Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041758 Camellia sinensis var. sinensis HOM05D002493 ORTHO05D020243 8.8e-93 344.4 291 100.0
CSS0001541 Camellia sinensis var. sinensis HOM05D002493 ORTHO05D020243 2.5e-87 326.2 299 95.7
Manes.08G061400 Manihot esculenta HOM05D002493 ORTHO05D003175 2.6e-20 103.6 295 28.8
Hma1.2p1_0254F.1_g103210 Hydrangea macrophylla HOM05D002493 ORTHO05D003175 9.9e-20 101.7 287 29.3
QL07p012378 Quercus lobata HOM05D002493 ORTHO05D003175 1.3e-19 101.3 287 31.0
Nn7g36909 Nelumbo nucifera HOM05D002493 ORTHO05D003175 1.7e-19 100.9 287 29.6
Dinv21482 Davidia involucrata HOM05D002493 ORTHO05D003175 2.2e-19 100.5 289 29.8
Actinidia05482 Actinidia chinensis HOM05D002493 ORTHO05D003175 3.8e-19 99.8 287 28.6
CiPaw.10G042500 Carya illinoinensis HOM05D002493 ORTHO05D003175 4.9e-19 99.4 287 29.6
CiPaw.09G049700 Carya illinoinensis HOM05D002493 ORTHO05D003175 1.1e-18 98.2 287 29.3
Cfa019980 Carpinus fangiana HOM05D002493 ORTHO05D003175 2.4e-18 97.1 293 29.0
ClCG10G016470 Citrullus lanatus HOM05D002493 ORTHO05D003175 2.4e-18 97.1 288 30.2
CANSAT64G2707 Cannabis sativa HOM05D002493 ORTHO05D003175 7.1e-18 95.5 289 29.8
MELO3C009729.2 Cucumis melo HOM05D002493 ORTHO05D003175 7.1e-18 95.5 288 29.9
Dinv08254 Davidia involucrata HOM05D002493 ORTHO05D003175 9.3e-18 95.1 287 29.6
Haze_20255 Corylus avellana HOM05D002493 ORTHO05D003175 3.5e-17 93.2 287 28.9
CsaV3_3G039870 Cucumis sativus L. HOM05D002493 ORTHO05D003175 3.5e-17 93.2 290 29.7
Cpa.g.sc92.76 Carica papaya HOM05D002493 ORTHO05D003175 4.6e-17 92.8 295 28.8
Ciclev10011717m.g Citrus clementina HOM05D002493 ORTHO05D003175 4.6e-17 92.8 289 28.7
Lalb_Chr14g0365651 Lupinus albus HOM05D002493 ORTHO05D003175 6.0e-17 92.4 289 29.4
Sed0023770 Sechium edule HOM05D002493 ORTHO05D003175 7.9e-17 92.0 288 28.5
Prupe.7G028700 Prunus persica HOM05D002493 ORTHO05D003175 1.0e-16 91.7 291 28.5
Manes.09G002800 Manihot esculenta HOM05D002493 ORTHO05D003175 1.3e-16 91.3 293 28.0
Sed0019660 Sechium edule HOM05D002493 ORTHO05D003175 1.8e-16 90.9 287 28.2
Phvul.007G239100 Phaseolus vulgaris HOM05D002493 ORTHO05D003175 2.3e-16 90.5 290 26.9
Glyma.02G157800 Glycine max HOM05D002493 ORTHO05D003175 3.9e-16 89.7 290 27.9
Eucgr.A02206 Eucalyptus grandis HOM05D002493 ORTHO05D003175 5.1e-16 89.4 289 27.7
Lj1g0014460 Lotus japonicus HOM05D002493 ORTHO05D003175 1.1e-15 88.2 289 27.3
Nn2g14656 Nelumbo nucifera HOM05D002493 ORTHO05D003175 3.3e-15 86.7 287 27.9
Gohir.A11G306400 Gossypium hirsutum HOM05D002493 ORTHO05D003175 4.3e-15 86.3 289 28.4
Lalb_Chr02g0156621 Lupinus albus HOM05D002493 ORTHO05D003175 4.3e-15 86.3 289 27.3
Potri.016G033300 Populus trichocarpa HOM05D002493 ORTHO05D003175 4.3e-15 86.3 294 33.3
VMungo0720G0912 Vigna mungo HOM05D002493 ORTHO05D003175 4.3e-15 86.3 289 28.0
PSO384G4835 Papaver somniferum HOM05D002493 ORTHO05D003175 9.6e-15 85.1 286 26.9
TAR636G0768 Trochodendron aralioides HOM05D002493 ORTHO05D003175 9.6e-15 85.1 287 28.9
Gohir.D11G321900 Gossypium hirsutum HOM05D002493 ORTHO05D003175 1.3e-14 84.7 289 27.7
TAR623G0194 Trochodendron aralioides HOM05D002493 ORTHO05D003175 1.3e-14 84.7 289 27.0
Atru.chr1.1386 Acer truncatum HOM05D002493 ORTHO05D003175 1.6e-14 84.3 289 26.3
Actinidia38179 Actinidia chinensis HOM05D002493 ORTHO05D003175 2.1e-14 84.0 287 27.2
SalBow6G2849 Salvia bowleyana HOM05D002493 ORTHO05D003175 2.1e-14 84.0 296 28.0
TWI77G0717 Tripterygium wilfordii HOM05D002493 ORTHO05D003175 2.8e-14 83.6 293 27.6
Oeu027954.1 Olea europaea HOM05D002493 ORTHO05D003175 3.7e-14 83.2 287 27.9
PSO339G5287 Papaver somniferum HOM05D002493 ORTHO05D003175 3.7e-14 83.2 286 26.6
TAR633G1508 Trochodendron aralioides HOM05D002493 ORTHO05D003175 3.7e-14 83.2 287 26.8
Lalb_Chr22g0357761 Lupinus albus HOM05D002493 ORTHO05D003175 4.8e-14 82.8 292 28.1
Oeu024613.1 Olea europaea HOM05D002493 ORTHO05D003175 4.8e-14 82.8 293 26.6
Ca_08373_v3 Cicer arietinum L. HOM05D002493 ORTHO05D003175 6.2e-14 82.4 289 27.7
THA.LOC104823166 Tarenaya hassleriana HOM05D002493 ORTHO05D003175 6.2e-14 82.4 292 33.2
MSTRG.6331 Avicennia marina HOM05D002493 ORTHO05D003175 8.1e-14 82.0 287 26.8
Duzib106G0075 Durio zibethinus HOM05D002493 ORTHO05D003175 8.1e-14 82.0 290 26.6
Gorai.007G352000 Gossypium raimondii HOM05D002493 ORTHO05D003175 1.1e-13 81.6 283 27.6
Oeu005221.1 Olea europaea HOM05D002493 ORTHO05D003175 1.1e-13 81.6 290 26.9
COL.COLO4_08833 Corchorus olitorius HOM05D002493 ORTHO05D003175 1.4e-13 81.3 284 26.1
Medtr7g089140 Medicago truncatula HOM05D002493 ORTHO05D003175 1.8e-13 80.9 289 25.6
Aqoxy1G00414 Aquilegia oxysepala HOM05D002493 ORTHO05D003175 2.4e-13 80.5 289 26.6
Duzib128G0587 Durio zibethinus HOM05D002493 ORTHO05D003175 2.4e-13 80.5 295 26.4
Potri.006G035500 Populus trichocarpa HOM05D002493 ORTHO05D003175 2.4e-13 80.5 294 33.3
Thecc.05G121400 Theobroma cacao HOM05D002493 ORTHO05D003175 3.1e-13 80.1 284 27.5
TWI53G1609 Tripterygium wilfordii HOM05D002493 ORTHO05D003175 4.0e-13 79.7 293 27.0
TWI74G0428 Tripterygium wilfordii HOM05D002493 ORTHO05D003175 5.3e-13 79.3 294 27.9
vmacro08996 Vaccinium macrocarpon HOM05D002493 ORTHO05D003175 5.3e-13 79.3 289 27.7
VMungo1383G2045 Vigna mungo HOM05D002493 ORTHO05D003175 5.3e-13 79.3 289 26.6
Solyc10g080930.2 Solanum lycopersicum HOM05D002493 ORTHO05D003175 6.9e-13 79.0 287 26.1
Migut.J01632 Erythranthe guttata HOM05D002493 ORTHO05D003175 9.0e-13 78.6 295 26.4
Phvul.001G120200 Phaseolus vulgaris HOM05D002493 ORTHO05D003175 9.0e-13 78.6 291 26.5
PGR042G0425 Punica granatum HOM05D002493 ORTHO05D003175 9.0e-13 78.6 292 26.7
Lalb_Chr24g0400441 Lupinus albus HOM05D002493 ORTHO05D003175 1.2e-12 78.2 296 26.7
CiPaw.09G049600 Carya illinoinensis HOM05D002493 ORTHO05D003175 1.5e-12 77.8 290 25.5
Nitab4.5_0000812g0010 Nicotiana tabacum HOM05D002493 ORTHO05D003175 1.5e-12 77.8 289 27.3
Psat3g080480 Pisum sativum HOM05D002493 ORTHO05D003175 1.5e-12 77.8 289 24.2
PGSC0003DMG400028192 Solanum tuberosum HOM05D002493 ORTHO05D003175 2.0e-12 77.4 287 26.1
EL10Ac3g07266 Beta vulgaris HOM05D002493 ORTHO05D003175 2.6e-12 77.0 299 26.1
Aqoxy2G00506 Aquilegia oxysepala HOM05D002493 ORTHO05D003175 4.5e-12 76.3 282 26.2
AL6G14970 Arabidopsis lyrata HOM05D002493 ORTHO05D003175 4.5e-12 76.3 292 25.7
Nitab4.5_0002869g0070 Nicotiana tabacum HOM05D002493 ORTHO05D003175 4.5e-12 76.3 288 26.4
Sc13g0000980 Simmondsia chinensis HOM05D002493 ORTHO05D003175 4.5e-12 76.3 288 28.5
Sopen10g031440 Solanum pennellii HOM05D002493 ORTHO05D003175 4.5e-12 76.3 287 25.8
Rhsim04G0114000 Rhododendron simsii HOM05D002493 ORTHO05D003175 5.8e-12 75.9 288 28.1
MSTRG.19785 Avicennia marina HOM05D002493 ORTHO05D003175 7.6e-12 75.5 290 26.6
Hund19081 Selenicereus undatus HOM05D002493 ORTHO05D003175 7.6e-12 75.5 292 26.4
MBI19_g07500_MAGBIO Magnolia biondii HOM05D002493 ORTHO05D003175 1.0e-11 75.1 289 25.3
Sc19g0008100 Simmondsia chinensis HOM05D002493 ORTHO05D003175 1.0e-11 75.1 287 25.4
THA.LOC104826877 Tarenaya hassleriana HOM05D002493 ORTHO05D003175 1.0e-11 75.1 287 27.9
arahy.Tifrunner.gnm1.ann1.4137UB Arachis hypogaea HOM05D002493 ORTHO05D003175 1.7e-11 74.3 283 25.1
Glyma.03G124700 Glycine max HOM05D002493 ORTHO05D003175 2.2e-11 73.9 291 26.5
HPP92_025127 Vanilla planifolia HOM05D000001 ORTHO05D000003 2.2e-11 73.9 286 25.9
arahy.Tifrunner.gnm1.ann1.ZA3CQ0 Arachis hypogaea HOM05D002493 ORTHO05D003175 3.8e-11 73.2 283 25.1
DCAR_013651 Daucus carota HOM05D002493 ORTHO05D003175 3.8e-11 73.2 291 27.5
RcHm_v2.0_Chr2g0150411 Rosa chinensis HOM05D002493 ORTHO05D003175 3.8e-11 73.2 286 32.5
Peaxi162Scf01487g00006 Petunia axillaris HOM05D002493 ORTHO05D003175 4.9e-11 72.8 287 26.1
Carub.0006s0407 Capsella rubella HOM05D002493 ORTHO05D003175 6.5e-11 72.4 292 25.7
Nitab4.5_0000062g0160 Nicotiana tabacum HOM05D002493 ORTHO05D003175 8.4e-11 72.0 83 43.4
TPR.G16085 Trifolium pratense HOM05D002493 ORTHO05D003175 8.4e-11 72.0 289 23.5
CSS0002579 Camellia sinensis var. sinensis HOM05D002493 ORTHO05D003175 1.1e-10 71.6 89 50.6
MBI13_g36916_MAGBIO Magnolia biondii HOM05D002493 ORTHO05D003175 1.4e-10 71.2 287 26.5
Nitab4.5_0007477g0010 Nicotiana tabacum HOM05D002493 ORTHO05D003175 1.4e-10 71.2 83 42.2
Peaxi162Scf00003g05036 Petunia axillaris HOM05D002493 ORTHO05D003175 1.4e-10 71.2 287 26.5
Sabra06G0023800 Salix brachista HOM05D002493 ORTHO05D003175 1.4e-10 71.2 294 32.0
SGA_v2.0_scaffold69G23165 Striga asiatica HOM05D002493 ORTHO05D003175 1.4e-10 71.2 284 26.1
Glyma.19G127800 Glycine max HOM05D002493 ORTHO05D003175 2.5e-10 70.5 291 25.1
FAN02G2197 Fragaria x ananassa HOM05D002493 ORTHO05D003175 3.2e-10 70.1 67 44.8
MD14G1088300 Malus domestica HOM05D002493 ORTHO05D003175 5.5e-10 69.3 52 55.8
arahy.Tifrunner.gnm1.ann1.SF5CY1 Arachis hypogaea HOM05D002493 ORTHO05D003175 7.1e-10 68.9 289 26.6
FvH4_6g37520 Fragaria vesca HOM05D002493 ORTHO05D003175 7.1e-10 68.9 287 25.8
FAN14G2978 Fragaria x ananassa HOM05D002493 ORTHO05D003175 7.1e-10 68.9 287 25.8
SGA_v2.0_scaffold66G22278 Striga asiatica HOM05D002493 ORTHO05D003175 7.1e-10 68.9 88 38.6
Peaxi162Scf00003g05135 Petunia axillaris HOM05D002493 ORTHO05D003175 9.3e-10 68.6 98 40.8
SEGI_11259 Sequoiadendron giganteum HOM05D002493 ORTHO05D003175 9.3e-10 68.6 286 24.8
SGA_v2.0_scaffold106G30532 Striga asiatica HOM05D002493 ORTHO05D003175 9.3e-10 68.6 67 46.3
FAN09G4564 Fragaria x ananassa HOM05D002493 ORTHO05D003175 1.6e-09 67.8 67 44.8
Sabra16G0036400 Salix brachista HOM05D002493 ORTHO05D003175 2.1e-09 67.4 88 40.9
arahy.Tifrunner.gnm1.ann1.TK2Q97 Arachis hypogaea HOM05D002493 ORTHO05D003175 2.7e-09 67.0 289 26.0
Ca_12358_v3 Cicer arietinum L. HOM05D002493 ORTHO05D003175 2.7e-09 67.0 83 41.0
Lj2C403T6 Lonicera japonica HOM05D002493 ORTHO05D003175 2.7e-09 67.0 289 24.9
Cc00_g10950 Coffea canephora HOM05D002493 ORTHO05D003175 3.5e-09 66.6 295 25.4
HPP92_006789 Vanilla planifolia HOM05D002493 ORTHO05D003175 3.5e-09 66.6 284 25.4
AUR62030285 Chenopodium quinoa HOM05D002493 ORTHO05D003175 4.6e-09 66.2 284 25.0
Peaxi162Scf00003g05132 Petunia axillaris HOM05D002493 ORTHO05D003175 4.6e-09 66.2 102 39.2
Aa31LG11G5990 Aethionema arabicum HOM05D002493 ORTHO05D003175 6.0e-09 65.9 92 48.9
Ca_22467_v3 Cicer arietinum L. HOM05D000349 ORTHO05D003175 6.0e-09 65.9 83 39.8
Nn1g07932 Nelumbo nucifera HOM05D002493 ORTHO05D003175 6.0e-09 65.9 53 49.1
CDE08G0106 Ceratophyllum demersum HOM05D002493 ORTHO05D003175 1.0e-08 65.1 84 52.4
HanXRQChr01g0007661 Helianthus annuus HOM05D002493 ORTHO05D003175 1.0e-08 65.1 65 41.5
Atru.chr3.2727 Acer truncatum HOM05D002493 ORTHO05D003175 1.3e-08 64.7 74 40.5
Thhalv10013510m.g Eutrema salsugineum HOM05D002493 ORTHO05D003175 1.8e-08 64.3 295 24.7
Ah.13g077170 Amaranthus hybridus HOM05D002493 ORTHO05D003175 2.3e-08 63.9 295 24.4
A10p31030 Brassica napus HOM05D002493 ORTHO05D003175 2.3e-08 63.9 287 25.8
BraA10t45148Z Brassica rapa HOM05D002493 ORTHO05D003175 2.3e-08 63.9 287 25.8
Ca_17097_v3 Cicer arietinum L. HOM05D002493 ORTHO05D003175 2.3e-08 63.9 83 37.3
Haze_20253 Corylus avellana HOM05D002493 ORTHO05D003175 2.3e-08 63.9 51 51.0
HanXRQChr13g0406701 Helianthus annuus HOM05D002493 ORTHO05D003175 3.0e-08 63.5 285 23.9
unitig_21.g20685 Utricularia gibba HOM05D002493 ORTHO05D003175 3.0e-08 63.5 289 26.0
CDE08G0887 Ceratophyllum demersum HOM05D002493 ORTHO05D003175 6.7e-08 62.4 79 54.4
QL07p012326 Quercus lobata HOM05D002493 ORTHO05D003175 6.7e-08 62.4 88 47.7
GSVIVG01025776001 Vitis vinifera HOM05D002493 ORTHO05D003175 6.7e-08 62.4 69 56.5
Ah.04g150770 Amaranthus hybridus HOM05D002493 ORTHO05D003175 8.7e-08 62.0 72 40.3
C09p71560 Brassica napus HOM05D002493 ORTHO05D003175 1.1e-07 61.6 87 44.8
BolC9t59917H Brassica oleracea HOM05D002493 ORTHO05D003175 1.1e-07 61.6 87 44.8
ATR0307G132 Amborella trichopoda HOM05D002493 ORTHO05D003175 1.5e-07 61.2 289 24.9
AT5G05140 Arabidopsis thaliana HOM05D002493 ORTHO05D003175 1.5e-07 61.2 290 24.8
Sp6g37700 Schrenkiella parvula HOM05D002493 ORTHO05D003175 1.5e-07 61.2 293 25.6
CARHR208120 Cardamine hirsuta HOM05D002493 ORTHO05D003175 1.9e-07 60.8 83 51.8
Migut.K00147 Erythranthe guttata HOM05D002493 ORTHO05D003175 1.9e-07 60.8 286 24.5
SEGI_20583 Sequoiadendron giganteum HOM05D002493 ORTHO05D003175 1.9e-07 60.8 46 52.2
BcaB01g05724 Brassica carinata HOM05D002493 ORTHO05D003175 2.5e-07 60.5 86 43.0
AUR62018377 Chenopodium quinoa HOM05D002493 ORTHO05D003175 2.5e-07 60.5 55 65.5
TAR375G0992 Trochodendron aralioides HOM05D002493 ORTHO05D003175 2.5e-07 60.5 63 38.1
CAN.G128.85 Capsicum annuum HOM05D002493 ORTHO05D003175 4.3e-07 59.7 84 47.6
ECA248G1298 Erigeron canadensis HOM05D002493 ORTHO05D003175 4.3e-07 59.7 65 38.5
A03p02180 Brassica napus HOM05D002493 ORTHO05D003175 5.7e-07 59.3 80 37.5
Carub.0003s1006 Capsella rubella HOM05D002493 ORTHO05D003175 5.7e-07 59.3 67 40.3
SEGI_02726 Sequoiadendron giganteum HOM05D024882 ORTHO05D020243 5.7e-07 59.3 45 53.3
BcaC06g32223 Brassica carinata HOM05D002493 ORTHO05D003175 7.4e-07 58.9 67 40.3
CARHR085400 Cardamine hirsuta HOM05D002493 ORTHO05D003175 7.4e-07 58.9 68 44.1
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 7.4e-07 58.9 46 47.8
BcaB05g21730 Brassica carinata HOM05D002493 ORTHO05D003175 9.6e-07 58.5 85 47.1
Sp3g09150 Schrenkiella parvula HOM05D002493 ORTHO05D003175 1.3e-06 58.2 64 43.8
CAN.G960.68 Capsicum annuum HOM05D002493 ORTHO05D003175 2.1e-06 57.4 69 34.8
Zm00001eb394260 Zea mays HOM05D002493 ORTHO05D003175 2.1e-06 57.4 46 52.2
BraA03t09582Z Brassica rapa HOM05D002493 ORTHO05D003175 2.8e-06 57.0 49 49.0
DCAR_009127 Daucus carota HOM05D002493 ORTHO05D003175 2.8e-06 57.0 103 33.0
Lsat_1_v5_gn_7_61900 Lactuca sativa HOM05D002493 ORTHO05D003175 2.8e-06 57.0 287 27.5
BcaC03g13147 Brassica carinata HOM05D002493 ORTHO05D003175 6.2e-06 55.8 89 30.3
C02p02180 Brassica napus HOM05D002493 ORTHO05D003175 6.2e-06 55.8 89 30.3
AL3G22340 Arabidopsis lyrata HOM05D002493 ORTHO05D003175 8.2e-06 55.5 104 33.7
BolC2t06187H Brassica oleracea HOM05D002493 ORTHO05D003175 8.2e-06 55.5 67 37.3


User provided reference genes

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