVIVG01038356001 Vitis vinifera HOM05D003904 ORTHO05D004378 3.5e-44 182.2 152 65.1
Rhsim01G0254500 Rhododendron simsii HOM05D003904 ORTHO05D004378 2.3e-43 179.5 136 71.3
TAR362G1128 Trochodendron aralioides HOM05D003904 ORTHO05D004378 3.9e-43 178.7 159 64.8
Ciclev10022271m.g Citrus clementina HOM05D003904 ORTHO05D004378 8.7e-43 177.6 155 64.5
Atru.chr6.1416 Acer truncatum HOM05D003904 ORTHO05D004378 7.3e-42 174.5 155 63.2
Nn3g20007 Nelumbo nucifera HOM05D003904 ORTHO05D004378 1.3e-41 173.7 151 63.6
Nn1g07928 Nelumbo nucifera HOM05D003904 ORTHO05D004378 1.6e-41 173.3 151 60.9
PGSC0003DMG400017482 Solanum tuberosum HOM05D003904 ORTHO05D004378 2.1e-41 172.9 154 64.9
Thecc.01G222100 Theobroma cacao HOM05D003904 ORTHO05D004378 2.8e-41 172.6 151 62.9
TAR636G3655 Trochodendron aralioides HOM05D003904 ORTHO05D004378 2.8e-41 172.6 157 63.1
Nitab4.5_0000345g0040 Nicotiana tabacum HOM05D003904 ORTHO05D004378 1.1e-40 170.6 158 63.9
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 1.1e-40 170.6 157 63.1
TWI18G1339 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 1.4e-40 170.2 155 63.2
Solyc09g059620.4 Solanum lycopersicum HOM05D003904 ORTHO05D004378 1.8e-40 169.9 154 64.9
Rhsim13G0046900 Rhododendron simsii HOM05D003904 ORTHO05D004378 2.4e-40 169.5 189 55.0
Duzib211G0008 Durio zibethinus HOM05D003904 ORTHO05D004378 4.0e-40 168.7 155 61.9
vmacro14743 Vaccinium macrocarpon HOM05D003904 ORTHO05D004378 6.9e-40 167.9 212 49.1
Manes.13G047800 Manihot esculenta HOM05D003904 ORTHO05D004378 9.0e-40 167.5 156 64.1
Sopen09g022790 Solanum pennellii HOM05D003904 ORTHO05D004378 1.2e-39 167.2 154 64.3
MSTRG.20964 Avicennia marina HOM05D003904 ORTHO05D004378 1.5e-39 166.8 153 63.4
Duzib133G0063 Durio zibethinus HOM05D003904 ORTHO05D004378 1.3e-38 163.7 151 60.3
Prupe.8G200300 Prunus persica HOM05D003904 ORTHO05D004378 3.8e-38 162.2 151 60.9
Oeu037383.1 Olea europaea HOM05D003904 ORTHO05D004378 4.9e-38 161.8 156 58.3
Cc01_g16830 Coffea canephora HOM05D003904 ORTHO05D004378 8.4e-38 161.0 142 62.7
MSTRG.18841 Avicennia marina HOM05D003904 ORTHO05D004378 1.9e-37 159.8 153 59.5
COL.COLO4_15645 Corchorus olitorius HOM05D003904 ORTHO05D004378 1.9e-37 159.8 151 61.6
Peaxi162Scf00238g00213 Petunia axillaris HOM05D003904 ORTHO05D004378 4.2e-37 158.7 151 60.9
Sabra02G0186200 Salix brachista HOM05D003904 ORTHO05D004378 4.2e-37 158.7 151 62.3
Potri.002G244700 Populus trichocarpa HOM05D003904 ORTHO05D004378 9.3e-37 157.5 150 62.0
CANSAT01G1918 Cannabis sativa HOM05D003904 ORTHO05D004378 2.1e-36 156.4 155 59.4
CANSAT01G1788 Cannabis sativa HOM05D003904 ORTHO05D004378 2.7e-36 156.0 155 59.4
Duzib138G1906 Durio zibethinus HOM05D003904 ORTHO05D004378 3.5e-36 155.6 152 58.6
Cfa002841 Carpinus fangiana HOM05D003904 ORTHO05D004378 6.0e-36 154.8 151 58.9
Nitab4.5_0000045g0390 Nicotiana tabacum HOM05D003904 ORTHO05D004378 7.9e-36 154.5 144 65.3
TWI75G0190 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 7.9e-36 154.5 155 60.6
Eucgr.K02144 Eucalyptus grandis HOM05D003904 ORTHO05D004378 2.3e-35 152.9 148 59.5
HanXRQChr01g0015241 Helianthus annuus HOM05D003904 ORTHO05D004378 3.9e-35 152.1 146 63.0
Hund05569 Selenicereus undatus HOM05D003904 ORTHO05D004378 3.9e-35 152.1 151 58.9
MD05G1172900 Malus domestica HOM05D003904 ORTHO05D004378 1.5e-34 150.2 151 59.6
Nitab4.5_0002641g0160 Nicotiana tabacum HOM05D003904 ORTHO05D004378 1.9e-34 149.8 146 61.0
CiPaw.04G104300 Carya illinoinensis HOM05D003904 ORTHO05D004378 3.3e-34 149.1 151 57.6
DCAR_004727 Daucus carota HOM05D003904 ORTHO05D004378 3.3e-34 149.1 150 54.0
Lsat_1_v5_gn_5_180640 Lactuca sativa HOM05D003904 ORTHO05D004378 4.3e-34 148.7 151 59.6
Gohir.A07G200400 Gossypium hirsutum HOM05D003904 ORTHO05D004378 1.3e-33 147.1 152 54.6
Migut.N00625 Erythranthe guttata HOM05D003904 ORTHO05D004378 2.1e-33 146.4 153 55.6
QL09p052136 Quercus lobata HOM05D003904 ORTHO05D004378 2.8e-33 146.0 146 60.3
QL09p053006 Quercus lobata HOM05D003904 ORTHO05D004378 2.8e-33 146.0 146 60.3
Sc17g0002200 Simmondsia chinensis HOM05D003904 ORTHO05D004378 2.8e-33 146.0 153 56.2
CsaV3_7G026020 Cucumis sativus L. HOM05D003904 ORTHO05D004378 3.6e-33 145.6 152 59.9
Potri.014G190800 Populus trichocarpa HOM05D003904 ORTHO05D004378 3.6e-33 145.6 150 56.0
SGA_v2.0_scaffold18G08327 Striga asiatica HOM05D003904 ORTHO05D004378 1.1e-32 144.1 157 58.6
arahy.Tifrunner.gnm1.ann1.P0KJIP Arachis hypogaea HOM05D003904 ORTHO05D004378 2.4e-32 142.9 157 56.7
MELO3C021054.2 Cucumis melo HOM05D003904 ORTHO05D004378 4.0e-32 142.1 152 59.2
Gohir.A07G200150 Gossypium hirsutum HOM05D003904 ORTHO05D004378 4.0e-32 142.1 150 54.7
Nitab4.5_0002616g0050 Nicotiana tabacum HOM05D003904 ORTHO05D004378 1.2e-31 140.6 146 58.2
Gorai.001G233000 Gossypium raimondii HOM05D003904 ORTHO05D004378 1.5e-31 140.2 152 53.3
AUR62001117 Chenopodium quinoa HOM05D003904 ORTHO05D004378 2.0e-31 139.8 151 54.3
Psat4g200440 Pisum sativum HOM05D003904 ORTHO05D004378 2.0e-31 139.8 154 54.5
AUR62016559 Chenopodium quinoa HOM05D003904 ORTHO05D004378 2.6e-31 139.4 151 54.3
FvH4_2g18710 Fragaria vesca HOM05D003904 ORTHO05D004378 3.4e-31 139.0 150 57.3
TWI36G1515 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 3.4e-31 139.0 155 56.8
Gohir.D07G206700 Gossypium hirsutum HOM05D003904 ORTHO05D004378 5.8e-31 138.3 152 52.6
RcHm_v2.0_Chr6g0284331 Rosa chinensis HOM05D003904 ORTHO05D004378 5.8e-31 138.3 150 56.7
SGA_v2.0_scaffold3G01636 Striga asiatica HOM05D003904 ORTHO05D004378 5.8e-31 138.3 155 52.3
Ah.08g214500 Amaranthus hybridus HOM05D003904 ORTHO05D004378 7.6e-31 137.9 154 54.5
PGR044G0663 Punica granatum HOM05D003904 ORTHO05D004378 9.9e-31 137.5 150 53.3
Phvul.010G020800 Phaseolus vulgaris HOM05D003904 ORTHO05D004378 1.3e-30 137.1 148 54.7
CiPaw.03G146900 Carya illinoinensis HOM05D003904 ORTHO05D004378 1.7e-30 136.7 152 55.3
EL10Ac7g17872 Beta vulgaris HOM05D003904 ORTHO05D004378 2.2e-30 136.3 152 54.6
Ca_23234_v3 Cicer arietinum L. HOM05D003904 ORTHO05D004378 2.2e-30 136.3 146 54.8
ClCG09G008850 Citrullus lanatus HOM05D003904 ORTHO05D004378 2.9e-30 136.0 142 60.6
Sabra14G0142300 Salix brachista HOM05D003904 ORTHO05D004378 2.9e-30 136.0 134 60.4
CSS0009711 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 8.4e-30 134.4 147 58.5
THA.LOC104822497 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 8.4e-30 134.4 155 51.6
SGA_v2.0_scaffold6G03227 Striga asiatica HOM05D003904 ORTHO05D004378 1.1e-29 134.0 155 51.6
Carub.0003s0669 Capsella rubella HOM05D003904 ORTHO05D004378 1.4e-29 133.7 151 55.0
Sed0012318 Sechium edule HOM05D003904 ORTHO05D004378 1.9e-29 133.3 151 58.3
THA.LOC104802662 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 1.9e-29 133.3 153 52.3
Glyma.08G349900 Glycine max HOM05D003904 ORTHO05D004378 2.4e-29 132.9 155 53.5
THA.LOC104818966 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 2.4e-29 132.9 153 52.3
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 2.4e-29 132.9 134 53.7
TPR.G17124 Trifolium pratense HOM05D003904 ORTHO05D004378 3.2e-29 132.5 146 54.1
Gohir.D07G206500 Gossypium hirsutum HOM05D003904 ORTHO05D004378 4.2e-29 132.1 157 51.0
Lalb_Chr12g0209941 Lupinus albus HOM05D003904 ORTHO05D004378 5.4e-29 131.7 149 52.3
Thhalv10021536m.g Eutrema salsugineum HOM05D003904 ORTHO05D004378 7.1e-29 131.3 151 53.6
Medtr8g012995 Medicago truncatula HOM05D003904 ORTHO05D004378 9.3e-29 131.0 149 52.3
ECA248G3101 Erigeron canadensis HOM05D003904 ORTHO05D004378 1.2e-28 130.6 147 55.8
Gorai.001G232800 Gossypium raimondii HOM05D003904 ORTHO05D004378 1.6e-28 130.2 157 50.3
Lalb_Chr07g0194271 Lupinus albus HOM05D003904 ORTHO05D004378 1.6e-28 130.2 149 51.7
Phvul.008G130000 Phaseolus vulgaris HOM05D003904 ORTHO05D004378 1.6e-28 130.2 155 51.6
FAN15G2255 Fragaria x ananassa HOM05D003904 ORTHO05D004378 2.7e-28 129.4 142 57.7
Glyma.03G064800 Glycine max HOM05D003904 ORTHO05D004378 2.7e-28 129.4 149 53.0
AL3G18420 Arabidopsis lyrata HOM05D003904 ORTHO05D004378 3.5e-28 129.0 151 51.7
BolC5t34670H Brassica oleracea HOM05D003904 ORTHO05D004378 7.9e-28 127.9 153 49.0
FAN27G1941 Fragaria x ananassa HOM05D003904 ORTHO05D004378 7.9e-28 127.9 142 57.0
Sc05g0002020 Simmondsia chinensis HOM05D003904 ORTHO05D004378 7.9e-28 127.9 162 53.1
AT3G07170 Arabidopsis thaliana HOM05D003904 ORTHO05D004378 1.0e-27 127.5 151 51.7
FAN24G3335 Fragaria x ananassa HOM05D003904 ORTHO05D004378 1.0e-27 127.5 142 57.0
Lj3g0009581 Lotus japonicus HOM05D003904 ORTHO05D004378 1.8e-27 126.7 147 53.7
SalBow6G0123 Salvia bowleyana HOM05D003904 ORTHO05D004378 1.8e-27 126.7 224 39.3
unitig_736.g22341 Utricularia gibba HOM05D003904 ORTHO05D004378 1.8e-27 126.7 158 46.8
vmacro02774 Vaccinium macrocarpon HOM05D003904 ORTHO05D004378 1.8e-27 126.7 178 47.8
PSO357G0115 Papaver somniferum HOM05D003904 ORTHO05D004378 5.1e-27 125.2 154 51.9
MD10G1161300 Malus domestica HOM05D003904 ORTHO05D004378 6.7e-27 124.8 151 52.3
PSO170G6902 Papaver somniferum HOM05D003904 ORTHO05D004378 6.7e-27 124.8 154 51.9
C05p60200 Brassica napus HOM05D003904 ORTHO05D004378 1.9e-26 123.2 142 52.1
Cpa.g.sc8.132 Carica papaya HOM05D003904 ORTHO05D004378 1.9e-26 123.2 114 61.4
Sp3g06110 Schrenkiella parvula HOM05D003904 ORTHO05D004378 7.4e-26 121.3 151 50.3
Oeu031826.2 Olea europaea HOM05D003904 ORTHO05D004378 9.6e-26 120.9 101 64.4
BcaC05g29846 Brassica carinata HOM05D003904 ORTHO05D004378 2.8e-25 119.4 133 51.9
CDE05G3121 Ceratophyllum demersum HOM05D003904 ORTHO05D004378 2.8e-25 119.4 156 48.1
Aa31LG5G17730 Aethionema arabicum HOM05D003904 ORTHO05D004378 4.8e-25 118.6 154 48.7
CDE05G2788 Ceratophyllum demersum HOM05D003904 ORTHO05D004378 4.8e-25 118.6 156 46.8
ATR0609G102 Amborella trichopoda HOM05D003904 ORTHO05D004378 1.4e-24 117.1 160 46.9
Aqoxy5G00012 Aquilegia oxysepala HOM05D003904 ORTHO05D004378 1.8e-24 116.7 170 44.1
Glyma.16G100600 Glycine max HOM05D003904 ORTHO05D004378 3.1e-24 115.9 155 50.3
BraA05t22830Z Brassica rapa HOM05D003904 ORTHO05D004378 1.2e-23 114.0 143 50.3
BcaC05g29749 Brassica carinata HOM05D003904 ORTHO05D004378 1.5e-23 113.6 131 51.9
HPP92_021424 Vanilla planifolia HOM05D003904 ORTHO05D004378 1.5e-23 113.6 157 49.7
BraA03t12693Z Brassica rapa HOM05D003904 ORTHO05D004378 1.0e-22 110.9 157 45.9
CARHR081810 Cardamine hirsuta HOM05D003904 ORTHO05D004378 6.5e-22 108.2 153 48.4
Thhalv10004989m.g Eutrema salsugineum HOM05D003904 ORTHO05D004378 6.5e-22 108.2 151 45.7
Sp2g19090 Schrenkiella parvula HOM05D003904 ORTHO05D004378 1.9e-21 106.7 153 45.8
A03p35130 Brassica napus HOM05D003904 ORTHO05D004378 2.5e-21 106.3 147 46.3
C03p42720 Brassica napus HOM05D003904 ORTHO05D004378 5.5e-21 105.1 147 46.3
BolC3t16542H Brassica oleracea HOM05D003904 ORTHO05D004378 1.6e-20 103.6 147 45.6
Haze_24836 Corylus avellana HOM05D003904 ORTHO05D004378 3.5e-20 102.4 89 59.6
Hund18422 Selenicereus undatus HOM05D003904 ORTHO05D004378 7.9e-20 101.3 152 47.4
BraA06t26812Z Brassica rapa HOM05D003904 ORTHO05D004378 1.3e-19 100.5 164 41.5
Haze_24839 Corylus avellana HOM05D003904 ORTHO05D004378 1.3e-19 100.5 89 58.4
BolC7t44455H Brassica oleracea HOM05D003904 ORTHO05D004378 3.0e-19 99.4 112 52.7
VMungo0331G0837 Vigna mungo HOM05D003904 ORTHO05D004378 6.7e-19 98.2 109 50.5
BcaC06g30767 Brassica carinata HOM05D002747 ORTHO05D003069 1.1e-18 97.4 120 51.7
BcaC06g30768 Brassica carinata HOM05D003904 ORTHO05D004378 1.9e-18 96.7 153 44.4
Os04g0378200 Oryza sativa ssp. japonica HOM05D003904 ORTHO05D004378 2.5e-18 96.3 156 41.7
C07p39350 Brassica napus HOM05D003904 ORTHO05D004378 4.3e-18 95.5 152 43.4
A06p38980 Brassica napus HOM05D003904 ORTHO05D004378 1.3e-17 94.0 128 48.4
arahy.Tifrunner.gnm1.ann1.YG552F Arachis hypogaea HOM05D003904 ORTHO05D004378 1.8e-16 90.1 206 37.9
Zm00001eb085860 Zea mays HOM05D003904 ORTHO05D004378 1.8e-16 90.1 155 42.6
Zm00001eb420700 Zea mays HOM05D003904 ORTHO05D004378 5.3e-16 88.6 155 42.6
Carub.0008s0842 Capsella rubella HOM05D003904 ORTHO05D004378 5.8e-15 85.1 154 39.0
AT5G48680 Arabidopsis thaliana HOM05D003904 ORTHO05D004378 1.1e-13 80.9 151 43.0
AL8G21740 Arabidopsis lyrata HOM05D003904 ORTHO05D004378 3.2e-13 79.3 143 42.7
AUR62035029 Chenopodium quinoa HOM05D003904 ORTHO05D004378 4.6e-12 75.5 91 51.6
Sed0014618 Sechium edule HOM05D003904 ORTHO05D004378 5.1e-11 72.0 95 53.7
Oeu037381.1 Olea europaea HOM05D003904 ORTHO05D004378 6.7e-11 71.6 59 61.0
CARHR183220 Cardamine hirsuta HOM05D003904 ORTHO05D004378 5.7e-10 68.6 149 38.9
Migut.D02496 Erythranthe guttata HOM05D003904 ORTHO05D004378 1.3e-09 67.4 95 48.4
SMO147G0262 Selaginella moellendorffii HOM05D003904 ORTHO05D004378 2.6e-07 59.7 134 33.6
Aa31sc370G10 Aethionema arabicum HOM05D003904 ORTHO05D004378 3.4e-07 59.3 65 50.8
AagrBONN_evm.TU.Sc2ySwM_340.277 Anthoceros agrestis HOM05D003904 ORTHO05D004378 8.5e-06 54.7 170 29.4
AagrBONN_evm.TU.Sc2ySwM_344.3201 Anthoceros agrestis HOM05D003904 ORTHO05D004378 8.5e-06 54.7 170 29.4


User provided reference genes

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