Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.1e-307 1059.3 573 100.0
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 3.8e-305 1050.8 573 99.5
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 4.0e-190 668.7 571 65.8
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.5e-181 640.2 571 62.5
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 9.9e-181 637.5 571 62.3
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 4.2e-179 632.1 555 63.8
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 6.9e-166 588.2 565 59.1
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 7.6e-165 584.7 582 57.7
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 8.4e-164 581.3 571 59.9
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 1.3e-156 557.4 568 58.8
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 2.5e-155 553.1 566 56.9
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 4.2e-155 552.4 564 54.6
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 4.6e-154 548.9 567 56.4
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 7.9e-154 548.1 550 57.5
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.3e-153 547.4 566 55.8
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 6.7e-153 545.0 565 57.3
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 1.1e-152 544.3 573 55.8
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 9.7e-152 541.2 567 54.7
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 1.8e-150 537.0 579 55.6
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 2.0e-149 533.5 566 56.0
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 3.4e-149 532.7 550 57.3
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.7e-148 530.4 571 57.4
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 6.5e-148 528.5 567 54.3
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 2.5e-147 526.6 578 53.3
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 2.5e-147 526.6 549 55.7
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 7.2e-147 525.0 577 53.2
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 9.3e-147 524.6 565 53.8
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.6e-146 523.9 575 52.7
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.4e-145 520.8 565 53.3
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 1.8e-145 520.4 568 54.2
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 2.3e-145 520.0 575 52.2
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 6.7e-145 518.5 568 54.0
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 8.8e-145 518.1 570 56.8
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 4.3e-144 515.8 566 53.2
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 6.3e-143 511.9 573 53.4
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 6.9e-142 508.4 566 53.7
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 3.4e-141 506.1 564 53.7
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.3e-140 504.2 610 49.0
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 2.2e-140 503.4 565 52.4
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 2.9e-140 503.1 578 50.5
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 1.9e-139 500.4 575 51.7
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 2.5e-139 500.0 536 52.1
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 3.2e-139 499.6 585 50.4
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.3e-137 493.4 549 54.3
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 2.3e-137 493.4 566 51.1
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 8.8e-137 491.5 564 52.0
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 9.7e-136 488.0 564 52.1
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 2.8e-135 486.5 568 51.8
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 3.7e-135 486.1 572 51.6
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 1.4e-134 484.2 613 46.5
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.4e-134 484.2 557 52.4
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.2e-133 481.1 566 50.2
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.6e-133 479.9 545 52.3
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 1.3e-132 477.6 600 49.8
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 5.0e-132 475.7 581 51.8
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 6.5e-132 475.3 537 52.9
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.4e-131 474.2 537 52.7
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 3.2e-131 473.0 564 50.9
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 5.5e-131 472.2 566 51.4
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 1.6e-130 470.7 486 55.6
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 3.6e-130 469.5 605 48.9
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 4.7e-130 469.2 598 48.5
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 1.8e-129 467.2 532 48.9
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 1.8e-129 467.2 533 48.2
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 3.9e-129 466.1 539 49.4
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 6.7e-129 465.3 580 51.2
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 2.6e-128 463.4 586 48.3
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 7.4e-128 461.8 543 51.6
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.7e-127 460.7 486 54.5
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 2.8e-127 459.9 600 48.5
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 2.8e-127 459.9 594 49.3
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 3.7e-127 459.5 536 49.4
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 4.8e-127 459.1 524 49.8
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 6.3e-127 458.8 595 48.7
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 1.1e-126 458.0 525 49.9
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 1.4e-126 457.6 533 48.0
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 5.3e-126 455.7 571 48.7
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 5.3e-126 455.7 596 49.5
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 1.2e-125 454.5 530 49.4
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 5.9e-125 452.2 530 49.2
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 1.3e-124 451.1 523 48.8
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 1.3e-124 451.1 523 48.8
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 2.2e-124 450.3 533 50.3
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 8.5e-124 448.4 573 49.0
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 1.5e-123 447.6 565 50.4
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 7.2e-123 445.3 458 53.9
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 7.2e-123 445.3 571 49.9
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 1.8e-121 440.7 524 48.1
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 7.5e-120 435.3 587 47.7
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 1.3e-119 434.5 566 47.3
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 2.9e-116 423.3 577 45.1
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.1e-115 421.4 536 46.6
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 1.5e-115 421.0 579 46.5
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 2.1e-114 417.2 595 45.4
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 2.3e-113 413.7 575 46.3
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 5.2e-113 412.5 579 47.3
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 1.3e-111 407.9 526 50.2
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 5.4e-110 402.5 542 44.5
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 1.0e-108 398.3 543 44.8
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 2.5e-107 393.7 569 43.1
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 2.1e-106 390.6 479 49.1
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.2e-104 384.8 337 60.5
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 9.2e-102 375.2 612 41.0
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 2.3e-100 370.5 310 61.6
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 9.5e-99 365.2 561 43.3
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 4.0e-97 359.8 554 42.4
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 2.2e-95 354.0 562 43.8
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 9.2e-94 348.6 536 42.7
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 3.5e-93 346.7 734 36.4
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.5e-91 340.5 620 36.9
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 9.5e-91 338.6 493 41.4
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 3.6e-90 336.7 571 39.1
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 2.0e-88 330.9 545 40.4
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 5.8e-88 329.3 575 38.4
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 3.3e-75 287.0 454 41.0
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.4e-73 281.6 527 36.1
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 1.6e-69 268.1 532 34.6
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 2.5e-67 260.8 616 32.6
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 9.0e-65 252.3 272 49.3
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 2.1e-61 241.1 210 58.1
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 3.0e-60 237.3 645 30.7
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 1.6e-58 231.5 501 34.1
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 2.4e-57 227.6 662 30.4
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 1.7e-55 221.5 417 39.3
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 2.4e-54 217.6 530 33.6
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.1e-50 204.5 290 39.0
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 5.5e-46 189.9 172 57.6
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 5.5e-38 163.3 185 53.0
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 1.3e-36 158.7 151 54.3
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 7.4e-35 152.9 555 28.5
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 2.6e-32 144.4 489 26.0
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 3.4e-32 144.1 300 33.0
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 6.5e-31 139.8 281 32.7
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 1.4e-30 138.7 160 52.5
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 1.3e-26 125.6 142 50.0
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 4.2e-22 110.5 293 29.4
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 7.2e-22 109.8 88 61.4
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.2e-22 109.8 88 61.4
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 1.3e-18 99.0 126 47.6
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 1.8e-17 95.1 177 35.0
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 7.0e-09 66.6 85 37.6


User provided reference genes

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