Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 2396.7 1124 100.0
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1971.1 1079 83.7
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1889.4 1079 80.3
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1861.3 1072 79.5
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1853.6 1058 80.0
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1837.8 1079 77.8
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1828.5 1099 75.7
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1828.1 1075 76.9
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1816.6 1074 77.0
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1810.8 1079 76.9
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1810.4 1074 76.5
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1803.9 1078 76.3
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1803.5 1078 76.5
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1800.8 1074 75.8
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1800.0 1074 75.4
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1796.6 1074 75.2
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1796.2 1074 75.4
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1790.4 1074 75.2
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1790.0 1085 75.7
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1765.0 1099 73.0
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1764.2 1075 74.0
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1763.8 1074 74.9
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1761.9 1073 74.2
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1760.7 1101 73.2
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1758.4 1078 73.8
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1756.9 1081 75.0
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1747.6 1074 73.6
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1742.6 1075 73.7
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1742.2 1090 73.6
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1721.4 1112 70.3
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1721.1 1074 73.9
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1717.2 1073 72.4
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1716.4 1075 71.5
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1716.4 1075 71.9
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1715.3 1075 71.7
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1713.4 1158 69.4
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1712.2 1073 72.5
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1712.2 1078 71.6
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1710.7 1079 72.3
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1710.7 1074 72.1
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1710.7 1074 72.0
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1709.9 993 78.0
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1709.9 1076 71.7
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1709.1 1078 72.6
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1706.8 1073 72.3
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1704.1 1078 72.4
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1703.7 1075 71.7
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1702.6 1074 71.5
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1701.8 1075 71.3
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1699.1 1074 71.8
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1697.2 1078 71.0
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1692.2 1062 72.0
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1691.8 1073 72.0
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1691.4 1077 72.0
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1691.4 1079 72.0
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1691.4 1074 71.3
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1689.5 1074 71.3
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1687.2 1062 71.7
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1687.2 1074 70.6
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1686.4 1057 72.9
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1686.4 1079 70.4
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1685.6 1074 71.3
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1684.5 1064 71.6
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1683.3 1079 71.9
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1682.9 1099 69.4
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1682.5 1099 69.5
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1681.4 1074 70.8
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1681.4 1083 70.7
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1681.4 1074 70.5
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1680.6 1078 72.6
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1680.6 1080 70.6
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1679.5 1059 71.6
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1675.2 1059 71.9
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1647.5 1077 69.5
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1642.1 1077 69.6
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1640.9 1079 69.1
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1634.0 1077 71.0
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1620.9 1094 68.2
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1612.4 1087 67.3
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1603.6 1086 67.7
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1588.5 1104 66.7
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1588.2 1088 67.5
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1567.4 1002 73.1
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1550.0 1129 66.1
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1534.6 1090 64.2
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1496.5 919 74.2
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1484.2 1045 64.4
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1465.7 857 77.9
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1373.2 1039 62.4
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1357.0 835 75.0
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1340.1 835 74.3
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1316.6 748 79.9
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1292.7 767 78.4
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1283.9 1092 54.6
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1265.8 1075 55.5
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1246.9 1082 54.5
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1240.3 746 76.0
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1136.7 1086 50.8
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1088.2 625 78.4
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 9.9e-310 1067.0 695 71.5
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 2.3e-298 1029.2 1109 47.0
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 1.4e-250 870.5 498 80.3
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.2e-249 867.5 654 63.3
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.3e-224 784.3 573 63.0
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 3.9e-213 746.1 495 70.1
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 5.1e-213 745.7 495 69.9
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 1.8e-165 587.8 1428 30.3
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 7.2e-159 565.8 319 81.2
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 1.5e-148 531.6 619 46.2
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 1.5e-124 451.8 240 82.9
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 1.3e-120 438.7 244 79.5
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 6.1e-118 429.9 272 74.3
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 3.4e-108 397.5 590 39.7
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 1.3e-99 369.0 793 32.2
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 5.8e-92 343.6 245 64.5
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 6.6e-88 330.1 199 74.4
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 2.1e-86 325.1 174 84.5
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 2.8e-78 298.1 208 68.3
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.5e-71 275.0 158 73.4
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 3.8e-67 261.2 160 73.8
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 2.7e-65 255.0 199 60.3
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 7.4e-63 246.9 208 53.8
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 9.6e-63 246.5 164 69.5
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 3.7e-54 218.0 104 98.1
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 5.7e-39 167.5 136 55.1
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 6.3e-38 164.1 198 44.4
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 3.8e-35 154.8 173 47.4
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 2.7e-33 148.7 82 76.8
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 3.3e-31 141.7 144 49.3
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 5.7e-31 141.0 134 51.5
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 1.3e-30 139.8 85 74.1
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.7e-30 139.4 135 51.1
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 9.1e-29 133.7 81 72.8
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.6e-28 132.1 75 74.7
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 1.0e-27 130.2 132 52.3
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.1e-26 126.7 53 100.0
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 1.2e-25 123.2 96 59.4
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 2.1e-25 122.5 140 47.9
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.2e-23 116.7 81 60.5
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 4.1e-21 108.2 66 71.2
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 7.7e-20 104.0 100 51.0
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 2.9e-19 102.1 117 47.9
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 2.3e-16 92.4 126 42.1
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 2.0e-15 89.4 100 46.0
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 4.4e-15 88.2 100 46.0
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 2.8e-14 85.5 85 49.4
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 1.1e-13 83.6 44 79.5
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 7.0e-13 80.9 44 79.5
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 1.6e-12 79.7 136 39.0
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 2.0e-12 79.3 47 72.3
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 5.9e-12 77.8 44 75.0
CSS0027518 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D111919 2.0e-07 62.8 27 100.0
Lsat_1_v5_gn_2_15720 Lactuca sativa HOM05D001670 ORTHO05D016190 2.6e-07 62.4 44 63.6
Lsat_1_v5_gn_1_71901 Lactuca sativa HOM05D017333 ORTHO05D017063 5.7e-07 61.2 36 69.4
Lsat_1_v5_gn_1_88920 Lactuca sativa HOM05D000207 ORTHO05D001482 7.5e-07 60.8 51 51.0
Lsat_1_v5_gn_5_41360 Lactuca sativa HOM05D000207 ORTHO05D016190 9.8e-07 60.5 38 65.8
Lsat_1_v5_gn_5_181001 Lactuca sativa HOM05D005112 ORTHO05D006681 1.3e-06 60.1 90 36.7
Lsat_1_v5_gn_8_34420 Lactuca sativa HOM05D000274 ORTHO05D001466 1.7e-06 59.7 37 67.6
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 2.2e-06 59.3 38 63.2
Lsat_1_v5_gn_4_164861 Lactuca sativa HOM05D001159 ORTHO05D001712 2.2e-06 59.3 36 63.9
Lsat_1_v5_gn_5_54380 Lactuca sativa HOM05D000274 ORTHO05D001466 2.2e-06 59.3 37 67.6
Lsat_1_v5_gn_1_91120 Lactuca sativa HOM05D002740 ORTHO05D003126 2.9e-06 58.9 37 64.9
Lsat_1_v5_gn_8_57801 Lactuca sativa HOM05D002290 ORTHO05D017063 3.7e-06 58.5 35 68.6


User provided reference genes

Program Settings